Summary information and primary citation
- PDB-id
-
6d1t;
DSSR-derived features in text and
JSON formats; DNAproDB
- Class
- DNA binding protein-DNA
- Method
- X-ray (2.25 Å)
- Summary
- Complex of mbd1-mbd and methylated DNA
- Reference
- Liu K, Xu C, Tempel W, Arrowsmith CH, Bountra C,
Edwards AM, Min J, Structural Genomics Consortium: "Complex
of MBD1-MBD and methylated DNA."
- Abstract
-
List of 2 5mC-amino acid contacts
- The contacts include paired nucleotides (mostly a G in
Watson-Crick G-C pairing) and amino-acids within a 4.5-Å
distance cutoff to base atoms of 5mC.
- The structure is oriented in the base reference frame
of 5mC, allowing for easy comparison and direct
superimposition between entries.
- The black sphere (•) denotes the
5-methyl carbon atom in 5mC.
No. 1 B.5CM6: stacking-with-A.ARG22
is-WC-paired is-in-duplex [+]:AcG/cGT
No. 2 C.5CM6: stacking-with-A.ARG44
is-WC-paired is-in-duplex [-]:cGT/AcG
