Summary information and primary citation
- PDB-id
-
4gjp;
DSSR-derived features in text and
JSON formats; DNAproDB
- Class
- transcription-DNA
- Method
- X-ray (1.94 Å)
- Summary
- Crystal structure of the tal effector dhax3 bound to
dsDNA containing repetitive methyl-cpg
- Reference
- Yan N, Deng D, Yan CY, Yin P, Pan XJ, Shi YG: "Crystal
structure of a protein complex."
- Abstract
-
List of 4 5mC-amino acid contacts
- The contacts include paired nucleotides (mostly a G in
Watson-Crick G-C pairing) and amino-acids within a 4.5-Å
distance cutoff to base atoms of 5mC.
- The structure is oriented in the base reference frame
of 5mC, allowing for easy comparison and direct
superimposition between entries.
- The black sphere (•) denotes the
5-methyl carbon atom in 5mC.
No. 1 I.5CM6: stacking-with-A.ASN505
is-WC-paired is-in-duplex [+]:TcG/CGA
No. 2 I.5CM8: stacking-with-A.ASN573
is-WC-paired is-in-duplex [+]:GcG/CGC
No. 3 G.5CM6: stacking-with-B.ASN505
is-WC-paired is-in-duplex [+]:TcG/CGA
No. 4 G.5CM8: stacking-with-B.ASN573
is-WC-paired is-in-duplex [+]:GcG/CGC
