Summary information and primary citation
- PDB-id
-
4gjr;
DSSR-derived features in text and
JSON formats; DNAproDB
- Class
- transcription-DNA
- Method
- X-ray (1.85 Å)
- Summary
- Crystal structure of the tal effector dhax3 bound to
methylated dsDNA
- Reference
- Yan N, Deng D, Yan CY, Yin P, Pan XJ, Shi YG: "Crystal
structure of a protein complex."
- Abstract
-
List of 6 5mC-amino acid contacts
- The contacts include paired nucleotides (mostly a G in
Watson-Crick G-C pairing) and amino-acids within a 4.5-Å
distance cutoff to base atoms of 5mC.
- The structure is oriented in the base reference frame
of 5mC, allowing for easy comparison and direct
superimposition between entries.
- The black sphere (•) denotes the
5-methyl carbon atom in 5mC.
No. 1 I.5CM8: hydrophobic-with-A.GLY437
hydrophobic-with-A.GLY438 is-WC-paired is-in-duplex
[+]:TcT/AGA
No. 2 I.5CM11: stacking-with-A.ASP573
is-WC-paired is-in-duplex [+]:AcC/GGT
No. 3 I.5CM15: hydrophobic-with-A.GLY675
hydrophobic-with-A.GLY676 is-WC-paired is-in-duplex
[+]:CcC/GGG
No. 4 G.5CM8: hydrophobic-with-B.GLY437
hydrophobic-with-B.GLY471 hydrophobic-with-B.GLY472
is-WC-paired is-in-duplex [+]:TcT/AGA
No. 5 G.5CM11: stacking-with-B.ASP573
is-WC-paired is-in-duplex [+]:AcC/GGT
No. 6 G.5CM15: hydrophobic-with-B.GLY675
hydrophobic-with-B.GLY676 is-WC-paired is-in-duplex
[+]:CcC/GGG
