Summary information and primary citation
- PDB-id
-
7mwk;
DSSR-derived features in text and
JSON formats; DNAproDB
- Class
- DNA binding protein-DNA
- Method
- X-ray (2.453 Å)
- Summary
- Crystal structure of mbd2 with DNA
- Reference
- Liu K, Dong A, Edwards AM, Arrowsmith CH, Min J,
Structural Genomics Consortium (SGC): "Crystal structure of
MBD2 with DNA."
- Abstract
-
List of 4 5mC-amino acid contacts
- The contacts include paired nucleotides (mostly a G in
Watson-Crick G-C pairing) and amino-acids within a 4.5-Å
distance cutoff to base atoms of 5mC.
- The structure is oriented in the base reference frame
of 5mC, allowing for easy comparison and direct
superimposition between entries.
- The black sphere (•) denotes the
5-methyl carbon atom in 5mC.
No. 1 C.5CM6: stacking-with-A.ARG166
is-WC-paired is-in-duplex [+]:AcG/cGT
No. 2 D.5CM6: other-contacts
is-WC-paired is-in-duplex [-]:cGT/AcG
No. 3 E.5CM6: other-contacts
is-WC-paired is-in-duplex [+]:AcG/cGT
No. 4 F.5CM6: stacking-with-B.ARG166
is-WC-paired is-in-duplex [-]:cGT/AcG
