1a1t
|
viral protein-RNA |
NMR |
De Guzman RN, Wu ZR, Stalling CC, Pappalardo L, Borer
PN, Summers MF |
(1998) "Structure
of the HIV-1 nucleocapsid protein bound to the SL3
psi-RNA recognition element." Science,
279, 384-388. doi: 10.1126/science.279.5349.384.
|
Structure of the hiv-1 nucleocapsid protein bound to
the sl3 psi-RNA recognition element, NMR, 25 structures
. SNAP output
|
1a34
|
virus-RNA |
X-ray (1.81 Å) |
Larson SB, Day J, Greenwood A, McPherson A |
(1998) "Refined
structure of satellite tobacco mosaic virus at 1.8 A
resolution." J.Mol.Biol.,
277, 37-59. doi: 10.1006/jmbi.1997.1570.
|
Satellite tobacco mosaic virus-RNA complex . SNAP output
|
1a4t
|
transcription-RNA |
NMR |
Cai Z, Gorin A, Frederick R, Ye X, Hu W, Majumdar A,
Kettani A, Patel DJ |
(1998) "Solution
structure of P22 transcriptional antitermination N
peptide-boxB RNA complex."
Nat.Struct.Biol., 5, 203-212.
doi: 10.1038/nsb0398-203.
|
Solution structure of phage p22 n peptide-box b RNA
complex, NMR, 20 structures . SNAP output
|
1a9n
|
RNA binding protein-RNA |
X-ray (2.38 Å) |
Price SR, Evans PR, Nagai K |
(1998) "Crystal
structure of the spliceosomal U2B"-U2A' protein complex
bound to a fragment of U2 small nuclear RNA."
Nature, 394, 645-650. doi:
10.1038/29234.
|
Crystal structure of the spliceosomal u2b''-u2a'
protein complex bound to a fragment of u2 small nuclear
RNA . SNAP output
|
1aq3
|
virus-RNA |
X-ray (2.8 Å) |
van den Worm SH, Stonehouse NJ, Valegard K, Murray
JB, Walton C, Fridborg K, Stockley PG, Liljas L |
(1998) "Crystal
structures of MS2 coat protein mutants in complex with
wild-type RNA operator fragments." Nucleic
Acids Res., 26, 1345-1351. doi:
10.1093/nar/26.5.1345.
|
Bacteriophage ms2 capsid protein-RNA complex . SNAP output
|
1aq4
|
virus-RNA |
X-ray (3.0 Å) |
van den Worm SH, Stonehouse NJ, Valegard K, Murray
JB, Walton C, Fridborg K, Stockley PG, Liljas L |
(1998) "Crystal
structures of MS2 coat protein mutants in complex with
wild-type RNA operator fragments." Nucleic
Acids Res., 26, 1345-1351. doi:
10.1093/nar/26.5.1345.
|
Structure of a ms2 coat protein mutant in complex with
an RNA operator . SNAP
output
|
1asy
|
complex (aminoacyl-trna synthase-trna) |
X-ray (2.9 Å) |
Ruff M, Krishnaswamy S, Boeglin M, Poterszman A,
Mitschler A, Podjarny A, Rees B, Thierry JC, Moras D |
(1991) "Class II
aminoacyl transfer RNA synthetases: crystal structure
of yeast aspartyl-tRNA synthetase complexed with
tRNA(Asp)." Science, 252,
1682-1689.
|
Class ii aminoacyl transfer RNA synthetases: crystal
structure of yeast aspartyl-trna synthetase complexed
with trna asp . SNAP
output
|
1asz
|
complex (aminoacyl-trna synthase-trna) |
X-ray (3.0 Å) |
Cavarelli J, Eriani G, Rees B, Ruff M, Boeglin M,
Mitschler A, Martin F, Gangloff J, Thierry JC, Moras
D |
(1994) "The
active site of yeast aspartyl-tRNA synthetase:
structural and functional aspects of the aminoacylation
reaction." EMBO J., 13,
327-337.
|
The active site of yeast aspartyl-trna synthetase:
structural and functional aspects of the aminoacylation
reaction . SNAP
output
|
1aud
|
RNA binding protein-RNA |
NMR |
Allain FH, Howe PW, Neuhaus D, Varani G |
(1997) "Structural
basis of the RNA-binding specificity of human U1A
protein." EMBO J., 16,
5764-5774. doi: 10.1093/emboj/16.18.5764.
|
U1a-utrrna, NMR, 31 structures . SNAP output
|
1av6
|
transferase-RNA |
X-ray (2.8 Å) |
Hodel AE, Gershon PD, Quiocho FA |
(1998) "Structural
basis for sequence-nonspecific recognition of 5'-capped
mRNA by a cap-modifying enzyme." Mol.Cell,
1, 443-447. doi: 10.1016/S1097-2765(00)80044-1.
|
Vaccinia methyltransferase vp39 complexed with m7g
capped RNA hexamer and s-adenosylhomocysteine .
SNAP output
|
1b23
|
gene regulation-RNA |
X-ray (2.6 Å) |
Nissen P, Thirup S, Kjeldgaard M, Nyborg J |
(1999) "The
crystal structure of Cys-tRNACys-EF-Tu-GDPNP reveals
general and specific features in the ternary complex
and in tRNA." Structure Fold.Des.,
7, 143-156. doi: 10.1016/S0969-2126(99)80021-5.
|
E. coli cysteinyl-trna and t. aquaticus elongation
factor ef-tu:gtp ternary complex . SNAP output
|
1b2m
|
hydrolase-RNA |
X-ray (2.0 Å) |
Arni RK, Watanabe L, Ward RJ, Kreitman RJ, Kumar K,
Walz Jr FG |
(1999) "Three-dimensional
structure of ribonuclease T1 complexed with an
isosteric phosphonate substrate analogue of GpU:
alternate substrate binding modes and catalysis."
Biochemistry, 38, 2452-2461.
doi: 10.1021/bi982612q.
|
Three-dimensional structure of ribonulcease t1
complexed with an isosteric phosphonate analogue of
gpu: alternate substrate binding modes and catalysis. .
SNAP output
|
1b7f
|
RNA-binding protein-RNA |
X-ray (2.6 Å) |
Handa N, Nureki O, Kurimoto K, Kim I, Sakamoto H,
Shimura Y, Muto Y, Yokoyama S |
(1999) "Structural
basis for recognition of the tra mRNA precursor by the
Sex-lethal protein." Nature,
398, 579-585. doi: 10.1038/19242.
|
Sxl-lethal protein-RNA complex . SNAP output
|
1biv
|
viral protein-RNA |
NMR |
Ye X, Kumar RA, Patel DJ |
(1995) "Molecular
recognition in the bovine immunodeficiency virus Tat
peptide-TAR RNA complex." Chem.Biol.,
2, 827-840. doi: 10.1016/1074-5521(95)90089-6.
|
Bovine immunodeficiency virus tat-tar complex, NMR, 5
structures . SNAP
output
|
1bmv
|
virus-RNA |
X-ray (3.0 Å) |
Chen ZG, Stauffacher C, Li Y, Schmidt T, Bomu W,
Kamer G, Shanks M, Lomonossoff G, Johnson JE |
(1989) "Protein-RNA
interactions in an icosahedral virus at 3.0 A
resolution." Science,
245, 154-159.
|
Protein-RNA interactions in an icosahedral virus at 3.0
angstroms resolution . SNAP output
|
1c04
|
ribosome |
X-ray (5.0 Å) |
Ban N, Nissen P, Hansen J, Capel M, Moore PB, Steitz
TA |
(1999) "Placement
of protein and RNA structures into a 5 A-resolution map
of the 50S ribosomal subunit." Nature,
400, 841-847. doi: 10.1038/23641.
|
Identification of known protein and RNA structures in a
5 a map of the large ribosomal subunit from haloarcula
marismortui . SNAP
output
|
1c0a
|
ligase-RNA |
X-ray (2.4 Å) |
Eiler S, Dock-Bregeon A, Moulinier L, Thierry JC,
Moras D |
(1999) "Synthesis
of aspartyl-tRNA(Asp) in Escherichia coli--a snapshot
of the second step." EMBO J.,
18, 6532-6541. doi: 10.1093/emboj/18.22.6532.
|
Crystal structure of the e. coli aspartyl-trna
synthetase : trnaasp : aspartyl-adenylate complex .
SNAP output
|
1c9s
|
RNA binding protein-RNA |
X-ray (1.9 Å) |
Antson AA, Dodson EJ, Dodson G, Greaves RB, Chen X,
Gollnick P |
(1999) "Structure
of the trp RNA-binding attenuation protein, TRAP, bound
to RNA." Nature, 401,
235-242. doi: 10.1038/45730.
|
Crystal structure of a complex of trp RNA-binding
attenuation protein with a 53-base single stranded RNA
containing eleven gag triplets separated by au
dinucleotides . SNAP
output
|
1cgm
|
virus |
fiber diffraction |
Wang H, Stubbs G |
(1994) "Structure
determination of cucumber green mottle mosaic virus by
X-ray fiber diffraction. Significance for the evolution
of tobamoviruses." J.Mol.Biol.,
239, 371-384. doi: 10.1006/jmbi.1994.1379.
|
Structure determination of cucumber green mottle mosaic
virus by x-ray fiber diffraction. significance for the
evolution of tobamoviruses . SNAP output
|
1cvj
|
gene regulation-RNA |
X-ray (2.6 Å) |
Deo RC, Bonanno JB, Sonenberg N, Burley SK |
(1999) "Recognition
of polyadenylate RNA by the poly(A)-binding
protein." Cell(Cambridge,Mass.),
98, 835-845. doi: 10.1016/S0092-8674(00)81517-2.
|
X-ray crystal structure of the poly(a)-binding protein
in complex with polyadenylate RNA . SNAP output
|
1cwp
|
virus-RNA |
X-ray (3.2 Å) |
Speir JA, Munshi S, Wang G, Baker TS, Johnson JE |
(1995) "Structures
of the native and swollen forms of cowpea chlorotic
mottle virus determined by X-ray crystallography and
cryo-electron microscopy." Structure,
3, 63-77. doi: 10.1016/S0969-2126(01)00135-6.
|
Structures of the native and swollen forms of cowpea
chlorotic mottle virus determined by x-ray
crystallography and cryo-electron microscopy . SNAP output
|
1d6k
|
ribosome |
NMR |
Stoldt M, Wohnert J, Ohlenschlager O, Gorlach M,
Brown LR |
(1999) "The NMR
structure of the 5S rRNA E-domain-protein L25 complex
shows preformed and induced recognition." EMBO
J., 18, 6508-6521. doi: 10.1093/emboj/18.22.6508.
|
NMR solution structure of the 5s rrna e-loop-l25
complex . SNAP
output
|
1d9d
|
transferase-DNA, RNA |
X-ray (2.18 Å) |
Teplova M, Wallace ST, Tereshko V, Minasov G, Symons
AM, Cook PD, Manoharan M, Egli M |
(1999) "Structural
origins of the exonuclease resistance of a zwitterionic
RNA." Proc.Natl.Acad.Sci.USA,
96, 14240-14245. doi: 10.1073/pnas.96.25.14240.
|
Crystall structure of the complex of DNA polymerase i
klenow fragment with short DNA fragment carrying
2'-0-aminopropyl-RNA modifications 5'-d(tcg)-ap(auc)-3'
. SNAP output
|
1d9f
|
transferase-DNA, RNA |
X-ray (3.0 Å) |
Teplova M, Wallace ST, Tereshko V, Minasov G, Symons
AM, Cook PD, Manoharan M, Egli M |
(1999) "Structural
origins of the exonuclease resistance of a zwitterionic
RNA." Proc.Natl.Acad.Sci.USA,
96, 14240-14245. doi: 10.1073/pnas.96.25.14240.
|
Crystal structure of the complex of DNA polymerase i
klenow fragment with DNA tetramer carrying
2'-o-(3-aminopropyl)-RNA modification
5'-d(tt)-ap(u)-d(t)-3' . SNAP output
|
1ddl
|
virus-RNA |
X-ray (2.7 Å) |
Larson SB, Day J, Canady MA, Greenwood A, McPherson
A |
(2000) "Refined
structure of desmodium yellow mottle tymovirus at 2.7 A
resolution." J.Mol.Biol.,
301, 625-642. doi: 10.1006/jmbi.2000.3983.
|
Desmodium yellow mottle tymovirus . SNAP output
|
1dfu
|
ribosome |
X-ray (1.8 Å) |
Lu M, Steitz TA |
(2000) "Structure
of Escherichia coli ribosomal protein L25 complexed
with a 5S rRNA fragment at 1.8-A resolution."
Proc.Natl.Acad.Sci.USA, 97,
2023-2028. doi: 10.1073/pnas.97.5.2023.
|
Crystal structure of e.coli ribosomal protein l25
complexed with a 5s rrna fragment at 1.8 Å resolution .
SNAP output
|
1di2
|
RNA binding protein-RNA |
X-ray (1.9 Å) |
Ryter JM, Schultz SC |
(1998) "Molecular
basis of double-stranded RNA-protein interactions:
structure of a dsRNA-binding domain complexed with
dsRNA." EMBO J., 17,
7505-7513. doi: 10.1093/emboj/17.24.7505.
|
Crystal structure of a dsrna-binding domain complexed
with dsrna: molecular basis of double-stranded
RNA-protein interactions . SNAP output
|
1dk1
|
ribosome |
X-ray (2.8 Å) |
Nikulin A, Serganov A, Ennifar E, Tishchenko S,
Nevskaya N, Shepard W, Portier C, Garber M, Ehresmann B,
Ehresmann C, Nikonov S, Dumas P |
(2000) "Crystal
structure of the S15-rRNA complex."
Nat.Struct.Biol., 7, 273-277.
doi: 10.1038/74028.
|
Detailed view of a key element of the ribosome
assembly: crystal structure of the s15-rrna complex .
SNAP output
|
1drz
|
RNA binding protein-RNA |
X-ray (2.3 Å) |
Ferre-D'Amare AR, Zhou K, Doudna JA |
(1998) "Crystal
structure of a hepatitis delta virus ribozyme."
Nature, 395, 567-574. doi:
10.1038/26912.
|
U1a spliceosomal protein-hepatitis delta virus genomic
ribozyme complex . SNAP
output
|
1dul
|
signaling protein-RNA |
X-ray (1.8 Å) |
Batey RT, Rambo RP, Lucast L, Rha B, Doudna JA |
(2000) "Crystal
structure of the ribonucleoprotein core of the signal
recognition particle." Science,
287, 1232-1239. doi: 10.1126/science.287.5456.1232.
|
Structure of the ribonucleoprotein core of the e. coli
signal recognition particle . SNAP output
|
1dz5
|
ribonucleoprotein-RNA |
NMR |
Varani L, Gunderson SI, Mattaj IW, Kay LE, Neuhaus D,
Varani G |
(2000) "The NMR
Structure of the 38kDa U1A Protein-Pie RNA Complex
Reveals the Basis of Cooperativity in Regulation of
Polyadenylation by Human U1A Protein."
Nat.Struct.Biol., 7, 329.
doi: 10.1038/74101.
|
The NMR structure of the 38kda u1a protein-pie RNA
complex reveals the basis of cooperativity in
regulation of polyadenylation by human u1a protein .
SNAP output
|
1e7k
|
RNA binding protein |
X-ray (2.9 Å) |
Vidovic I, Nottrott S, Hartmuth K, Luhrmann R, Ficner
R |
(2000) "Crystal
Structure of the Spliceosomal 15.5Kd Protein Bound to a
U4 Snrna Fragment." Mol.Cell,
6, 1331. doi: 10.1016/S1097-2765(00)00131-3.
|
Crystal structure of the spliceosomal 15.5kd protein
bound to a u4 snrna fragment . SNAP output
|
1e8o
|
alu ribonucleoprotein particle |
X-ray (3.2 Å) |
Weichenrieder O, Wild K, Strub K, Cusack S |
(2000) "Structure
and Assembly of the Alu Domain of the Mammalian Signal
Recognition Particle." Nature,
408, 167. doi: 10.1038/35041507.
|
Core of the alu domain of the mammalian srp . SNAP output
|
1ec6
|
RNA binding protein-RNA |
X-ray (2.4 Å) |
Lewis HA, Musunuru K, Jensen KB, Edo C, Chen H,
Darnell RB, Burley SK |
(2000) "Sequence-specific
RNA binding by a Nova KH domain: implications for
paraneoplastic disease and the fragile X syndrome."
Cell(Cambridge,Mass.), 100,
323-332. doi: 10.1016/S0092-8674(00)80668-6.
|
Crystal structure of nova-2 kh3 k-homology RNA-binding
domain bound to 20-mer RNA hairpin . SNAP output
|
1efw
|
ligase-RNA |
X-ray (3.0 Å) |
Briand C, Poterszman A, Eiler S, Webster G, Thierry
J, Moras D |
(2000) "An
intermediate step in the recognition of tRNA(Asp) by
aspartyl-tRNA synthetase." J.Mol.Biol.,
299, 1051-1060. doi: 10.1006/jmbi.2000.3819.
|
Crystal structure of aspartyl-trna synthetase from
thermus thermophilus complexed to trnaasp from
escherichia coli . SNAP
output
|
1eiy
|
ligase-RNA |
X-ray (3.3 Å) |
Goldgur Y, Mosyak L, Reshetnikova L, Ankilova V,
Lavrik O, Khodyreva S, Safro M |
(1997) "The
crystal structure of phenylalanyl-tRNA synthetase from
thermus thermophilus complexed with cognate
tRNAPhe." Structure, 5,
59-68. doi: 10.1016/S0969-2126(97)00166-4.
|
The crystal structure of phenylalanyl-trna synthetase
from thermus thermophilus complexed with cognate
trnaphe . SNAP
output
|
1ekz
|
cell cycle-RNA |
NMR |
Ramos A, Grunert S, Adams J, Micklem DR, Proctor MR,
Freund S, Bycroft M, St Johnston D, Varani G |
(2000) "RNA
recognition by a Staufen double-stranded RNA-binding
domain." EMBO J., 19,
997-1009. doi: 10.1093/emboj/19.5.997.
|
NMR structure of the complex between the third dsrbd
from drosophila staufen and a RNA hairpin . SNAP output
|
1eqq
|
replication-RNA |
X-ray (3.2 Å) |
Matsumoto T, Morimoto Y, Shibata N, Kinebuchi T,
Shimamoto N, Tsukihara T, Yasuoka N |
(2000) "Roles of
functional loops and the C-terminal segment of a
single-stranded DNA binding protein elucidated by X-Ray
structure analysis." J.Biochem.(Tokyo),
127, 329-335.
|
Single stranded DNA binding protein and ssDNA complex .
SNAP output
|
1etf
|
viral protein-RNA |
NMR |
Battiste JL, Mao H, Rao NS, Tan R, Muhandiram DR, Kay
LE, Frankel AD, Williamson JR |
(1996) "Alpha
helix-RNA major groove recognition in an HIV-1 rev
peptide-RRE RNA complex." Science,
273, 1547-1551.
|
Rev response element (rre) RNA complexed with rev
peptide, NMR, minimized average structure . SNAP output
|
1etg
|
viral protein-RNA |
NMR |
Battiste JL, Mao H, Rao NS, Tan R, Muhandiram DR, Kay
LE, Frankel AD, Williamson JR |
(1996) "Alpha
helix-RNA major groove recognition in an HIV-1 rev
peptide-RRE RNA complex." Science,
273, 1547-1551.
|
Rev response element (rre) RNA complexed with rev
peptide, NMR, 19 structures . SNAP output
|
1euq
|
ligase-RNA |
X-ray (3.1 Å) |
Sherlin LD, Bullock TL, Newberry KJ, Lipman RS, Hou
YM, Beijer B, Sproat BS, Perona JJ |
(2000) "Influence
of transfer RNA tertiary structure on aminoacylation
efficiency by glutaminyl and cysteinyl-tRNA
synthetases." J.Mol.Biol.,
299, 431-446. doi: 10.1006/jmbi.2000.3749.
|
Crystal structure of glutaminyl-trna synthetase
complexed with a trna-gln mutant and an active-site
inhibitor . SNAP
output
|
1euy
|
ligase-RNA |
X-ray (2.6 Å) |
Sherlin LD, Bullock TL, Newberry KJ, Lipman RS, Hou
YM, Beijer B, Sproat BS, Perona JJ |
(2000) "Influence
of transfer RNA tertiary structure on aminoacylation
efficiency by glutaminyl and cysteinyl-tRNA
synthetases." J.Mol.Biol.,
299, 431-446. doi: 10.1006/jmbi.2000.3749.
|
Glutaminyl-trna synthetase complexed with a trna mutant
and an active site inhibitor . SNAP output
|
1exd
|
ligase-RNA |
X-ray (2.7 Å) |
Bullock TL, Sherlin LD, Perona JJ |
(2000) "Tertiary
core rearrangements in a tight binding transfer RNA
aptamer." Nat.Struct.Biol.,
7, 497-504. doi: 10.1038/75910.
|
Crystal structure of a tight-binding glutamine trna
bound to glutamine aminoacyl trna synthetase . SNAP output
|
1exy
|
RNA binding protein-RNA |
NMR |
Jiang F, Gorin A, Hu W, Majumdar A, Baskerville S, Xu
W, Ellington A, Patel DJ |
(1999) "Anchoring
an extended HTLV-1 Rex peptide within an RNA major
groove containing junctional base triples."
Structure Fold.Des., 7,
1461-1472. doi: 10.1016/S0969-2126(00)88337-9.
|
Solution structure of htlv-1 peptide bound to its RNA
aptamer target . SNAP
output
|
1f6u
|
structural protein-RNA |
NMR |
Amarasinghe GK, De Guzman RN, Turner RB, Chancellor
KJ, Wu ZR, Summers MF |
(2000) "NMR
structure of the HIV-1 nucleocapsid protein bound to
stem-loop SL2 of the psi-RNA packaging signal.
Implications for genome recognition."
J.Mol.Biol., 301, 491-511.
doi: 10.1006/jmbi.2000.3979.
|
NMR structure of the hiv-1 nucleocapsid protein bound
to stem-loop sl2 of the psi-RNA packaging signal.
implications for genome recognition . SNAP output
|
1f7u
|
ligase-RNA |
X-ray (2.2 Å) |
Delagoutte B, Moras D, Cavarelli J |
(2000) "tRNA
aminoacylation by arginyl-tRNA synthetase: induced
conformations during substrates binding." EMBO
J., 19, 5599-5610. doi: 10.1093/emboj/19.21.5599.
|
Crystal structure of the arginyl-trna synthetase
complexed with the trna(arg) and l-arg . SNAP output
|
1f7v
|
ligase-RNA |
X-ray (2.9 Å) |
Delagoutte B, Moras D, Cavarelli J |
(2000) "tRNA
aminoacylation by arginyl-tRNA synthetase: induced
conformations during substrates binding." EMBO
J., 19, 5599-5610. doi: 10.1093/emboj/19.21.5599.
|
Crystal structure of yeast arginyl-trna synthetase
complexed with the trnaarg . SNAP output
|
1f7y
|
ribosome |
X-ray (2.8 Å) |
Ennifar E, Nikulin A, Tishchenko S, Serganov A,
Nevskaya N, Garber M, Ehresmann B, Ehresmann C, Nikonov
S, Dumas P |
(2000) "The
crystal structure of UUCG tetraloop."
J.Mol.Biol., 304, 35-42. doi:
10.1006/jmbi.2000.4204.
|
The crystal structure of two uucg loops highlights the
role played by 2'-hydroxyl groups in its unusual
stability . SNAP
output
|
1f8v
|
virus-RNA |
X-ray (3.0 Å) |
Tang L, Johnson KN, Ball LA, Lin T, Yeager M, Johnson
JE |
(2001) "The
structure of pariacoto virus reveals a dodecahedral
cage of duplex RNA." Nat.Struct.Biol.,
8, 77-83. doi: 10.1038/83089.
|
The structure of pariacoto virus reveals a dodecahedral
cage of duplex RNA . SNAP output
|
1feu
|
ribosome |
X-ray (2.3 Å) |
Fedorov R, Meshcheryakov V, Gongadze G, Fomenkova N,
Nevskaya N, Selmer M, Laurberg M, Kristensen O,
Al-Karadaghi S, Liljas A, Garber M, Nikonov S |
(2001) "Structure
of ribosomal protein TL5 complexed with RNA provides
new insights into the CTC family of stress
proteins." Acta Crystallogr.,Sect.D,
57, 968-976. doi: 10.1107/S0907444901006291.
|
Crystal structure of ribosomal protein tl5, one of the
ctc family proteins, complexed with a fragment of 5s
rrna. . SNAP output
|
1ffy
|
ligase-RNA |
X-ray (2.2 Å) |
Silvian LF, Wang J, Steitz TA |
(1999) "Insights
into editing from an ile-tRNA synthetase structure with
tRNAile and mupirocin." Science,
285, 1074-1077. doi: 10.1126/science.285.5430.1074.
|
Insights into editing from an ile-trna synthetase
structure with trna(ile) and mupirocin . SNAP output
|
1fje
|
structural protein-RNA |
NMR |
Allain FH, Bouvet P, Dieckmann T, Feigon J |
(2000) "Molecular
basis of sequence-specific recognition of pre-ribosomal
RNA by nucleolin." EMBO J.,
19, 6870-6881. doi: 10.1093/emboj/19.24.6870.
|
Solution structure of nucleolin rbd12 in complex with
snre RNA . SNAP
output
|
1fjg
|
ribosome |
X-ray (3.0 Å) |
Carter AP, Clemons Jr WM, Brodersen DE, Morgan-Warren
RJ, Wimberly BT, Ramakrishnan V |
(2000) "Functional
insights from the structure of the 30S ribosomal
subunit and its interactions with antibiotics."
Nature, 407, 340-348. doi:
10.1038/35030019.
|
Structure of the thermus thermophilus 30s ribosomal
subunit in complex with the antibiotics streptomycin,
spectinomycin, and paromomycin . SNAP output
|
1fka
|
ribosome |
X-ray (3.3 Å) |
Schluenzen F, Tocilj A, Zarivach R, Harms J,
Gluehmann M, Janell D, Bashan A, Bartels H, Agmon I,
Franceschi F, Yonath A |
(2000) "Structure
of functionally activated small ribosomal subunit at
3.3 angstroms resolution."
Cell(Cambridge,Mass.), 102,
615-623. doi: 10.1016/S0092-8674(00)00084-2.
|
Structure of functionally activated small ribosomal
subunit at 3.3 Å resolution . SNAP output
|
1fnx
|
immune system-RNA |
NMR |
Inoue M, Hirao M, Kasashima K, Kim I-S, Kawai G,
Kigawa T, Sakamoto H, Muto Y, Yokoyama S |
(2000) "Solution structure of mouse HuC RNA-binding
domains complexed with an AU-Rich element reveals
determinants of neuronal differentiation." |
Solution structure of the huc rbd1-rbd2 complexed with
the au-rich element . SNAP output
|
1fxl
|
transcription-RNA |
X-ray (1.8 Å) |
Wang X, Tanaka Hall TM |
(2001) "Structural
basis for recognition of AU-rich element RNA by the HuD
protein." Nat.Struct.Biol.,
8, 141-145. doi: 10.1038/84131.
|
Crystal structure of hud and au-rich element of the
c-fos RNA . SNAP
output
|
1g1x
|
ribosome |
X-ray (2.6 Å) |
Agalarov SC, Sridhar Prasad G, Funke PM, Stout CD,
Williamson JR |
(2000) "Structure
of the S15,S6,S18-rRNA complex: assembly of the 30S
ribosome central domain." Science,
288, 107-112. doi: 10.1126/science.288.5463.107.
|
Structure of ribosomal proteins s15, s6, s18, and 16s
ribosomal RNA . SNAP
output
|
1g2e
|
transcription-RNA |
X-ray (2.3 Å) |
Wang X, Tanaka Hall TM |
(2001) "Structural
basis for recognition of AU-rich element RNA by the HuD
protein." Nat.Struct.Biol.,
8, 141-145. doi: 10.1038/84131.
|
Crystal structure of hud and au-rich element of the
tumor necrosis factor alpha RNA . SNAP output
|
1g59
|
ligase-RNA |
X-ray (2.4 Å) |
Sekine S, Nureki O, Shimada A, Vassylyev DG, Yokoyama
S |
(2001) "Structural
basis for anticodon recognition by discriminating
glutamyl-tRNA synthetase."
Nat.Struct.Biol., 8, 203-206.
doi: 10.1038/84927.
|
Glutamyl-trna synthetase complexed with trna(glu). .
SNAP output
|
1g70
|
viral protein-RNA |
NMR |
Gosser Y, Hermann T, Majumdar A, Hu W, Frederick R,
Jiang F, Xu W, Patel DJ |
(2001) "Peptide-triggered
conformational switch in HIV-1 RRE RNA complexes."
Nat.Struct.Biol., 8, 146-150.
doi: 10.1038/84138.
|
Complex of hiv-1 rre-iib RNA with rsg-1.2 peptide .
SNAP output
|
1gax
|
ligase-RNA |
X-ray (2.9 Å) |
Fukai S, Nureki O, Sekine S, Shimada A, Tao J,
Vassylyev DG, Yokoyama S |
(2000) "Structural
basis for double-sieve discrimination of L-valine from
L-isoleucine and L-threonine by the complex of
tRNA(Val) and valyl-tRNA synthetase."
Cell(Cambridge,Mass.), 103,
793-803. doi: 10.1016/S0092-8674(00)00182-3.
|
Crystal structure of thermus thermophilus valyl-trna
synthetase complexed with trna(val) and valyl-adenylate
analogue . SNAP
output
|
1gtf
|
RNA binding protein-RNA |
X-ray (1.75 Å) |
Hopcroft NH, Wendt AL, Gollnick P, Antson AA |
(2002) "Specificity
of Trap-RNA Interactions: Crystal Structures of Two
Complexes with Different RNA Sequences." Acta
Crystallogr.,Sect.D, 58, 615.
doi: 10.1107/S0907444902003189.
|
The structure of the trp RNA-binding attenuation
protein (trap) bound to a 53-nucleotide RNA molecule
containing gaguu repeats . SNAP output
|
1gtn
|
RNA binding protein-RNA |
X-ray (2.5 Å) |
Hopcroft NH, Wendt AL, Gollnick P, Antson AA |
(2002) "Specificity
of Trap-RNA Interactions: Crystal Structures of Two
Complexes with Different RNA Sequences." Acta
Crystallogr.,Sect.D, 58, 615.
doi: 10.1107/S0907444902003189.
|
Structure of the trp RNA-binding attenuation protein
(trap) bound to an RNA molecule containing 11 gagcc
repeats . SNAP
output
|
1gtr
|
complex (ligase-trna) |
X-ray (2.5 Å) |
Rould MA, Perona JJ, Steitz TA |
(1991) "Structural
basis of anticodon loop recognition by glutaminyl-tRNA
synthetase." Nature, 352,
213-218. doi: 10.1038/352213a0.
|
Structural basis of anticodon loop recognition by
glutaminyl-trna synthetase . SNAP output
|
1gts
|
ligase-RNA |
X-ray (2.8 Å) |
Perona JJ, Rould MA, Steitz TA |
(1993) "Structural
basis for transfer RNA aminoacylation by Escherichia
coli glutaminyl-tRNA synthetase."
Biochemistry, 32, 8758-8771.
doi: 10.1021/bi00085a006.
|
Structural basis for transfer RNA aminoaceylation by
escherichia coli glutaminyl-trna synthetase . SNAP output
|
1h2c
|
virus-viral protein |
X-ray (1.6 Å) |
Gomis-Ruth FX, Dessen A, Timmins J, Bracher A,
Kolesnikowa L, Becker S, Klenk HD, Weissenhorn W |
(2003) "The
Matrix Protein Vp40 from Ebola Virus Octamerizes Into
Pore-Like Structures with Specific RNA Binding
Properties." Structure,
11, 423. doi: 10.1016/S0969-2126(03)00050-9.
|
Ebola virus matrix protein vp40 n-terminal domain in
complex with RNA (high-resolution vp40[55-194]
variant). . SNAP
output
|
1h2d
|
virus-viral protein |
X-ray (2.6 Å) |
Gomis-Ruth FX, Dessen A, Timmins J, Bracher A,
Kolesnikowa L, Becker S, Klenk HD, Weissenhorn W |
(2003) "The
Matrix Protein Vp40 from Ebola Virus Octamerizes Into
Pore-Like Structures with Specific RNA Binding
Properties." Structure,
11, 423. doi: 10.1016/S0969-2126(03)00050-9.
|
Ebola virus matrix protein vp40 n-terminal domain in
complex with RNA (low-resolution vp40[31-212] variant).
. SNAP output
|
1h3e
|
ligase |
X-ray (2.9 Å) |
Yaremchuk A, Kriklivyi I, Tukalo M, Cusack S |
(2002) "Class I
Tyrosyl-tRNA Synthetase Has a Class II Mode or tRNA
Recognition." Embo J.,
21, 3829. doi: 10.1093/EMBOJ/CDF373.
|
Tyrosyl-trna synthetase from thermus thermophilus
complexed with wild-type trnatyr(gua) and with atp and
tyrosinol . SNAP
output
|
1h4q
|
aminoacyl-trna synthetase |
X-ray (3.0 Å) |
Yaremchuk A, Tukalo M, Grotli M, Cusack S |
(2001) "A
Succession of Substrate Induced Conformational Changes
Ensures the Amino Acid Specificity of Thermus
Thermophilus Prolyl-tRNA Synthetase: Comparison with
Histidyl-tRNA Synthetase." J.Mol.Biol.,
309, 989. doi: 10.1006/JMBI.2001.4712.
|
Prolyl-trna synthetase from thermus thermophilus
complexed with trnapro(cgg), atp and prolinol .
SNAP output
|
1h4s
|
aminoacyl-trna synthetase |
X-ray (2.85 Å) |
Yaremchuk A, Tukalo M, Grotli M, Cusack S |
(2001) "A
Succession of Substrate Induced Conformational Changes
Ensures the Amino Acid Specificity of Thermus
Thermophilus Prolyl-tRNA Synthetase: Comparison with
Histidyl-tRNA Synthetase." J.Mol.Biol.,
309, 989. doi: 10.1006/JMBI.2001.4712.
|
Prolyl-trna synthetase from thermus thermophilus
complexed with trnapro(cgg) and a prolyl-adenylate
analogue . SNAP
output
|
1hc8
|
ribosome |
X-ray (2.8 Å) |
Conn GL, Gittis AG, Lattman EE, Misra VK, Draper
DE |
(2002) "A
Compact RNA Tertiary Structure Contains a Buried
Backbone-K+ Complex." J.Mol.Biol.,
318, 963. doi: 10.1016/S0022-2836(02)00147-X.
|
Crystal structure of a conserved ribosomal protein-RNA
complex . SNAP
output
|
1hji
|
bacteriophage hk022 |
NMR |
Faber C, Schaerpf M, Becker T, Sticht H, Roesch
P |
(2001) "The
Structure of the Coliphage Hk022 Nun
Protein-Lambda-Phage Boxb RNA Complex. Implications for
the Mechanism of Transcription Termination."
J.Biol.Chem., 276, 32064.
doi: 10.1074/JBC.M102975200.
|
Bacteriophage hk022 nun-protein-nutboxb-RNA complex .
SNAP output
|
1hnw
|
ribosome |
X-ray (3.4 Å) |
Brodersen DE, Clemons Jr WM, Carter AP, Morgan-Warren
RJ, Wimberly BT, Ramakrishnan V |
(2000) "The
structural basis for the action of the antibiotics
tetracycline, pactamycin, and hygromycin B on the 30S
ribosomal subunit." Cell(Cambridge,Mass.),
103, 1143-1154. doi: 10.1016/S0092-8674(00)00216-6.
|
Structure of the thermus thermophilus 30s ribosomal
subunit in complex with tetracycline . SNAP output
|
1hnx
|
ribosome |
X-ray (3.4 Å) |
Brodersen DE, Clemons Jr WM, Carter AP, Morgan-Warren
RJ, Wimberly BT, Ramakrishnan V |
(2000) "The
structural basis for the action of the antibiotics
tetracycline, pactamycin, and hygromycin B on the 30S
ribosomal subunit." Cell(Cambridge,Mass.),
103, 1143-1154. doi: 10.1016/S0092-8674(00)00216-6.
|
Structure of the thermus thermophilus 30s ribosomal
subunit in complex with pactamycin . SNAP output
|
1hnz
|
ribosome |
X-ray (3.3 Å) |
Brodersen DE, Clemons Jr WM, Carter AP, Morgan-Warren
RJ, Wimberly BT, Ramakrishnan V |
(2000) "The
structural basis for the action of the antibiotics
tetracycline, pactamycin, and hygromycin B on the 30S
ribosomal subunit." Cell(Cambridge,Mass.),
103, 1143-1154. doi: 10.1016/S0092-8674(00)00216-6.
|
Structure of the thermus thermophilus 30s ribosomal
subunit in complex with hygromycin b . SNAP output
|
1hq1
|
signaling protein-RNA |
X-ray (1.52 Å) |
Batey RT, Sagar MB, Doudna JA |
(2001) "Structural
and energetic analysis of RNA recognition by a
universally conserved protein from the signal
recognition particle." J.Mol.Biol.,
307, 229-246. doi: 10.1006/jmbi.2000.4454.
|
Structural and energetic analysis of RNA recognition by
a universally conserved protein from the signal
recognition particle . SNAP output
|
1hr0
|
ribosome |
X-ray (3.2 Å) |
Carter AP, Clemons Jr WM, Brodersen DE, Morgan-Warren
RJ, Hartsch T, Wimberly BT, Ramakrishnan V |
(2001) "Crystal
structure of an initiation factor bound to the 30S
ribosomal subunit." Science,
291, 498-501. doi: 10.1126/science.1057766.
|
Crystal structure of initiation factor if1 bound to the
30s ribosomal subunit . SNAP output
|
1hvu
|
transferase-RNA |
X-ray (4.75 Å) |
Jaeger J, Restle T, Steitz TA |
(1998) "The
structure of HIV-1 reverse transcriptase complexed with
an RNA pseudoknot inhibitor." EMBO J.,
17, 4535-4542. doi: 10.1093/emboj/17.15.4535.
|
Human immunodeficiency virus type 1 reverse
transcriptase complexed with a 33-base nucleotide RNA
pseudoknot . SNAP
output
|
1i5l
|
RNA binding protein-RNA |
X-ray (2.75 Å) |
Toro I, Thore S, Mayer C, Basquin J, Seraphin B, Suck
D |
(2001) "RNA
binding in an Sm core domain: X-ray structure and
functional analysis of an archaeal Sm protein
complex." EMBO J., 20,
2293-2303. doi: 10.1093/emboj/20.9.2293.
|
Crystal structure of an sm-like protein (af-sm1) from
archaeoglobus fulgidus complexed with short poly-u RNA
. SNAP output
|
1i6u
|
ribosome |
X-ray (2.6 Å) |
Tishchenko S, Nikulin A, Fomenkova N, Nevskaya N,
Nikonov O, Dumas P, Moine H, Ehresmann B, Ehresmann C,
Piendl W, Lamzin V, Garber M, Nikonov S |
(2001) "Detailed
analysis of RNA-protein interactions within the
ribosomal protein S8-rRNA complex from the archaeon
Methanococcus jannaschii." J.Mol.Biol.,
311, 311-324. doi: 10.1006/jmbi.2001.4877.
|
RNA-protein interactions: the crystal structure of
ribosomal protein s8-rrna complex from methanococcus
jannaschii . SNAP
output
|
1i94
|
ribosome |
X-ray (3.2 Å) |
Pioletti M, Schlunzen F, Harms J, Zarivach R,
Gluhmann M, Avila H, Bashan A, Bartels H, Auerbach T,
Jacobi C, Hartsch T, Yonath A, Franceschi F |
(2001) "Crystal
structures of complexes of the small ribosomal subunit
with tetracycline, edeine and IF3." EMBO
J., 20, 1829-1839. doi: 10.1093/emboj/20.8.1829.
|
Crystal structures of the small ribosomal subunit with
tetracycline, edeine and if3 . SNAP output
|
1i9f
|
de-novo protein-RNA |
NMR |
Zhang Q, Harada K, Cho HS, Frankel AD, Wemmer DE |
(2001) "Structural
characterization of the complex of the Rev response
element RNA with a selected peptide."
Chem.Biol., 8, 511-520. doi:
10.1016/S1074-5521(01)00027-8.
|
Structural characterization of the complex of the rev
response element RNA with a selected peptide . SNAP output
|
1ibk
|
ribosome |
X-ray (3.31 Å) |
Ogle JM, Brodersen DE, Clemons Jr WM, Tarry MJ,
Carter AP, Ramakrishnan V |
(2001) "Recognition
of cognate transfer RNA by the 30S ribosomal
subunit." Science, 292,
897-902. doi: 10.1126/science.1060612.
|
Structure of the thermus thermophilus 30s ribosomal
subunit in complex with the antibiotic paromomycin .
SNAP output
|
1ibl
|
ribosome |
X-ray (3.11 Å) |
Ogle JM, Brodersen DE, Clemons Jr WM, Tarry MJ,
Carter AP, Ramakrishnan V |
(2001) "Recognition
of cognate transfer RNA by the 30S ribosomal
subunit." Science, 292,
897-902. doi: 10.1126/science.1060612.
|
Structure of the thermus thermophilus 30s ribosomal
subunit in complex with a messenger RNA fragment and
cognate transfer RNA anticodon stem-loop bound at the a
site and with the antibiotic paromomycin . SNAP output
|
1ibm
|
ribosome |
X-ray (3.31 Å) |
Ogle JM, Brodersen DE, Clemons Jr WM, Tarry MJ,
Carter AP, Ramakrishnan V |
(2001) "Recognition
of cognate transfer RNA by the 30S ribosomal
subunit." Science, 292,
897-902. doi: 10.1126/science.1060612.
|
Structure of the thermus thermophilus 30s ribosomal
subunit in complex with a messenger RNA fragment and
cognate transfer RNA anticodon stem-loop bound at the a
site . SNAP output
|
1il2
|
ligase-RNA |
X-ray (2.6 Å) |
Moulinier L, Eiler S, Eriani G, Gangloff J, Thierry
JC, Gabriel K, McClain WH, Moras D |
(2001) "The
structure of an AspRS-tRNA(Asp) complex reveals a
tRNA-dependent control mechanism." EMBO
J., 20, 5290-5301. doi: 10.1093/emboj/20.18.5290.
|
Crystal structure of the e. coli aspartyl-trna
synthetase:yeast trnaasp:aspartyl-adenylate complex .
SNAP output
|
1ivs
|
ligase-RNA |
X-ray (2.9 Å) |
Fukai S, Nureki O, Sekine S-I, Shimada A, Vassylyev
DG, Yokoyama S |
(2003) "Mechanism
of molecular interactions for tRNA(Val) recognition by
valyl-tRNA synthetase." RNA,
9, 100-111. doi: 10.1261/rna.2760703.
|
Crystal structure of thermus thermophilus valyl-trna
synthetase complexed with trna(val) and valyl-adenylate
analogue . SNAP
output
|
1j1u
|
ligase-RNA |
X-ray (1.95 Å) |
Kobayashi T, Nureki O, Ishitani R, Yaremchuk A,
Tukalo M, Cusack S, Sakamoto K, Yokoyama S |
(2003) "Structural
basis for orthogonal tRNA specificities of tyrosyl-tRNA
synthetases for genetic code expansion."
NAT.STRUCT.BIOL., 10,
425-432. doi: 10.1038/nsb934.
|
Crystal structure of archaeal tyrosyl-trna synthetase
complexed with trna(tyr) and l-tyrosine . SNAP output
|
1j2b
|
transferase-RNA |
X-ray (3.3 Å) |
Ishitani R, Nureki O, Nameki N, Okada N, Nishimura S,
Yokoyama S |
(2003) "Alternative
Tertiary Structure of tRNA for Recognition by a
Posttranscriptional Modification Enzyme."
Cell(Cambridge,Mass.), 113,
383-394. doi: 10.1016/S0092-8674(03)00280-0.
|
Crystal structure of archaeosine trna-guanine
transglycosylase complexed with lambda-form trna(val) .
SNAP output
|
1j5e
|
ribosome |
X-ray (3.05 Å) |
Wimberly BT, Brodersen DE, Clemons Jr WM,
Morgan-Warren RJ, Carter AP, Vonrhein C, Hartsch T,
Ramakrishnan V |
(2000) "Structure
of the 30S ribosomal subunit." Nature,
407, 327-339. doi: 10.1038/35030006.
|
Structure of the thermus thermophilus 30s ribosomal
subunit . SNAP
output
|
1jbr
|
hydrolase-RNA |
X-ray (2.15 Å) |
Yang X, Gerczei T, Glover LT, Correll CC |
(2001) "Crystal
structures of restrictocin-inhibitor complexes with
implications for RNA recognition and base
flipping." Nat.Struct.Biol.,
8, 968-973. doi: 10.1038/nsb1101-968.
|
Crystal structure of the ribotoxin restrictocin and a
31-mer srd RNA inhibitor . SNAP output
|
1jbs
|
hydrolase-RNA |
X-ray (1.97 Å) |
Yang X, Gerczei T, Glover LT, Correll CC |
(2001) "Crystal
structures of restrictocin-inhibitor complexes with
implications for RNA recognition and base
flipping." Nat.Struct.Biol.,
8, 968-973. doi: 10.1038/nsb1101-968.
|
Crystal structure of ribotoxin restrictocin and a
29-mer srd RNA analog . SNAP output
|
1jbt
|
hydrolase-RNA |
X-ray (2.7 Å) |
Yang X, Gerczei T, Glover LT, Correll CC |
(2001) "Crystal
structures of restrictocin-inhibitor complexes with
implications for RNA recognition and base
flipping." Nat.Struct.Biol.,
8, 968-973. doi: 10.1038/nsb1101-968.
|
Crystal structure of ribotoxin restrictocin complexed
with a 29-mer sarcin-ricin domain RNA analog . SNAP output
|
1jid
|
signaling protein-RNA |
X-ray (1.8 Å) |
Wild K, Sinning I, Cusack S |
(2001) "Crystal
structure of an early protein-RNA assembly complex of
the signal recognition particle." Science,
294, 598-601. doi: 10.1126/science.1063839.
|
Human srp19 in complex with helix 6 of human srp RNA .
SNAP output
|
1jj2
|
ribosome |
X-ray (2.4 Å) |
Klein DJ, Schmeing TM, Moore PB, Steitz TA |
(2001) "The
kink-turn: a new RNA secondary structure motif."
EMBO J., 20, 4214-4221. doi:
10.1093/emboj/20.15.4214.
|
Fully refined crystal structure of the haloarcula
marismortui large ribosomal subunit at 2.4 angstrom
resolution . SNAP
output
|
1k1g
|
gene regulation-RNA |
NMR |
Liu Z, Luyten I, Bottomley MJ, Messias AC,
Houngninou-Molango S, Sprangers R, Zanier K, Kramer A,
Sattler M |
(2001) "Structural
basis for recognition of the intron branch site RNA by
splicing factor 1." Science,
294, 1098-1102. doi: 10.1126/science.1064719.
|
Structural basis for recognition of the intron branch
site RNA by splicing factor 1 . SNAP output
|
1k73
|
ribosome |
X-ray (3.01 Å) |
Hansen J, Moore PB, Steitz TA |
(2003) "Structures
of Five Antibiotics Bound at the Peptidyl Transferase
Center of the Large Ribosomal Subunit."
J.Mol.Biol., 330, 1061-1075.
doi: 10.1016/S0022-2836(03)00668-5.
|
Co-crystal structure of anisomycin bound to the 50s
ribosomal subunit . SNAP
output
|
1k8a
|
ribosome |
X-ray (3.0 Å) |
Hansen JL, Ippolito JA, Ban N, Nissen P, Moore PB,
Steitz TA |
(2002) "The
structures of four macrolide antibiotics bound to the
large ribosomal subunit." Mol.Cell,
10, 117-128. doi: 10.1016/S1097-2765(02)00570-1.
|
Co-crystal structure of carbomycin a bound to the 50s
ribosomal subunit of haloarcula marismortui . SNAP output
|
1k8w
|
lyase-RNA |
X-ray (1.85 Å) |
Hoang C, Ferre-D'Amare AR |
(2001) "Cocrystal
structure of a tRNA Psi55 pseudouridine synthase:
nucleotide flipping by an RNA-modifying enzyme."
Cell(Cambridge,Mass.), 107,
929-939. doi: 10.1016/S0092-8674(01)00618-3.
|
Crystal structure of the e. coli pseudouridine synthase
trub bound to a t stem-loop RNA . SNAP output
|
1k9m
|
ribosome |
X-ray (3.0 Å) |
Hansen JL, Ippolito JA, Ban N, Nissen P, Moore PB,
Steitz TA |
(2002) "The
structures of four macrolide antibiotics bound to the
large ribosomal subunit." Mol.Cell,
10, 117-128. doi: 10.1016/S1097-2765(02)00570-1.
|
Co-crystal structure of tylosin bound to the 50s
ribosomal subunit of haloarcula marismortui . SNAP output
|
1kd1
|
ribosome |
X-ray (3.0 Å) |
Hansen JL, Ippolito JA, Ban N, Nissen P, Moore PB,
Steitz TA |
(2002) "The
structures of four macrolide antibiotics bound to the
large ribosomal subunit." Mol.Cell,
10, 117-128. doi: 10.1016/S1097-2765(02)00570-1.
|
Co-crystal structure of spiramycin bound to the 50s
ribosomal subunit of haloarcula marismortui . SNAP output
|
1knz
|
viral protein-RNA |
X-ray (2.45 Å) |
Deo RC, Groft CM, Rajashankar KR, Burley SK |
(2002) "Recognition
of the rotavirus mRNA 3' consensus by an asymmetric
NSP3 homodimer." Cell(Cambridge,Mass.),
108, 71-81. doi: 10.1016/S0092-8674(01)00632-8.
|
Recognition of the rotavirus mrna 3' consensus by an
asymmetric nsp3 homodimer . SNAP output
|
1kog
|
ligase-RNA |
X-ray (3.5 Å) |
Torres-Larios A, Dock-Bregeon AC, Romby P, Rees B,
Sankaranarayanan R, Caillet J, Springer M, Ehresmann C,
Ehresmann B, Moras D |
(2002) "Structural
basis of translational control by Escherichia coli
threonyl tRNA synthetase."
Nat.Struct.Biol., 9, 343-347.
|
Crystal structure of e. coli threonyl-trna synthetase
interacting with the essential domain of its mrna
operator . SNAP
output
|
1kq2
|
translation-RNA |
X-ray (2.71 Å) |
Schumacher MA, Pearson RF, Moller T, Valentin-Hansen
P, Brennan RG |
(2002) "Structures
of the pleiotropic translational regulator Hfq and an
Hfq-RNA complex: a bacterial Sm-like protein."
EMBO J., 21, 3546-3556. doi:
10.1093/emboj/cdf322.
|
Crystal structure of an hfq-RNA complex . SNAP output
|
1kqs
|
ribosome |
X-ray (3.1 Å) |
Schmeing TM, Seila AC, Hansen JL, Freeborn B, Soukup
JK, Scaringe SA, Strobel SA, Moore PB, Steitz TA |
(2002) "A
pre-translocational intermediate in protein synthesis
observed in crystals of enzymatically active 50S
subunits." Nat.Struct.Biol.,
9, 225-230.
|
The haloarcula marismortui 50s complexed with a
pretranslocational intermediate in protein synthesis .
SNAP output
|
1kuq
|
ribosome |
X-ray (2.84 Å) |
Revtovich SV, Nikulin AD, Nikonov SV |
(2004) "Role of
N-terminal helix in interaction of ribosomal protein
S15 with 16S rRNA." Biochemistry Mosc.,
69, 1319-1323. doi: 10.1007/s10541-005-0076-5.
|
Crystal structure of t3c mutant s15 ribosomal protein
in complex with 16s rrna . SNAP output
|
1l1c
|
transcription-RNA |
NMR |
Yang Y, Declerck N, Manival X, Aymerich S, Kochoyan
M |
(2002) "Solution
structure of the LicT-RNA antitermination complex: CAT
clamping RAT." EMBO J.,
21, 1987-1997. doi: 10.1093/emboj/21.8.1987.
|
Structure of the lict bacterial antiterminator protein
in complex with its RNA target . SNAP output
|
1l9a
|
signaling protein-RNA |
X-ray (2.9 Å) |
Oubridge C, Kuglstatter A, Jovine L, Nagai K |
(2002) "Crystal
structure of SRP19 in complex with the S domain of SRP
RNA and its implication for the assembly of the signal
recognition particle." Mol.Cell,
9, 1251-1261. doi: 10.1016/S1097-2765(02)00530-0.
|
Crystal structure of srp19 in complex with the s domain
of signal recognition particle RNA . SNAP output
|
1laj
|
virus-RNA |
X-ray (3.4 Å) |
Lucas RW, Larson SB, Canady MA, McPherson A |
(2002) "The
Structure of Tomato Aspermy Virus by X-Ray
Crystallography." J.STRUCT.BIOL.,
139, 90-102. doi: 10.1016/S1047-8477(02)00561-0.
|
The structure of tomato aspermy virus by x-ray
crystallography . SNAP
output
|
1lng
|
signaling protein-RNA |
X-ray (2.3 Å) |
Hainzl T, Huang S, Sauer-Eriksson AE |
(2002) "Structure
of the SRP19 RNA complex and implications for signal
recognition particle assembly." Nature,
417, 767-771. doi: 10.1038/nature00768.
|
Crystal structure of the srp19-7s.s srp RNA complex of
m. jannaschii . SNAP
output
|
1m1k
|
ribosome |
X-ray (3.2 Å) |
Hansen JL, Ippolito JA, Ban N, Nissen P, Moore PB,
Steitz TA |
(2002) "The
structures of four macrolide antibiotics bound to the
large ribosomal subunit." Mol.Cell,
10, 117-128. doi: 10.1016/S1097-2765(02)00570-1.
|
Co-crystal structure of azithromycin bound to the 50s
ribosomal subunit of haloarcula marismortui . SNAP output
|
1m5k
|
translation-RNA |
X-ray (2.4 Å) |
Rupert PB, Massey AP, Sigurdsson ST, Ferre-D'Amare
AR |
(2002) "Transition
state stabilization by a catalytic RNA."
Science, 298, 1421-1424. doi:
10.1126/science.1076093.
|
Crystal structure of a hairpin ribozyme in the
catalytically-active conformation . SNAP output
|
1m5o
|
translation-RNA |
X-ray (2.2 Å) |
Rupert PB, Massey AP, Sigurdsson ST, Ferre-D'Amare
AR |
(2002) "Transition
state stabilization by a catalytic RNA."
Science, 298, 1421-1424. doi:
10.1126/science.1076093.
|
Transition state stabilization by a catalytic RNA .
SNAP output
|
1m5p
|
translation-RNA |
X-ray (2.6 Å) |
Rupert PB, Massey AP, Sigurdsson ST, Ferre-D'Amare
AR |
(2002) "Transition
state stabilization by a catalytic RNA."
Science, 298, 1421-1424. doi:
10.1126/science.1076093.
|
Transition state stabilization by a catalytic RNA .
SNAP output
|
1m5v
|
translation-RNA |
X-ray (2.4 Å) |
Rupert PB, Massey AP, Sigurdsson ST, Ferre-D'Amare
AR |
(2002) "Transition
state stabilization by a catalytic RNA."
Science, 298, 1421-1424. doi:
10.1126/science.1076093.
|
Transition state stabilization by a catalytic RNA .
SNAP output
|
1m8v
|
RNA binding protein-RNA |
X-ray (2.6 Å) |
Thore S, Mayer C, Sauter C, Weeks S, Suck D |
(2003) "Crystal
Structure of Pyrococcus abyssii Sm core and its Complex
with RNA: Common Features of RNA-binding in Archaea and
Eukarya." J.Biol.Chem.,
278, 1239-1247. doi: 10.1074/jbc.M207685200.
|
Structure of pyrococcus abyssii sm protein in complex
with a uridine heptamer . SNAP output
|
1m8w
|
RNA binding protein-RNA |
X-ray (2.2 Å) |
Wang X, McLachlan J, Zamore PD, Hall TMT |
(2002) "MODULAR
RECOGNITION OF RNA BY A HUMAN PUMILIO-HOMOLOGY
DOMAIN." CELL(CAMBRIDGE,MASS.),
110, 501-512. doi: 10.1016/S0092-8674(02)00873-5.
|
Crystal structure of the pumilio-homology domain from
human pumilio1 in complex with nre1-19 RNA . SNAP output
|
1m8x
|
RNA binding protein-RNA |
X-ray (2.2 Å) |
Wang X, McLachlan J, Zamore PD, Hall TMT |
(2002) "MODULAR
RECOGNITION OF RNA BY A HUMAN PUMILIO-HOMOLOGY
DOMAIN." CELL(CAMBRIDGE,MASS.),
110, 501-512. doi: 10.1016/S0092-8674(02)00873-5.
|
Crystal structure of the pumilio-homology domain from
human pumilio1 in complex with nre1-14 RNA . SNAP output
|
1m8y
|
RNA binding protein-RNA |
X-ray (2.6 Å) |
Wang X, McLachlan J, Zamore PD, Hall TMT |
(2002) "MODULAR
RECOGNITION OF RNA BY A HUMAN PUMILIO-HOMOLOGY
DOMAIN." CELL(CAMBRIDGE,MASS.),
110, 501-512. doi: 10.1016/S0092-8674(02)00873-5.
|
Crystal structure of the pumilio-homology domain from
human pumilio1 in complex with nre2-10 RNA . SNAP output
|
1m90
|
ribosome |
X-ray (2.8 Å) |
Hansen JL, Schmeing TM, Moore PB, Steitz TA |
(2002) "Structural
insights into peptide bond formation."
Proc.Natl.Acad.Sci.USA, 99,
11670-11675. doi: 10.1073/pnas.172404099.
|
Co-crystal structure of cca-phe-caproic acid-biotin and
sparsomycin bound to the 50s ribosomal subunit .
SNAP output
|
1mfq
|
signaling protein-RNA |
X-ray (3.1 Å) |
Kuglstatter A, Oubridge C, Nagai K |
(2002) "Induced
structural changes of 7SL RNA during the assembly of
human signal recognition particle."
Nat.Struct.Biol., 9, 740-744.
doi: 10.1038/nsb843.
|
Crystal structure analysis of a ternary s-domain
complex of human signal recognition particle . SNAP output
|
1mji
|
ribosome |
X-ray (2.5 Å) |
Perederina A, Nevskaya N, Nikonov O, Nikulin A, Dumas
P, Yao M, Tanaka I, Garber M, Gongadze G, Nikonov S |
(2002) "Detailed
analysis of RNA-protein interactions within the
bacterial ribosomal protein L5/5S rRNA complex."
RNA, 8, 1548-1557.
|
Detailed analysis of RNA-protein interactions within
the bacterial ribosomal protein l5-5s rrna complex .
SNAP output
|
1mms
|
ribosome |
X-ray (2.57 Å) |
Wimberly BT, Guymon R, McCutcheon JP, White SW,
Ramakrishnan V |
(1999) "A
detailed view of a ribosomal active site: the structure
of the L11-RNA complex."
Cell(Cambridge,Mass.), 97,
491-502. doi: 10.1016/S0092-8674(00)80759-X.
|
Crystal structure of the ribosomal protein l11-RNA
complex . SNAP
output
|
1mnb
|
viral protein-RNA |
NMR |
Puglisi JD, Chen L, Blanchard S, Frankel AD |
(1995) "Solution
structure of a bovine immunodeficiency virus Tat-TAR
peptide-RNA complex." Science,
270, 1200-1203.
|
Biv tat peptide (residues 68-81), NMR, minimized
average structure . SNAP
output
|
1mzp
|
ribosome |
X-ray (2.65 Å) |
Nikulin A, Eliseikina I, Tishchenko S, Nevskaya N,
Davydova N, Platonova O, Piendl W, Selmer M, Liljas A,
Drygin D, Zimmermann R, Garber M, Nikonov S |
(2003) "Structure
of the L1 protuberance in the ribosome."
Nat.Struct.Biol., 10,
104-108. doi: 10.1038/nsb886.
|
Structure of the l1 protuberance in the ribosome .
SNAP output
|
1n1h
|
transferase-RNA |
X-ray (2.8 Å) |
Tao Y, Farsetta DL, Nibert ML, Harrison SC |
(2002) "RNA
Synthesis in a Cage--Structural Studies of Reovirus
Polymerase [lambda] 3."
Cell(Cambridge,Mass.), 111,
733-745. doi: 10.1016/S0092-8674(02)01110-8.
|
Initiation complex of polymerase lambda3 from reovirus
. SNAP output
|
1n32
|
ribosome |
X-ray (3.0 Å) |
Ogle JM, Murphy IV FV, Tarry MJ, Ramakrishnan V |
(2002) "Selection
of tRNA by the Ribosome Requires a Transition from an
Open to a Closed Form."
Cell(Cambridge,Mass.), 111,
721-732. doi: 10.1016/S0092-8674(02)01086-3.
|
Structure of the thermus thermophilus 30s ribosomal
subunit bound to codon and near-cognate transfer RNA
anticodon stem-loop mismatched at the first codon
position at the a site with paromomycin . SNAP output
|
1n33
|
ribosome |
X-ray (3.35 Å) |
Ogle JM, Murphy IV FV, Tarry MJ, Ramakrishnan V |
(2002) "Selection
of tRNA by the Ribosome Requires a Transition from an
Open to a Closed Form."
Cell(Cambridge,Mass.), 111,
721-732. doi: 10.1016/S0092-8674(02)01086-3.
|
Structure of the thermus thermophilus 30s ribosomal
subunit bound to codon and near-cognate transfer RNA
anticodon stem-loop mismatched at the second codon
position at the a site with paromomycin . SNAP output
|
1n34
|
ribosome |
X-ray (3.8 Å) |
Ogle JM, Murphy IV FV, Tarry MJ, Ramakrishnan V |
(2002) "Selection
of tRNA by the Ribosome Requires a Transition from an
Open to a Closed Form."
Cell(Cambridge,Mass.), 111,
721-732. doi: 10.1016/S0092-8674(02)01086-3.
|
Structure of the thermus thermophilus 30s ribosomal
subunit in the presence of codon and
crystallographically disordered near-cognate transfer
RNA anticodon stem-loop mismatched at the first codon
position . SNAP
output
|
1n35
|
transferase-RNA |
X-ray (2.5 Å) |
Tao Y, Farsetta DL, Nibert ML, Harrison SC |
(2002) "RNA
Synthesis in a Cage--Structural Studies of Reovirus
Polymerase [lambda] 3."
Cell(Cambridge,Mass.), 111,
733-745. doi: 10.1016/S0092-8674(02)01110-8.
|
Lambda3 elongation complex with four phosphodiester
bond formed . SNAP
output
|
1n36
|
ribosome |
X-ray (3.65 Å) |
Ogle JM, Murphy IV FV, Tarry MJ, Ramakrishnan V |
(2002) "Selection
of tRNA by the Ribosome Requires a Transition from an
Open to a Closed Form."
Cell(Cambridge,Mass.), 111,
721-732. doi: 10.1016/S0092-8674(02)01086-3.
|
Structure of the thermus thermophilus 30s ribosomal
subunit in the presence of crystallographically
disordered codon and near-cognate transfer RNA
anticodon stem-loop mismatched at the second codon
position . SNAP
output
|
1n38
|
transferase-RNA |
X-ray (2.8 Å) |
Tao Y, Farsetta DL, Nibert ML, Harrison SC |
(2002) "RNA
Synthesis in a Cage--Structural Studies of Reovirus
Polymerase [lambda] 3."
Cell(Cambridge,Mass.), 111,
733-745. doi: 10.1016/S0092-8674(02)01110-8.
|
Reovirus polymerase lambda3 elongation complex with one
phosphodiester bond formed . SNAP output
|
1n77
|
ligase-RNA |
X-ray (2.4 Å) |
Sekine S, Nureki O, Dubois DY, Bernier S, Chenevert
R, Lapointe J, Vassylyev DG, Yokoyama S |
(2003) "ATP
binding by glutamyl-tRNA synthetase is switched to the
productive mode by tRNA binding." EMBO J.,
22, 676-688. doi: 10.1093/emboj/cdg053.
|
Crystal structure of thermus thermophilus glutamyl-trna
synthetase complexed with trna(glu) and atp. . SNAP output
|
1n78
|
ligase-RNA |
X-ray (2.1 Å) |
Sekine S, Nureki O, Dubois DY, Bernier S, Chenevert
R, Lapointe J, Vassylyev DG, Yokoyama S |
(2003) "ATP
binding by glutamyl-tRNA synthetase is switched to the
productive mode by tRNA binding." EMBO J.,
22, 676-688. doi: 10.1093/emboj/cdg053.
|
Crystal structure of thermus thermophilus glutamyl-trna
synthetase complexed with trna(glu) and glutamol-amp. .
SNAP output
|
1n8r
|
ribosome-antibiotic |
X-ray (3.0 Å) |
Hansen J, Moore PB, Steitz TA |
(2003) "Structures
of Five Antibiotics Bound at the Peptidyl Transferase
Center of the Large Ribosomal Subunit."
J.Mol.Biol., 330, 1061-1075.
doi: 10.1016/S0022-2836(03)00668-5.
|
Structure of large ribosomal subunit in complex with
virginiamycin m . SNAP
output
|
1nb7
|
transferase-RNA |
X-ray (2.9 Å) |
O'Farrell D, Trowbridge R, Rowlands D, Jager J |
(2003) "Substrate
complexes of hepatitis C virus RNA polymerase (HC-J4):
structural evidence for nucleotide import and de-novo
initiation." J.Mol.Biol.,
326, 1025-1035. doi: 10.1016/S0022-2836(02)01439-0.
|
Hc-j4 RNA polymerase complexed with short RNA template
strand . SNAP output
|
1nji
|
ribosome |
X-ray (3.0 Å) |
Hansen J, Moore PB, Steitz TA |
(2003) "Structures
of Five Antibiotics Bound at the Peptidyl Transferase
Center of the Large Ribosomal Subunit."
J.Mol.Biol., 330, 1061-1075.
doi: 10.1016/S0022-2836(03)00668-5.
|
Structure of chloramphenicol bound to the 50s ribosomal
subunit . SNAP
output
|
1njm
|
ribosome |
X-ray (3.6 Å) |
Bashan A, Agmon I, Zarivatch R, Schluenzen F, Harms
JM, Berisio R, Bartels H, Franceschi F, Auerbach T,
Hansen HA, Kossoy E, Kessler M, Yonath A |
(2003) "Structural
basis of the ribosomal machinery for Peptide bond
formation, translocation, and nascent chain
progression." Mol.Cell,
11, 91-102. doi: 10.1016/S1097-2765(03)00009-1.
|
The crystal structure of the 50s large ribosomal
subunit from deinococcus radiodurans complexed with a
trna acceptor stem mimic (asm) and the antibiotic
sparsomycin . SNAP
output
|
1njp
|
ribosome |
X-ray (3.5 Å) |
Bashan A, Agmon I, Zarivatch R, Schluenzen F, Harms
JM, Berisio R, Bartels H, Franceschi F, Auerbach T,
Hansen HA, Kossoy E, Kessler M, Yonath A |
(2003) "Structural
basis of the ribosomal machinery for Peptide bond
formation, translocation, and nascent chain
progression." Mol.Cell,
11, 91-102. doi: 10.1016/S1097-2765(03)00009-1.
|
The crystal structure of the 50s large ribosomal
subunit from deinococcus radiodurans complexed with a
trna acceptor stem mimic (asm) . SNAP output
|
1nyb
|
transcription-RNA |
NMR |
Cilley CD, Williamson JR |
(2003) "Structural
mimicry in the phage phi21 N peptide-boxB RNA
complex." RNA, 9,
663-676. doi: 10.1261/rna.2189203.
|
Solution structure of the bacteriophage phi21 n
peptide-boxb RNA complex . SNAP output
|
1o0b
|
ligase-RNA |
X-ray (2.7 Å) |
Bullock TL, Uter N, Nissan TA, Perona JJ |
(2003) "Amino
Acid Discrimination by a class I aminoacyl-tRNA
synthetase specified by negative determinants."
J.Mol.Biol., 328, 395-408.
doi: 10.1016/S0022-2836(03)00305-X.
|
Crystal structure of l-glutamine and ampcpp bound to
glutamine aminoacyl trna synthetase . SNAP output
|
1o0c
|
ligase-RNA |
X-ray (2.7 Å) |
Bullock TL, Uter N, Nissan TA, Perona JJ |
(2003) "Amino
Acid Discrimination by a class I aminoacyl-tRNA
synthetase specified by negative determinants."
J.Mol.Biol., 328, 395-408.
doi: 10.1016/S0022-2836(03)00305-X.
|
Crystal structure of l-glutamate and ampcpp bound to
glutamine aminoacyl trna synthetase . SNAP output
|
1ob2
|
hydrolase-nuclear protein |
X-ray (3.35 Å) |
Nielsen RC, Kristensen O, Kjeldgaard M, Thirup S,
Nissen P |
"Kirromycin Defines a Specific Domain Arrangement of
Elongation Factor EF-TU." |
E. coli elongation factor ef-tu complexed with the
antibiotic kirromycin, a gtp analog, and phe-trna .
SNAP output
|
1ob5
|
hydrolase |
X-ray (3.1 Å) |
Parmeggiani A, Krab IM, Watanabe T, Nielsen RC,
Dahlberg C, Nyborg J, Nissen P |
(2006) "Enacyloxin
Iia Pinpoints a Binding Pocket of Elongation Factor TU
for Development of Novel Antibiotics."
J.Biol.Chem., 281, 2893. doi:
10.1074/JBC.M505951200.
|
T. aquaticus elongation factor ef-tu complexed with the
antibiotic enacyloxin iia, a gtp analog, and phe-trna .
SNAP output
|
1oln
|
ribosome-antibiotic |
multiple methods: solution nmr, theoretical
model |
Lentzen G, Klinck R, Matassova N, Aboul-Ela F,
Murchie AIH |
(2003) "Structural
Basis for Contrasting Activities of Ribosome Binding
Thiazole Antibiotics." Chem.Biol.,
10, 769. doi: 10.1016/S1074-5521(03)00173-X.
|
Model for thiostrepton antibiotic binding to l11
substrate from 50s ribosomal RNA . SNAP output
|
1ooa
|
transcription-RNA |
X-ray (2.45 Å) |
Huang DB, Vu D, Cassiday LA, Zimmerman JM, Maher III
LJ, Ghosh G |
(2003) "Crystal
structure of NF-kappaB (p50)2 complexed to a
high-affinity RNA aptamer."
Proc.Natl.Acad.Sci.USA, 100,
9268-9273. doi: 10.1073/pnas.1632011100.
|
Crystal structure of nf-kb(p50)2 complexed to a
high-affinity RNA aptamer . SNAP output
|
1p6v
|
RNA binding protein-RNA |
X-ray (3.2 Å) |
Gutmann S, Haebel PW, Metzinger L, Sutter M, Felden
B, Ban N |
(2003) "Crystal
structure of the transfer-RNA domain of
transfer-messenger RNA in complex with SmpB."
Nature, 424, 699-703. doi:
10.1038/nature01831.
|
Crystal structure of the trna domain of
transfer-messenger RNA in complex with smpb . SNAP output
|
1pgl
|
virus-RNA |
X-ray (2.8 Å) |
Lin T, Cavarelli J, Johnson JE |
(2003) "Evidence
for assembly-dependent folding of protein and RNA in an
icosahedral virus." Virology,
314, 26-33. doi: 10.1016/S0042-6822(03)00457-4.
|
Bean pod mottle virus (bpmv), middle component .
SNAP output
|
1pvo
|
transcription-RNA |
X-ray (3.0 Å) |
Skordalakes E, Berger JM |
(2003) "Structure
of the Rho transcription terminator: mechanism of mRNA
recognition and helicase loading."
Cell(Cambridge,Mass.), 114,
135-146. doi: 10.1016/S0092-8674(03)00512-9.
|
X-ray crystal structure of rho transcription
termination factor in complex with ssrna substrate and
anppnp . SNAP output
|
1q2r
|
transferase-RNA |
X-ray (2.9 Å) |
Xie W, Liu X, Huang RH |
(2003) "Chemical
trapping and crystal structure of a catalytic tRNA
guanine transglycosylase covalent intermediate."
Nat.Struct.Biol., 10,
781-788. doi: 10.1038/nsb976.
|
Chemical trapping and crystal structure of a catalytic
trna guanine transglycosylase covalent intermediate .
SNAP output
|
1q2s
|
transferase-RNA |
X-ray (3.2 Å) |
Xie W, Liu X, Huang RH |
(2003) "Chemical
trapping and crystal structure of a catalytic tRNA
guanine transglycosylase covalent intermediate."
Nat.Struct.Biol., 10,
781-788. doi: 10.1038/nsb976.
|
Chemical trapping and crystal structure of a catalytic
trna guanine transglycosylase covalent intermediate .
SNAP output
|
1q7y
|
ribosome |
X-ray (3.2 Å) |
Hansen JL, Schmeing TM, Moore PB, Steitz TA |
(2002) "Structural
Insights Into Peptide Bond Formation."
Proc.Natl.Acad.Sci.USA, 99,
11670-11675. doi: 10.1073/pnas.172404099.
|
Crystal structure of ccdap-puromycin bound at the
peptidyl transferase center of the 50s ribosomal
subunit . SNAP
output
|
1q81
|
ribosome |
X-ray (2.95 Å) |
Hansen JL, Schmeing TM, Moore PB, Steitz TA |
(2002) "Structural
Insights into Peptide Bond Formation."
Proc.Natl.Acad.Sci.USA, 99,
11670-11675. doi: 10.1073/pnas.172404099.
|
Crystal structure of minihelix with 3' puromycin bound
to a-site of the 50s ribosomal subunit. . SNAP output
|
1q82
|
ribosome |
X-ray (2.98 Å) |
Hansen JL, Schmeing TM, Moore PB, Steitz TA |
(2002) "Structural
Insights Into Peptide Bond Formation."
Proc.Natl.Acad.Sci.USA, 99,
11670-11675. doi: 10.1073/pnas.172404099.
|
Crystal structure of cc-puromycin bound to the a-site
of the 50s ribosomal subunit . SNAP output
|
1q86
|
ribosome |
X-ray (3.0 Å) |
Hansen JL, Schmeing TM, Moore PB, Steitz TA |
(2002) "Structural
insights into peptide bond formation."
Proc.Natl.Acad.Sci.USA, 99,
11670-11675. doi: 10.1073/pnas.172404099.
|
Crystal structure of cca-phe-cap-biotin bound
simultaneously at half occupancy to both the a-site and
p-site of the the 50s ribosomal subunit. . SNAP output
|
1qa6
|
ribosome |
X-ray (2.8 Å) |
Conn GL, Draper DE, Lattman EE, Gittis AG |
(1999) "Crystal
structure of a conserved ribosomal protein-RNA
complex." Science, 284,
1171-1174. doi: 10.1126/science.284.5417.1171.
|
Crystal structure of a conserved ribosomal protein-RNA
complex . SNAP
output
|
1qf6
|
ligase-RNA |
X-ray (2.9 Å) |
Sankaranarayanan R, Dock-Bregeon AC, Romby P, Caillet
J, Springer M, Rees B, Ehresmann C, Ehresmann B, Moras
D |
(1999) "The
structure of threonyl-tRNA synthetase-tRNA(Thr) complex
enlightens its repressor activity and reveals an
essential zinc ion in the active site."
Cell(Cambridge,Mass.), 97,
371-381. doi: 10.1016/S0092-8674(00)80746-1.
|
Structure of e. coli threonyl-trna synthetase complexed
with its cognate trna . SNAP output
|
1qfq
|
transcription-RNA |
NMR |
Schaerpf M, Sticht H, Schweimer K, Boehm M, Hoffmann
S, Roesch P |
(2000) "Antitermination
in bacteriophage lambda. The structure of the N36
peptide-boxB RNA complex." Eur.J.Biochem.,
267, 2397-2408. doi: 10.1046/j.1432-1327.2000.01251.x.
|
Bacteriophage lambda n-protein-nutboxb-RNA complex .
SNAP output
|
1qrs
|
ligase-RNA |
X-ray (2.6 Å) |
Arnez JG, Steitz TA |
(1996) "Crystal
structures of three misacylating mutants of Escherichia
coli glutaminyl-tRNA synthetase complexed with
tRNA(Gln) and ATP." Biochemistry,
35, 14725-14733. doi: 10.1021/bi961532o.
|
Glutaminyl-trna synthetase mutant d235n complexed with
glutamine transfer RNA . SNAP output
|
1qrt
|
ligase-RNA |
X-ray (2.7 Å) |
Arnez JG, Steitz TA |
(1996) "Crystal
structures of three misacylating mutants of Escherichia
coli glutaminyl-tRNA synthetase complexed with
tRNA(Gln) and ATP." Biochemistry,
35, 14725-14733. doi: 10.1021/bi961532o.
|
Glutaminyl-trna synthetase mutant d235g complexed with
glutamine transfer RNA . SNAP output
|
1qru
|
ligase-RNA |
X-ray (3.0 Å) |
Arnez JG, Steitz TA |
(1996) "Crystal
structures of three misacylating mutants of Escherichia
coli glutaminyl-tRNA synthetase complexed with
tRNA(Gln) and ATP." Biochemistry,
35, 14725-14733. doi: 10.1021/bi961532o.
|
Glutaminyl-trna synthetase mutant i129t complexed with
glutamine transfer RNA . SNAP output
|
1qtq
|
ligase-RNA |
X-ray (2.25 Å) |
Rath VL, Silvian LF, Beijer B, Sproat BS, Steitz
TA |
(1998) "How
glutaminyl-tRNA synthetase selects glutamine."
Structure, 6, 439-449. doi:
10.1016/S0969-2126(98)00046-X.
|
Glutaminyl-trna synthetase complexed with trna and an
amino acid analog . SNAP
output
|
1qu2
|
ligase-RNA |
X-ray (2.2 Å) |
Silvian LF, Wang J, Steitz TA |
(1999) "Insights
into editing from an ile-tRNA synthetase structure with
tRNAile and mupirocin." Science,
285, 1074-1077. doi: 10.1126/science.285.5430.1074.
|
Insights into editing from an ile-trna synthetase
structure with trna(ile) and mupirocin . SNAP output
|
1qu3
|
ligase-RNA |
X-ray (2.9 Å) |
Silvian LF, Wang J, Steitz TA |
(1999) "Insights
into editing from an ile-tRNA synthetase structure with
tRNAile and mupirocin." Science,
285, 1074-1077. doi: 10.1126/science.285.5430.1074.
|
Insights into editing from an ile-trna synthetase
structure with trna(ile) and mupirocin . SNAP output
|
1qvf
|
ribosome |
X-ray (3.1 Å) |
Schmeing TM, Moore PB, Steitz TA |
(2003) "Structures
of deacylated tRNA mimics bound to the E site of the
large ribosomal subunit." RNA,
9, 1345-1352. doi: 10.1261/rna.5120503.
|
Structure of a deacylated trna minihelix bound to the e
site of the large ribosomal subunit of haloarcula
marismortui . SNAP
output
|
1qvg
|
ribosome |
X-ray (2.9 Å) |
Schmeing TM, Moore PB, Steitz TA |
(2003) "Structures
of deacylated tRNA mimics bound to the E site of the
large ribosomal subunit." RNA,
9, 1345-1352. doi: 10.1261/rna.5120503.
|
Structure of cca oligonucleotide bound to the trna
binding sites of the large ribosomal subunit of
haloarcula marismortui . SNAP output
|
1qzw
|
signaling protein-RNA |
X-ray (4.1 Å) |
Rosendal KR, Wild K, Montoya G, Sinning I |
(2003) "Crystal
structure of the complete core of archaeal signal
recognition particle and implications for interdomain
communication." Proc.Natl.Acad.Sci.USA,
100, 14701-14706. doi: 10.1073/pnas.2436132100.
|
Crystal structure of the complete core of archaeal srp
and implications for inter-domain communication .
SNAP output
|
1r3e
|
lyase-RNA |
X-ray (2.1 Å) |
Pan H, Agarwalla S, Moustakas DT, Finer-Moore J,
Stroud RM |
(2003) "Crystal
Structure of tRNA Pseudouridine Synthase TruB and Its
RNA Complex: RNA Recognition Through a Combination of
Rigid Docking and Induced Fit."
Proc.Natl.Acad.Sci.USA, 100,
12648-12653. doi: 10.1073/pnas.2135585100.
|
Crystal structure of trna pseudouridine synthase trub
and its RNA complex: RNA-protein recognition through a
combination of rigid docking and induced fit . SNAP output
|
1r9f
|
viral protein-RNA |
X-ray (1.85 Å) |
Ye K, Malinina L, Patel DJ |
(2003) "Recognition
of small interfering RNA by a viral suppressor of
RNA." Nature, 426,
874-878. doi: 10.1038/nature02213.
|
Crystal structure of p19 complexed with 19-bp small
interfering RNA . SNAP
output
|
1rc7
|
hydrolase-RNA |
X-ray (2.15 Å) |
Blaszczyk J, Gan J, Tropea JE, Court DL, Waugh DS, Ji
X |
(2004) "Noncatalytic
Assembly of Ribonuclease III with Double-Stranded
RNA." Structure, 12,
457-466. doi: 10.1016/j.str.2004.02.004.
|
Crystal structure of rnase iii mutant e110k from
aquifex aeolicus complexed with ds-RNA at 2.15 angstrom
resolution . SNAP
output
|
1rgo
|
RNA binding protein |
NMR |
Hudson BP, Martinez-Yamout MA, Dyson HJ, Wright
PE |
(2004) "Recognition
of the mRNA AU-rich element by the zinc finger domain
of TIS11d." NAT.STRUCT.MOL.BIOL.,
11, 257-264. doi: 10.1038/nsmb738.
|
Structural basis for recognition of the mrna class ii
au-rich element by the tandem zinc finger domain of
tis11d . SNAP output
|
1rkj
|
transcription-RNA |
NMR |
Johansson C, Finger LD, Trantirek L, Mueller TD, Kim
S, Laird-Offringa IA, Feigon J |
(2004) "Solution
structure of the complex formed by the two N-terminal
RNA-binding domains of nucleolin and a pre-rRNA
target." J.Mol.Biol.,
337, 799-816. doi: 10.1016/j.jmb.2004.01.056.
|
Solution structure of the complex formed by the two
n-terminal RNA-binding domains of nucleolin and a
pre-rrna target . SNAP
output
|
1rlg
|
structural protein-RNA |
X-ray (2.7 Å) |
Moore T, Zhang Y, Fenley MO, Li H |
(2004) "Molecular
Basis of Box C/D RNA-Protein Interactions; Cocrystal
Structure of Archaeal L7Ae and a Box C/D RNA."
STRUCTURE, 12, 807-818. doi:
10.1016/j.str.2004.02.033.
|
Molecular basis of box c-d RNA-protein interaction:
co-crystal structure of the archaeal srnp intiation
complex . SNAP
output
|
1rmv
|
virus-RNA |
fiber diffraction |
Wang H, Stubbs G |
(1993) "Molecular
dynamics in refinement against fiber diffraction
data." Acta Crystallogr.,Sect.A,
49, 504-513. doi: 10.1107/S0108767392011255.
|
Ribgrass mosaic virus, fiber diffraction . SNAP output
|
1rpu
|
RNA binding protein-RNA |
X-ray (2.5 Å) |
Vargason JM, Szittya G, Burgyan J, Hall TMT |
(2003) "Size
selective recognition of siRNA by an RNA silencing
suppressor." Cell(Cambridge,Mass.),
115, 799-811. doi: 10.1016/S0092-8674(03)00984-X.
|
Crystal structure of cirv p19 bound to sirna . SNAP output
|
1ry1
|
translation |
cryo-EM (12.0 Å) |
Halic M, Becker T, Pool MR, Spahn CM, Grassucci RA,
Frank J, Beckmann R |
(2004) "Structure
of the signal recognition particle interacting with the
elongation-arrested ribosome." Nature,
427, 808-814. doi: 10.1038/nature02342.
|
Structure of the signal recognition particle
interacting with the elongation-arrested ribosome .
SNAP output
|
1s03
|
transcription-RNA |
X-ray (2.7 Å) |
Merianos HJ, Wang J, Moore PB |
(2004) "The
structure of a ribosomal protein S8/spc operon mRNA
complex." RNA, 10,
954-964. doi: 10.1261/rna.7030704.
|
The structure of a ribosomal protein s8-spc operon mrna
complex . SNAP
output
|
1s72
|
ribosome |
X-ray (2.4 Å) |
Klein DJ, Moore PB, Steitz TA |
(2004) "The
Roles of Ribosomal Proteins in the Structure, Assembly
and Evolution of the Large Ribosomal Subunit."
J.Mol.Biol., 340, 141-177.
doi: 10.1016/j.jmb.2004.03.076.
|
Refined crystal structure of the haloarcula marismortui
large ribosomal subunit at 2.4 angstrom resolution .
SNAP output
|
1sds
|
protein-RNA complex |
X-ray (1.8 Å) |
Hamma T, Ferre-D'Amare A |
(2004) "Structure
of Protein L7Ae Bound to a K-Turn Derived from an
Archaeal Box H/ACA sRNA at 1.8 A Resolution."
STRUCTURE, 12, 893-903. doi:
10.1016/j.str.2004.03.015.
|
Structure of protein l7ae bound to a k-turn derived
from an archaeal box h-aca srna . SNAP output
|
1ser
|
ligase-RNA |
X-ray (2.9 Å) |
Biou V, Yaremchuk A, Tukalo M, Cusack S |
(1994) "The 2.9 A
crystal structure of T. thermophilus seryl-tRNA
synthetase complexed with tRNA(Ser)."
Science, 263, 1404-1410.
|
The 2.9 angstroms crystal structure of t. thermophilus
seryl-trna synthetase complexed with trna ser .
SNAP output
|
1si3
|
gene regulation-RNA |
X-ray (2.6 Å) |
Ma JB, Ye K, Patel DJ |
(2004) "Structural
basis for overhang-specific small interfering RNA
recognition by the PAZ domain." Nature,
429, 318-322. doi: 10.1038/nature02519.
|
Crystal structure of the paz domain of human eif2c1 in
complex with a 9-mer sirna-like duplex . SNAP output
|
1sj3
|
translation-RNA |
X-ray (2.2 Å) |
Ke A, Zhou K, Ding F, Cate JH, Doudna JA |
(2004) "A
Conformational Switch controls hepatitis delta virus
ribozyme catalysis." Nature,
429, 201-205. doi: 10.1038/nature02522.
|
Hepatitis delta virus gemonic ribozyme precursor, with
mg2+ bound . SNAP
output
|
1sj4
|
translation-RNA |
X-ray (2.7 Å) |
Ke A, Zhou K, Ding F, Cate JH, Doudna JA |
(2004) "A
Conformational Switch controls hepatitis delta virus
ribozyme catalysis." Nature,
429, 201-205. doi: 10.1038/nature02522.
|
Crystal structure of a c75u mutant hepatitis delta
virus ribozyme precursor, in cu2+ solution . SNAP output
|
1sjf
|
translation-RNA |
X-ray (2.75 Å) |
Ke A, Zhou K, Ding F, Cate JH, Doudna JA |
(2004) "A
conformational switch controls hepatitis delta virus
ribozyme catalysis." Nature,
429, 201-205. doi: 10.1038/nature02522.
|
Crystal structure of the hepatitis delta virus gemonic
ribozyme precursor, with c75u mutaion, in cobalt
hexammine solution . SNAP output
|
1sm1
|
ribosome-antibiotic |
X-ray (3.42 Å) |
Harms JM, Schlunzen F, Fucini P, Bartels H, Yonath
A |
(2004) "Alterations
at the Peptidyl Transferase Centre of the Ribosome
Induced by the Synergistic Action of the Streptogramins
Dalfopristin and Quinupristin." Bmc Biol.,
2, 4. doi: 10.1186/1741-7007-2-4.
|
Complex of the large ribosomal subunit from deinococcus
radiodurans with quinupristin and dalfopristin .
SNAP output
|
1sz1
|
transferase-RNA |
X-ray (6.21 Å) |
Xiong Y, Steitz TA |
(2004) "Mechanism
of transfer RNA maturation by CCA-adding enzyme without
using an oligonucleotide template."
Nature, 430, 640-645. doi:
10.1038/nature02711.
|
Mechanism of cca-adding enzymes specificity revealed by
crystal structures of ternary complexes . SNAP output
|
1t0k
|
ribosome |
X-ray (3.24 Å) |
Chao JA, Williamson JR |
(2004) "Joint
X-Ray and NMR Refinement of the Yeast L30e-mRNA
Complex." Structure, 12,
1165-1176. doi: 10.1016/j.str.2004.04.023.
|
Joint x-ray and NMR refinement of yeast l30e-mrna
complex . SNAP
output
|
1t2r
|
nucleic acid binding protein-RNA |
NMR |
Lingel A, Simon B, Izaurralde E, Sattler M |
(2004) "Nucleic
acid 3'-end recognition by the Argonaute2 PAZ
domain." Nat.Struct.Mol.Biol.,
11, 576-577. doi: 10.1038/nsmb777.
|
Structural basis for 3' end recognition of nucleic
acids by the drosophila argonaute 2 paz domain .
SNAP output
|
1t4l
|
RNA binding protein-RNA |
NMR |
Wu H, Henras A, Chanfreau G, Feigon J |
(2004) "Structural
basis for recognition of the AGNN tetraloop RNA fold by
the double-stranded RNA-binding domain of Rnt1p RNase
III." Proc.Natl.Acad.Sci.USA,
101, 8307-8312. doi: 10.1073/pnas.0402627101.
|
Solution structure of double-stranded RNA binding
domain of s. cerevisiae rnase iii (rnt1p) in complex
with the 5' terminal RNA hairpin of snr47 precursor .
SNAP output
|
1tfw
|
transferase-RNA |
X-ray (2.2 Å) |
Xiong Y, Steitz TA |
(2004) "Mechanism
of transfer RNA maturation by CCA-adding enzyme without
using an oligonucleotide template."
Nature, 430, 640-645. doi:
10.1038/nature02711.
|
How cca is added to the 3' end of immature trna without
the use of an oligonucleotide template . SNAP output
|
1tfy
|
transferase-RNA |
X-ray (3.2 Å) |
Xiong Y, Steitz TA |
(2004) "Mechanism
of transfer RNA maturation by CCA-adding enzyme without
using an oligonucleotide template."
Nature, 430, 640-645. doi:
10.1038/nature02711.
|
How cca is added to the 3' end of immature trna without
the use of an oligonucleotide template . SNAP output
|
1ttt
|
complex (elongation factor-trna) |
X-ray (2.7 Å) |
Nissen P, Kjeldgaard M, Thirup S, Polekhina G,
Reshetnikova L, Clark BF, Nyborg J |
(1995) "Crystal
structure of the ternary complex of Phe-tRNAPhe, EF-Tu,
and a GTP analog." Science,
270, 1464-1472.
|
Phe-trna, elongation factor ef-tu:gdpnp ternary complex
. SNAP output
|
1u0b
|
ligase-RNA |
X-ray (2.3 Å) |
Hauenstein S, Zhang CM, Hou YM, Perona JJ |
(2004) "Shape-selective
RNA recognition by cysteinyl-tRNA synthetase."
Nat.Struct.Mol.Biol., 11,
1134-1141. doi: 10.1038/nsmb849.
|
Crystal structure of cysteinyl-trna synthetase binary
complex with trnacys . SNAP output
|
1u63
|
transcription-RNA |
X-ray (3.4 Å) |
Nevskaya N, Tishchenko S, Gabdoulkhakov A, Nikonova
E, Nikonov O, Nikulin A, Platonova O, Garber M, Nikonov
S, Piendl W |
(2005) "Ribosomal
protein L1 recognizes the same specific structural
motif in its target sites on the autoregulatory mRNA
and 23S rRNA." Nucleic Acids Res.,
33, 478-485. doi: 10.1093/nar/gki194.
|
The structure of a ribosomal protein l1-mrna complex .
SNAP output
|
1u6b
|
structural protein-RNA |
X-ray (3.1 Å) |
Adams PL, Stahley MR, Kosek AB, Wang J, Strobel
SA |
(2004) "Crystal
Structure of a Self-Splicing Group I Intron with Both
Exons." Nature, 430,
45-50. doi: 10.1038/nature02642.
|
Crystal structure of a self-splicing group i intron
with both exons . SNAP
output
|
1u6p
|
viral protein-RNA |
NMR |
D'Souza V, Summers MF |
(2004) "Structural
basis for packaging the dimeric genome of Moloney
murine leukaemia virus." Nature,
431, 586-590. doi: 10.1038/nature02944.
|
NMR structure of the mlv encapsidation signal bound to
the nucleocapsid protein . SNAP output
|
1ull
|
viral protein-RNA |
NMR |
Ye X, Gorin A, Ellington AD, Patel DJ |
(1996) "Deep
penetration of an alpha-helix into a widened RNA major
groove in the HIV-1 rev peptide-RNA aptamer
complex." Nat.Struct.Biol.,
3, 1026-1033. doi: 10.1038/nsb1296-1026.
|
RNA aptamer complexed with hiv-1 rev peptide, NMR, 7
structures . SNAP
output
|
1un6
|
RNA-binding protein-RNA |
X-ray (3.1 Å) |
Lu D, Searles MA, Klug A |
(2003) "Crystal
Structure of a Zinc-Finger-RNA Complex Reveals Two
Modes of Molecular Recognition." Nature,
426, 96. doi: 10.1038/NATURE02088.
|
The crystal structure of a zinc finger - RNA complex
reveals two modes of molecular recognition . SNAP output
|
1uon
|
polymerase |
cryo-EM (7.6 Å) |
Zhang X, Walker SB, Chipman PR, Nibert ML, Baker
TS |
(2003) "Reovirus
Polymerase Lambda3 Localized by Cryo-Electron
Microscopy of Virions at a Resolution of 7.6 A."
Nat.Struct.Biol., 10, 1011.
doi: 10.1038/NSB1009.
|
Reovirus polymerase lambda-3 localized by electron
cryomicroscopy of virions at 7.6-a resolution .
SNAP output
|
1utd
|
RNA binding protein |
X-ray (2.1 Å) |
Hopcroft NH, Manfredo A, Wendt AL, Brzozowski AM,
Gollnick P, Antson AA |
(2004) "The
Interaction of RNA with Trap: The Role of Triplet
Repeats and Separating Spacer Nucleotides."
J.Mol.Biol., 338, 43. doi:
10.1016/J.JMB.2004.02.038.
|
The structure of the trp RNA-binding attenuation
protein (trap) bound to a 63-nucleotide RNA molecule
containing gaguuu repeats . SNAP output
|
1uvi
|
polymerase |
X-ray (2.15 Å) |
Salgado PS, Makeyev EV, Butcher SJ, Bamford DH,
Stuart DI, Grimes JM |
(2004) "The
structural basis for RNA specificity and Ca2+
inhibition of an RNA-dependent RNA polymerase."
Structure, 12, 307-316. doi:
10.1016/j.str.2004.01.012.
|
The structural basis for RNA specificity and ca2
inhibition of an RNA-dependent RNA polymerase phi6p2
with 6nt RNA . SNAP
output
|
1uvj
|
polymerase |
X-ray (1.9 Å) |
Salgado PS, Makeyev EV, Butcher SJ, Bamford DH,
Stuart DI, Grimes JM |
(2004) "The
structural basis for RNA specificity and Ca2+
inhibition of an RNA-dependent RNA polymerase."
Structure, 12, 307-316. doi:
10.1016/j.str.2004.01.012.
|
The structural basis for RNA specificity and ca2
inhibition of an RNA-dependent RNA polymerase phi6p2
with 7nt RNA . SNAP
output
|
1uvl
|
transferase |
X-ray (2.0 Å) |
Salgado PS, Makeyev EV, Butcher SJ, Bamford DH,
Stuart DI, Grimes JM |
(2004) "The
structural basis for RNA specificity and Ca2+
inhibition of an RNA-dependent RNA polymerase."
Structure, 12, 307-316. doi:
10.1016/j.str.2004.01.012.
|
The structural basis for RNA specificity and ca2
inhibition of an RNA-dependent RNA polymerase phi6p2
with 5nt RNA. conformation b . SNAP output
|
1uvm
|
transferase |
X-ray (2.0 Å) |
Salgado PS, Makeyev EV, Butcher SJ, Bamford DH,
Stuart DI, Grimes JM |
(2004) "The
structural basis for RNA specificity and Ca2+
inhibition of an RNA-dependent RNA polymerase."
Structure, 12, 307-316. doi:
10.1016/j.str.2004.01.012.
|
The structural basis for RNA specificity and ca2
inhibition of an RNA-dependent RNA polymerase phi6p2
with 5nt RNA conformation a . SNAP output
|
1uvn
|
polymerase |
X-ray (3.0 Å) |
Salgado PS, Makeyev EV, Butcher SJ, Bamford DH,
Stuart DI, Grimes JM |
(2004) "The
structural basis for RNA specificity and Ca2+
inhibition of an RNA-dependent RNA polymerase."
Structure, 12, 307-316. doi:
10.1016/j.str.2004.01.012.
|
The structural basis for RNA specificity and ca2
inhibition of an RNA-dependent RNA polymerase phi6p2
ca2+ inhibition complex . SNAP output
|
1vbx
|
translation-RNA |
X-ray (2.7 Å) |
Ke A, Zhou K, Ding F, Cate JHD, Doudna JA |
(2004) "A
Conformational Switch controls hepatitis delta virus
ribozyme catalysis." NATURE,
429, 201-205. doi: 10.1038/nature02522.
|
Crystal structure of the hepatitis delta virus gemonic
ribozyme precursor, with c75u mutaion, in edta solution
. SNAP output
|
1vby
|
translation-RNA |
X-ray (2.9 Å) |
Ke A, Zhou K, Ding F, Cate JHD, Doudna JA |
(2004) "A
Conformational Switch controls hepatitis delta virus
ribozyme catalysis." NATURE,
429, 201-205. doi: 10.1038/nature02522.
|
Crystal structure of the hepatitis delta virus gemonic
ribozyme precursor, with c75u mutaion, and mn2+ bound .
SNAP output
|
1vbz
|
translation-RNA |
X-ray (2.8 Å) |
Ke A, Zhou K, Ding F, Cate JHD, Doudna JA |
(2004) "A
Conformational Switch controls hepatitis delta virus
ribozyme catalysis." NATURE,
429, 201-205. doi: 10.1038/nature02522.
|
Crystal structure of the hepatitis delta virus gemonic
ribozyme precursor, with c75u mutaion, in ba2+ solution
. SNAP output
|
1vc0
|
translation-RNA |
X-ray (2.5 Å) |
Ke A, Zhou K, Ding F, Cate JHD, Doudna JA |
(2004) "A
Conformational Switch controls hepatitis delta virus
ribozyme catalysis." NATURE,
429, 201-205. doi: 10.1038/nature02522.
|
Crystal structure of the hepatitis delta virus gemonic
ribozyme precursor, with c75u mutaion, in imidazole and
sr2+ solution . SNAP
output
|
1vc5
|
translation-RNA |
X-ray (3.4 Å) |
Ke A, Zhou K, Ding F, Cate JHD, Doudna JA |
(2004) "A
Conformational Switch controls hepatitis delta virus
ribozyme catalysis." NATURE,
429, 201-205. doi: 10.1038/nature02522.
|
Crystal structure of the wild type hepatitis delta
virus gemonic ribozyme precursor, in edta solution .
SNAP output
|
1vc6
|
translation-RNA |
X-ray (2.8 Å) |
Ke A, Zhou K, Ding F, Cate JHD, Doudna JA |
(2004) "A
Conformational Switch controls hepatitis delta virus
ribozyme catalysis." NATURE,
429, 201-205. doi: 10.1038/nature02522.
|
Crystal structure of the hepatitis delta virus gemonic
ribozyme product with c75u mutaion, cleaved in
imidazole and mg2+ solutions . SNAP output
|
1vfg
|
transferase-RNA |
X-ray (2.8 Å) |
Tomita K, Fukai S, Ishitani R, Ueda T, Takeuchi N,
Vassylyev DG, Nureki O |
(2004) "Structural
basis for template-independent RNA polymerization."
Nature, 430, 700-704. doi:
10.1038/nature02712.
|
Crystal structure of trna nucleotidyltransferase
complexed with a primer trna and an incoming atp analog
. SNAP output
|
1vq4
|
ribosome |
X-ray (2.7 Å) |
Schmeing TM, Huang KS, Kitchen DE, Strobel SA, Steitz
TA |
(2005) "Structural
Insights into the Roles of Water and the 2' Hydroxyl of
the P Site tRNA in the Peptidyl Transferase
Reaction." Mol.Cell, 20,
437-448. doi: 10.1016/j.molcel.2005.09.006.
|
The structure of the transition state analogue "daa"
bound to the large ribosomal subunit of haloarcula
marismortui . SNAP
output
|
1vq6
|
ribosome |
X-ray (2.7 Å) |
Schmeing TM, Huang KS, Strobel SA, Steitz TA |
(2005) "An
induced-fit mechanism to promote peptide bond formation
and exclude hydrolysis of peptidyl-tRNA."
Nature, 438, 520-524. doi:
10.1038/nature04152.
|
The structure of c-hpmn and cca-phe-cap-bio bound to
the large ribosomal subunit of haloarcula marismortui .
SNAP output
|
1vq7
|
ribosome |
X-ray (2.5 Å) |
Schmeing TM, Huang KS, Strobel SA, Steitz TA |
(2005) "An
induced-fit mechanism to promote peptide bond formation
and exclude hydrolysis of peptidyl-tRNA."
Nature, 438, 520-524. doi:
10.1038/nature04152.
|
The structure of the transition state analogue "dca"
bound to the large ribosomal subunit of haloarcula
marismortui . SNAP
output
|
1vq8
|
ribosome |
X-ray (2.2 Å) |
Schmeing TM, Huang KS, Kitchen DE, Strobel SA, Steitz
TA |
(2005) "Structural
Insights into the Roles of Water and the 2' Hydroxyl of
the P Site tRNA in the Peptidyl Transferase
Reaction." Mol.Cell, 20,
437-448. doi: 10.1016/j.molcel.2005.09.006.
|
The structure of ccda-phe-cap-bio and the antibiotic
sparsomycin bound to the large ribosomal subunit of
haloarcula marismortui . SNAP output
|
1vq9
|
ribosome |
X-ray (2.4 Å) |
Schmeing TM, Huang KS, Kitchen DE, Strobel SA, Steitz
TA |
(2005) "Structural
Insights into the Roles of Water and the 2' Hydroxyl of
the P Site tRNA in the Peptidyl Transferase
Reaction." Mol.Cell, 20,
437-448. doi: 10.1016/j.molcel.2005.09.006.
|
The structure of cca-phe-cap-bio and the antibiotic
sparsomycin bound to the large ribosomal subunit of
haloarcula marismortui . SNAP output
|
1vqk
|
ribosome |
X-ray (2.3 Å) |
Schmeing TM, Huang KS, Kitchen DE, Strobel SA, Steitz
TA |
(2005) "Structural
Insights into the Roles of Water and the 2' Hydroxyl of
the P Site tRNA in the Peptidyl Transferase
Reaction." Mol.Cell, 20,
437-448. doi: 10.1016/j.molcel.2005.09.006.
|
The structure of ccda-phe-cap-bio bound to the a site
of the ribosomal subunit of haloarcula marismortui .
SNAP output
|
1vql
|
ribosome |
X-ray (2.3 Å) |
Schmeing TM, Huang KS, Kitchen DE, Strobel SA, Steitz
TA |
(2005) "Structural
Insights into the Roles of Water and the 2' Hydroxyl of
the P Site tRNA in the Peptidyl Transferase
Reaction." Mol.Cell, 20,
437-448. doi: 10.1016/j.molcel.2005.09.006.
|
The structure of the transition state analogue "dcsn"
bound to the large ribosomal subunit of haloarcula
marismortui . SNAP
output
|
1vqm
|
ribosome |
X-ray (2.3 Å) |
Schmeing TM, Huang KS, Kitchen DE, Strobel SA, Steitz
TA |
(2005) "Structural
Insights into the Roles of Water and the 2' Hydroxyl of
the P Site tRNA in the Peptidyl Transferase
Reaction." Mol.Cell, 20,
437-448. doi: 10.1016/j.molcel.2005.09.006.
|
The structure of the transition state analogue "dan"
bound to the large ribosomal subunit of haloarcula
marismortui . SNAP
output
|
1vqn
|
ribosome |
X-ray (2.4 Å) |
Schmeing TM, Huang KS, Strobel SA, Steitz TA |
(2005) "An
induced-fit mechanism to promote peptide bond formation
and exclude hydrolysis of peptidyl-tRNA."
Nature, 438, 520-524. doi:
10.1038/nature04152.
|
The structure of cc-hpmn and cca-phe-cap-bio bound to
the large ribosomal subunit of haloarcula marismortui .
SNAP output
|
1vqo
|
ribosome |
X-ray (2.2 Å) |
Schmeing TM, Huang KS, Kitchen DE, Strobel SA, Steitz
TA |
(2005) "Structural
Insights into the Roles of Water and the 2' Hydroxyl of
the P Site tRNA in the Peptidyl Transferase
Reaction." Mol.Cell, 20,
437-448. doi: 10.1016/j.molcel.2005.09.006.
|
The structure of ccpmn bound to the large ribosomal
subunit haloarcula marismortui . SNAP output
|
1vtm
|
virus-RNA |
fiber diffraction |
Pattanayek R, Stubbs G |
(1992) "Structure
of the U2 strain of tobacco mosaic virus refined at 3.5
A resolution using X-ray fiber diffraction."
J.Mol.Biol., 228, 516-528.
doi: 10.1016/0022-2836(92)90839-C.
|
Structure of the u2 strain of tobacco mosaic virus
refined at 3.5 angstroms resolution using x-ray fiber
diffraction . SNAP
output
|
1vvj
|
ribosome |
X-ray (3.44 Å) |
Maehigashi T, Dunkle JA, Miles SJ, Dunham CM |
(2014) "Structural
insights into +1 frameshifting promoted by expanded or
modification-deficient anticodon stem loops."
Proc.Natl.Acad.Sci.USA, 111,
12740-12745. doi: 10.1073/pnas.1409436111.
|
Crystal structure of frameshift suppressor trna sufa6
bound to codon ccc-g on the ribosome . SNAP output
|
1vy4
|
ribosome |
X-ray (2.6 Å) |
Polikanov YS, Steitz TA, Innis CA |
(2014) "A proton
wire to couple aminoacyl-tRNA accommodation and
peptide-bond formation on the ribosome."
Nat.Struct.Mol.Biol., 21,
787-793. doi: 10.1038/nsmb.2871.
|
Crystal structure of the thermus thermophilus 70s
ribosome in the pre-attack state of peptide bond
formation containing acylated trna-substrates in the a
and p sites. . SNAP
output
|
1vy5
|
ribosome |
X-ray (2.55 Å) |
Polikanov YS, Steitz TA, Innis CA |
(2014) "A proton
wire to couple aminoacyl-tRNA accommodation and
peptide-bond formation on the ribosome."
Nat.Struct.Mol.Biol., 21,
787-793. doi: 10.1038/nsmb.2871.
|
Crystal structure of the thermus thermophilus 70s
ribosome in the post-catalysis state of peptide bond
formation containing dipeptydil-trna in the a site and
deacylated trna in the p site. . SNAP output
|
1vy6
|
ribosome |
X-ray (2.9 Å) |
Polikanov YS, Steitz TA, Innis CA |
(2014) "A proton
wire to couple aminoacyl-tRNA accommodation and
peptide-bond formation on the ribosome."
Nat.Struct.Mol.Biol., 21,
787-793. doi: 10.1038/nsmb.2871.
|
Crystal structure of the thermus thermophilus 70s
ribosome in the pre-attack state of peptide bond
formation containing short substrate-mimic
cytidine-puromycin in the a site and acylated trna in
the p site. . SNAP
output
|
1vy7
|
ribosome |
X-ray (2.8 Å) |
Polikanov YS, Steitz TA, Innis CA |
(2014) "A proton
wire to couple aminoacyl-tRNA accommodation and
peptide-bond formation on the ribosome."
Nat.Struct.Mol.Biol., 21,
787-793. doi: 10.1038/nsmb.2871.
|
Crystal structure of the thermus thermophilus 70s
ribosome in the pre-attack state of peptide bond
formation containing short substrate-mimic
cytidine-cytidine-puromycin in the a site and acylated
trna in the p site. . SNAP output
|
1w2b
|
ribosome |
X-ray (3.5 Å) |
Ferbitz L, Maier T, Patzelt H, Bukau B, Deuerling E,
Ban N |
(2004) "Trigger
Factor in Complex with the Ribosome Forms a Molecular
Cradle for Nascent Proteins." Nature,
431, 590. doi: 10.1038/NATURE02899.
|
Trigger factor ribosome binding domain in complex with
50s . SNAP output
|
1wmq
|
transcription-RNA |
X-ray (1.6 Å) |
Kumarevel T, Mizuno H, Kumar PK |
(2005) "Structural
basis of HutP-mediated anti-termination and roles of
the Mg2+ ion and L-histidine ligand."
Nature, 434, 183-191. doi:
10.1038/nature03355.
|
Structure of the hutp antitermination complex bound to
a single stranded region of hut mrna . SNAP output
|
1wne
|
transferase-RNA |
X-ray (3.0 Å) |
Ferrer-Orta C, Arias A, Perez-Luque R, Escarmis C,
Domingo E, Verdaguer N |
(2004) "Structure
of Foot-and-Mouth Disease Virus RNA-dependent RNA
Polymerase and Its Complex with a Template-Primer
RNA." J.Biol.Chem., 279,
47212-47221. doi: 10.1074/jbc.M405465200.
|
Foot and mouth disease virus RNA-dependent RNA
polymerase in complex with a template-primer RNA .
SNAP output
|
1wpu
|
transcription-RNA |
X-ray (1.48 Å) |
Kumarevel TS, Mizuno H, Kumar PKR |
"Structural basis for the HutP antitermination
Complex:Role of divalent metal ions in allosteric
activation." |
Crystal structure of the hutp antitermination complex
bound to a single stranded region of hut mrna .
SNAP output
|
1wrq
|
transcription-RNA |
X-ray (2.2 Å) |
Kumarevel T, Mizuno H, Kumar PKR |
"Crystal Structure of the HutP-antitermination
complex." |
Crystal structure of hutp-antitermination complex .
SNAP output
|
1wsu
|
translation-RNA |
X-ray (2.3 Å) |
Yoshizawa S, Rasubala L, Ose T, Kohda D, Fourmy D,
Maenaka K |
(2005) "Structural
basis for mRNA recognition by elongation factor
SelB." Nat.Struct.Mol.Biol.,
12, 198-203. doi: 10.1038/nsmb890.
|
C-terminal domain of elongation factor selb complexed
with secis RNA . SNAP
output
|
1wwd
|
viral protein-RNA |
NMR |
Dey A, York D, Smalls-Mantey A, Summers MF |
(2005) "Composition
and sequence-dependent binding of RNA to the
nucleocapsid protein of Moloney murine leukemia
virus(,)." Biochemistry,
44, 3735-3744. doi: 10.1021/bi047639q.
|
NMR structure determined for mlv nc complex with RNA
sequence aacagu . SNAP
output
|
1wwe
|
viral protein-RNA |
NMR |
Dey A, York D, Smalls-Mantey A, Summers MF |
(2005) "Composition
and sequence-dependent binding of RNA to the
nucleocapsid protein of Moloney murine leukemia
virus(,)." Biochemistry,
44, 3735-3744. doi: 10.1021/bi047639q.
|
NMR structure determined for mlv nc complex with RNA
sequence uuuugcu . SNAP
output
|
1wwf
|
viral protein-RNA |
NMR |
Dey A, York D, Smalls-Mantey A, Summers MF |
(2005) "Composition
and sequence-dependent binding of RNA to the
nucleocapsid protein of Moloney murine leukemia
virus(,)." Biochemistry,
44, 3735-3744. doi: 10.1021/bi047639q.
|
NMR structure determined for mlv nc complex with RNA
sequence ccuccgu . SNAP
output
|
1wwg
|
viral protein-RNA |
NMR |
Dey A, York D, Smalls-Mantey A, Summers MF |
(2005) "Composition
and sequence-dependent binding of RNA to the
nucleocapsid protein of Moloney murine leukemia
virus(,)." Biochemistry,
44, 3735-3744. doi: 10.1021/bi047639q.
|
NMR structure determined for mlv nc complex with RNA
sequence uaucug . SNAP
output
|
1wz2
|
ligase-RNA |
X-ray (3.21 Å) |
Fukunaga R, Yokoyama S |
"The crystal structure of Leucyl-tRNA synthetase and
tRNA(leucine) complex." |
The crystal structure of leucyl-trna synthetase and
trna(leucine) complex . SNAP output
|
1xmo
|
ribosome |
X-ray (3.25 Å) |
Murphy FV, Ramakrishnan V, Malkiewicz A, Agris
PF |
(2004) "The role
of modifications in codon discrimination by
tRNA(Lys)(UUU)." Nat.Struct.Mol.Biol.,
11, 1186-1191. doi: 10.1038/nsmb861.
|
Crystal structure of mnm5u34t6a37-trnalysuuu complexed
with aag-mrna in the decoding center . SNAP output
|
1xmq
|
ribosome |
X-ray (3.0 Å) |
Murphy FV, Ramakrishnan V, Malkiewicz A, Agris
PF |
(2004) "The role
of modifications in codon discrimination by
tRNA(Lys)(UUU)." Nat.Struct.Mol.Biol.,
11, 1186-1191. doi: 10.1038/nsmb861.
|
Crystal structure of t6a37-asllysuuu aaa-mrna bound to
the decoding center . SNAP output
|
1xnq
|
ribosome |
X-ray (3.05 Å) |
Murphy FV, Ramakrishnan V |
(2004) "Structure
of a purine-purine wobble base pair in the decoding
center of the ribosome."
Nat.Struct.Mol.Biol., 11,
1251-1252. doi: 10.1038/nsmb866.
|
Structure of an inosine-adenine wobble base pair
complex in the context of the decoding center .
SNAP output
|
1xnr
|
ribosome |
X-ray (3.1 Å) |
Murphy FV, Ramakrishnan V |
(2004) "Structure
of a purine-purine wobble base pair in the decoding
center of the ribosome."
Nat.Struct.Mol.Biol., 11,
1251-1252. doi: 10.1038/nsmb866.
|
Crystal structure of an inosine-cytosine wobble base
pair in the context of the decoding center . SNAP output
|
1xok
|
viral protein-RNA |
X-ray (3.0 Å) |
Guogas LM, Filman DJ, Hogle JM, Gehrke L |
(2004) "Cofolding
organizes alfalfa mosaic virus RNA and coat protein for
replication." Science,
306, 2108-2111. doi: 10.1126/science.1103399.
|
Crystal structure of alfalfa mosaic virus RNA 3'utr in
complex with coat protein n terminal peptide . SNAP output
|
1xpo
|
transcription-RNA |
X-ray (3.15 Å) |
Skordalakes E, Brogan AP, Park BS, Kohn H, Berger
JM |
(2005) "Structural
mechanism of inhibition of the rho transcription
termination factor by the antibiotic bicyclomycin."
Structure, 13, 99-109. doi:
10.1016/j.str.2004.10.013.
|
Structural mechanism of inhibition of the rho
transcription termination factor by the antibiotic
bicyclomycin . SNAP
output
|
1xpr
|
transcription-RNA |
X-ray (3.15 Å) |
Skordalakes E, Brogan AP, Park BS, Kohn H, Berger
JM |
(2005) "Structural
mechanism of inhibition of the rho transcription
termination factor by the antibiotic bicyclomycin."
Structure, 13, 99-109. doi:
10.1016/j.str.2004.10.013.
|
Structural mechanism of inhibition of the rho
transcription termination factor by the antibiotic
5a-formylbicyclomycin (fb) . SNAP output
|
1xpu
|
transcription-RNA |
X-ray (3.05 Å) |
Skordalakes E, Brogan AP, Park BS, Kohn H, Berger
JM |
(2005) "Structural
mechanism of inhibition of the rho transcription
termination factor by the antibiotic bicyclomycin."
Structure, 13, 99-109. doi:
10.1016/j.str.2004.10.013.
|
Structural mechanism of inhibition of the rho
transcription termination factor by the antibiotic
5a-(3-formylphenylsulfanyl)-dihydrobicyclomycin (fpdb)
. SNAP output
|
1y39
|
structural protein-RNA |
X-ray (2.8 Å) |
Dunstan MS, Guhathakurta D, Draper DE, Conn GL |
(2005) "Coevolution
of Protein and RNA Structures within a Highly Conserved
Ribosomal Domain." Chem.Biol.,
12, 201-206. doi: 10.1016/j.chembiol.2004.11.019.
|
Co-evolution of protein and RNA structures within a
highly conserved ribosomal domain . SNAP output
|
1y69
|
ribosome |
X-ray (3.33 Å) |
Wilson DN, Schluenzen F, Harms JM, Yoshida T, Ohkubo
T, Albrecht R, Buerger J, Kobayashi Y, Fucini P |
(2005) "X-ray
crystallography on ribosome recycling: mechanism of
binding and action of RRF on the 50S ribosomal
subunit." EMBO J., 24,
251-260. doi: 10.1038/sj.emboj.7600525.
|
Rrf domain i in complex with the 50s ribosomal subunit
from deinococcus radiodurans . SNAP output
|
1yhq
|
ribosome |
X-ray (2.4 Å) |
Tu D, Blaha G, Moore PB, Steitz TA |
(2005) "Structures
of MLSBK antibiotics bound to mutated large ribosomal
subunits provide a structural explanation for
resistance." Cell(Cambridge,Mass.),
121, 257-270. doi: 10.1016/j.cell.2005.02.005.
|
Crystal structure of azithromycin bound to the g2099a
mutant 50s ribosomal subunit of haloarcula marismortui
. SNAP output
|
1yi2
|
ribosome |
X-ray (2.65 Å) |
Tu D, Blaha G, Moore PB, Steitz TA |
(2005) "Structures
of MLSBK antibiotics bound to mutated large ribosomal
subunits provide a structural explanation for
resistance." Cell(Cambridge,Mass.),
121, 257-270. doi: 10.1016/j.cell.2005.02.005.
|
Crystal structure of erythromycin bound to the g2099a
mutant 50s ribosomal subunit of haloarcula marismortui
. SNAP output
|
1yij
|
ribosome |
X-ray (2.6 Å) |
Tu D, Blaha G, Moore PB, Steitz TA |
(2005) "Structures
of MLSBK antibiotics bound to mutated large ribosomal
subunits provide a structural explanation for
resistance." Cell(Cambridge,Mass.),
121, 257-270. doi: 10.1016/j.cell.2005.02.005.
|
Crystal structure of telithromycin bound to the g2099a
mutant 50s ribosomal subunit of haloarcula marismortui
. SNAP output
|
1yit
|
ribosome-antibiotic |
X-ray (2.8 Å) |
TU D, Blaha G, Moore PB, Steitz TA |
(2005) "Structures
of Mlsbk Antibiotics Bound to Mutated Large Ribosomal
Subunits Provide a Structural Explanation for
Resistance." Cell(Cambridge,Mass.),
121, 257. doi: 10.1016/J.CELL.2005.02.005.
|
Crystal structure of virginiamycin m and s bound to the
50s ribosomal subunit of haloarcula marismortui .
SNAP output
|
1yj9
|
ribosome |
X-ray (2.8 Å) |
Tu D, Blaha G, Moore PB, Steitz TA |
(2005) "Structures
of MLSBK antibiotics bound to mutated large ribosomal
subunits provide a structural explanation for
resistance." Cell(Cambridge,Mass.),
121, 257-270. doi: 10.1016/j.cell.2005.02.005.
|
Crystal structure of the mutant 50s ribosomal subunit
of haloarcula marismortui containing a three residue
deletion in l22 . SNAP
output
|
1yjn
|
ribosome |
X-ray (3.0 Å) |
Tu D, Blaha G, Moore PB, Steitz TA |
(2005) "Structures
of MLSBK antibiotics bound to mutated large ribosomal
subunits provide a structural explanation for
resistance." Cell(Cambridge,Mass.),
121, 257-270. doi: 10.1016/j.cell.2005.02.005.
|
Crystal structure of clindamycin bound to the g2099a
mutant 50s ribosomal subunit of haloarcula marismortui
. SNAP output
|
1yjw
|
ribosome-antibiotic |
X-ray (2.9 Å) |
Tu D, Blaha G, Moore PB, Steitz TA |
(2005) "Structures
of Mlsbk Antibiotics Bound to Mutated Large Ribosomal
Subunits Provide a Structural Explanation for
Resistance." Cell(Cambridge,Mass.),
121, 257. doi: 10.1016/J.CELL.2005.02.005.
|
Crystal structure of quinupristin bound to the g2099a
mutant 50s ribosomal subunit of haloarcula marismortui
. SNAP output
|
1ysh
|
structural protein-RNA |
cryo-EM (9.5 Å) |
Halic M, Becker T, Frank J, Spahn CM, Beckmann R |
(2005) "Localization
and dynamic behavior of ribosomal protein L30e."
Nat.Struct.Mol.Biol., 12,
467-468. doi: 10.1038/nsmb933.
|
Localization and dynamic behavior of ribosomal protein
l30e . SNAP output
|
1ytu
|
RNA binding protein-RNA |
X-ray (2.5 Å) |
Ma JB, Yuan YR, Meister G, Pei Y, Tuschl T, Patel
DJ |
(2005) "Structural
basis for 5'-end-specific recognition of guide RNA by
the A. fulgidus Piwi protein." Nature,
434, 666-670. doi: 10.1038/nature03514.
|
Structural basis for 5'-end-specific recognition of the
guide RNA strand by the a. fulgidus piwi protein .
SNAP output
|
1yty
|
transcription-RNA |
X-ray (2.29 Å) |
Teplova M, Yuan YR, Phan AT, Malinina L, Ilin S,
Teplov A, Patel DJ |
(2006) "Structural
Basis for Recognition and Sequestration of UUU(OH) 3'
Temini of Nascent RNA Polymerase III Transcripts by La,
a Rheumatic Disease Autoantigen."
Mol.Cell, 21, 75-85. doi:
10.1016/j.molcel.2005.10.027.
|
Structural basis for recognition of uuuoh 3'-terminii
of nascent RNA pol iii transcripts by la autoantigen .
SNAP output
|
1yvp
|
RNA binding protein-RNA |
X-ray (2.2 Å) |
Stein AJ, Fuchs G, Fu C, Wolin SL, Reinisch KM |
(2005) "Structural
Insights into RNA Quality Control: The Ro Autoantigen
Binds Misfolded RNAs via Its Central Cavity."
Cell(Cambridge,Mass.), 121,
529-539. doi: 10.1016/j.cell.2005.03.009.
|
Ro autoantigen complexed with rnas . SNAP output
|
1yyk
|
hydrolase-RNA |
X-ray (2.5 Å) |
Gan J, Tropea JE, Austin BP, Court DL, Waugh DS, Ji
X |
(2005) "Intermediate
states of ribonuclease III in complex with
double-stranded RNA." Structure,
13, 1435-1442. doi: 10.1016/j.str.2005.06.014.
|
Crystal structure of rnase iii from aquifex aeolicus
complexed with double-stranded RNA at 2.5-angstrom
resolution . SNAP
output
|
1yyo
|
hydrolase-RNA |
X-ray (2.9 Å) |
Gan J, Tropea JE, Austin BP, Court DL, Waugh DS, Ji
X |
(2005) "Intermediate
states of ribonuclease III in complex with
double-stranded RNA." Structure,
13, 1435-1442. doi: 10.1016/j.str.2005.06.014.
|
Crystal structure of rnase iii mutant e110k from
aquifex aeolicus complexed with double-stranded RNA at
2.9-angstrom resolution . SNAP output
|
1yyw
|
hydrolase-RNA |
X-ray (2.8 Å) |
Gan J, Tropea JE, Austin BP, Court DL, Waugh DS, Ji
X |
(2005) "Intermediate
states of ribonuclease III in complex with
double-stranded RNA." Structure,
13, 1435-1442. doi: 10.1016/j.str.2005.06.014.
|
Crystal structure of rnase iii from aquifex aeolicus
complexed with double stranded RNA at 2.8-angstrom
resolution . SNAP
output
|
1yz9
|
hydrolase-RNA |
X-ray (2.1 Å) |
Gan J, Tropea JE, Austin BP, Court DL, Waugh DS, Ji
X |
(2005) "Intermediate
states of ribonuclease III in complex with
double-stranded RNA." Structure,
13, 1435-1442. doi: 10.1016/j.str.2005.06.014.
|
Crystal structure of rnase iii mutant e110q from
aquifex aeolicus complexed with double stranded RNA at
2.1-angstrom resolution . SNAP output
|
1zbh
|
hydrolase-RNA |
X-ray (3.0 Å) |
Cheng Y, Patel DJ |
"Structural basis for 3'-end specific recognition of
histone mRNA stem-loop by 3'-exonuclease, a human
nuclease that also targets siRNA." |
3'-end specific recognition of histone mrna stem-loop
by 3'-exonuclease . SNAP
output
|
1zbn
|
RNA binding protein-RNA |
NMR |
Calabro V, Daugherty MD, Frankel AD |
(2005) "A single
intermolecular contact mediates intramolecular
stabilization of both RNA and protein."
Proc.Natl.Acad.Sci.Usa, 102,
6849-6854. doi: 10.1073/pnas.0409282102.
|
Solution structure of biv tar hairpin complexed to jdv
tat arginine-rich motif . SNAP output
|
1zdh
|
virus-RNA |
X-ray (2.7 Å) |
Valegard K, Murray JB, Stonehouse NJ, van den Worm S,
Stockley PG, Liljas L |
(1997) "The
three-dimensional structures of two complexes between
recombinant MS2 capsids and RNA operator fragments
reveal sequence-specific protein-RNA interactions."
J.Mol.Biol., 270, 724-738.
doi: 10.1006/jmbi.1997.1144.
|
Ms2 coat protein-RNA complex . SNAP output
|
1zdi
|
virus-RNA |
X-ray (2.7 Å) |
Valegard K, Murray JB, Stonehouse NJ, van den Worm S,
Stockley PG, Liljas L |
(1997) "The
three-dimensional structures of two complexes between
recombinant MS2 capsids and RNA operator fragments
reveal sequence-specific protein-RNA interactions."
J.Mol.Biol., 270, 724-738.
doi: 10.1006/jmbi.1997.1144.
|
RNA bacteriophage ms2 coat protein-RNA complex .
SNAP output
|
1zdj
|
virus-RNA |
X-ray (2.9 Å) |
Grahn E, Stonehouse NJ, Murray JB, van den Worm S,
Valegard K, Fridborg K, Stockley PG, Liljas L |
(1999) "Crystallographic
studies of RNA hairpins in complexes with recombinant
MS2 capsids: implications for binding
requirements." RNA, 5,
131-138. doi: 10.1017/S1355838299981645.
|
Structure of bacteriophage coat protein-loop RNA
complex . SNAP
output
|
1zdk
|
virus-RNA |
X-ray (2.86 Å) |
Grahn E, Stonehouse NJ, Murray JB, van den Worm S,
Valegard K, Fridborg K, Stockley PG, Liljas L |
(1999) "Crystallographic
studies of RNA hairpins in complexes with recombinant
MS2 capsids: implications for binding
requirements." RNA, 5,
131-138. doi: 10.1017/S1355838299981645.
|
Structure of bacteriophage coat protein-loop RNA
complex . SNAP
output
|
1ze2
|
lyase-RNA |
X-ray (3.0 Å) |
Phannachet K, Huang RH |
(2004) "Conformational
change of pseudouridine 55 synthase upon its
association with RNA substrate." Nucleic Acids
Res., 32, 1422-1429. doi:
10.1093/nar/gkh287.
|
Conformational change of pseudouridine 55 synthase upon
its association with RNA substrate . SNAP output
|
1zh5
|
transcription-RNA |
X-ray (1.85 Å) |
Teplova M, Yuan YR, Phan AT, Malinina L, Ilin S,
Teplov A, Patel DJ |
(2006) "Structural
Basis for Recognition and Sequestration of UUU(OH) 3'
Temini of Nascent RNA Polymerase III Transcripts by La,
a Rheumatic Disease Autoantigen."
Mol.Cell, 21, 75-85. doi:
10.1016/j.molcel.2005.10.027.
|
Structural basis for recognition of uuuoh 3'-terminii
of nascent RNA pol iii transcripts by la autoantigen .
SNAP output
|
1zho
|
structural protein-RNA |
X-ray (2.6 Å) |
Nevskaya N, Tishchenko S, Volchkov S, Kljashtorny V,
Nikonova E, Nikonov O, Nikulin A, Kohrer C, Piendl W,
Zimmermann R, Stockley P, Garber M, Nikonov S |
(2006) "New
insights into the interaction of ribosomal protein L1
with RNA." J.Mol.Biol.,
355, 747-759. doi: 10.1016/j.jmb.2005.10.084.
|
The structure of a ribosomal protein l1 in complex with
mrna . SNAP output
|
1zjw
|
ligase-RNA |
X-ray (2.5 Å) |
Gruic-Sovulj I, Uter N, Bullock T, Perona JJ |
(2005) "tRNA-dependent
Aminoacyl-adenylate Hydrolysis by a Nonediting Class I
Aminoacyl-tRNA Synthetase." J.Biol.Chem.,
280, 23978-23986. doi: 10.1074/jbc.M414260200.
|
Glutaminyl-trna synthetase complexed to glutamine and
2'deoxy a76 glutamine trna . SNAP output
|
1zl3
|
lyase-RNA |
X-ray (2.8 Å) |
Hoang C, Hamilton CS, Mueller EG, Ferre-D'Amare
AR |
(2005) "Precursor
complex structure of pseudouridine synthase TruB
suggests coupling of active site perturbations to an
RNA-sequestering peripheral protein domain."
Protein Sci., 14, 2201-2206.
doi: 10.1110/ps.051493605.
|
Coupling of active site motions and RNA binding .
SNAP output
|
1zo1
|
translation-RNA |
cryo-EM (13.8 Å) |
Allen GS, Zavialov A, Gursky R, Ehrenberg M, Frank
J |
(2005) "The
Cryo-EM Structure of a Translation Initiation Complex
from Escherichia coli."
Cell(Cambridge,Mass.), 121,
703-712. doi: 10.1016/j.cell.2005.03.023.
|
If2, if1, and trna fitted to cryo-EM data of e. coli
70s initiation complex . SNAP output
|
1zse
|
RNA-virus-viral protein |
X-ray (3.0 Å) |
Horn WT, Tars K, Grahn E, Helgstrand C, Baron AJ,
Lago H, Adams CJ, Peabody DS, Phillips SEV, Stonehouse
NJ, Liljas L, Stockley PG |
(2006) "Structural
Basis of RNA Binding Discrimination between
Bacteriophages Qbeta and MS2." Structure,
14, 487-495. doi: 10.1016/j.str.2005.12.006.
|
RNA stemloop from bacteriophage qbeta complexed with an
n87s mutant ms2 capsid . SNAP output
|
1zzn
|
structural protein-RNA |
X-ray (3.37 Å) |
Stahley MR, Strobel SA |
(2005) "Structural
evidence for a two-metal-ion mechanism of group I
intron splicing." Science,
309, 1587-1590. doi: 10.1126/science.1114994.
|
Crystal structure of a group i intron-two exon complex
that includes all catalytic metal ion ligands. .
SNAP output
|
2a1r
|
hydrolase-RNA |
X-ray (2.6 Å) |
Wu M, Reuter M, Lilie H, Liu Y, Wahle E, Song H |
(2005) "Structural
insight into poly(A) binding and catalytic mechanism of
human PARN." Embo J., 24,
4082-4093. doi: 10.1038/sj.emboj.7600869.
|
Crystal structure of parn nuclease domain . SNAP output
|
2a8v
|
protein-RNA |
X-ray (2.4 Å) |
Bogden CE, Fass D, Bergman N, Nichols MD, Berger
JM |
(1999) "The
structural basis for terminator recognition by the Rho
transcription termination factor."
Mol.Cell, 3, 487-493. doi:
10.1016/S1097-2765(00)80476-1.
|
Rho transcription termination factor-RNA complex .
SNAP output
|
2a9x
|
RNA binding protein-RNA |
NMR |
Leeper TC, Athanassiou Z, Dias RL, Robinson JA,
Varani G |
(2005) "TAR RNA
recognition by a cyclic peptidomimetic of Tat
protein." Biochemistry,
44, 12362-12372. doi: 10.1021/bi0510532.
|
Tar RNA recognition by a cyclic peptidomimetic of tat
protein . SNAP
output
|
2ab4
|
isomerase-RNA |
X-ray (2.4 Å) |
Phannachet K, Elias Y, Huang RH |
(2005) "Dissecting
the roles of a strictly conserved tyrosine in substrate
recognition and catalysis by pseudouridine 55
synthase." Biochemistry,
44, 15488-15494. doi: 10.1021/bi050961w.
|
Dissecting the roles of a strictly conserved tyrosine
in substrate recognition and catalysis by pseudouridine
55 synthase . SNAP
output
|
2ad9
|
RNA binding protein-RNA |
NMR |
Oberstrass FC, Auweter SD, Erat M, Hargous Y, Henning
A, Wenter P, Reymond L, Amir-Ahmady B, Pitsch S, Black
DL, Allain FHT |
(2005) "Structure
of PTB bound to RNA: specific binding and implications
for splicing regulation." Science,
309, 2054-2057. doi: 10.1126/science.1114066.
|
Solution structure of polypyrimidine tract binding
protein rbd1 complexed with cucucu RNA . SNAP output
|
2adb
|
RNA binding protein-RNA |
NMR |
Oberstrass FC, Auweter SD, Erat M, Hargous Y, Henning
A, Wenter P, Reymond L, Amir-Ahmady B, Pitsch S, Black
DL, Allain FHT |
(2005) "Structure
of PTB bound to RNA: specific binding and implications
for splicing regulation." Science,
309, 2054-2057. doi: 10.1126/science.1114066.
|
Solution structure of polypyrimidine tract binding
protein rbd2 complexed with cucucu RNA . SNAP output
|
2adc
|
RNA binding protein-RNA |
NMR |
Oberstrass FC, Auweter SD, Erat M, Hargous Y, Henning
A, Wenter P, Reymond L, Amir-Ahmady B, Pitsch S, Black
DL, Allain FHT |
(2005) "Structure
of PTB bound to RNA: specific binding and implications
for splicing regulation." Science,
309, 2054-2057. doi: 10.1126/science.1114066.
|
Solution structure of polypyrimidine tract binding
protein rbd34 complexed with cucucu RNA . SNAP output
|
2ake
|
ligase-RNA |
X-ray (3.1 Å) |
Shen N, Guo L, Yang B, Jin Y, Ding J |
(2006) "Structure
of human tryptophanyl-tRNA synthetase in complex with
tRNA(Trp) reveals the molecular basis of tRNA
recognition and specificity." Nucleic Acids
Res., 34, 3246-3258. doi:
10.1093/nar/gkl441.
|
Structure of human tryptophanyl-trna synthetase in
complex with trna(trp) . SNAP output
|
2ann
|
RNA-binding protein-RNA |
X-ray (2.3 Å) |
Teplova M, Malinina L, Darnell JC, Song J, Lu M,
Abagyan R, Musunuru K, Teplov A, Burley SK, Darnell RB,
Patel DJ |
(2011) "Protein-RNA
and protein-protein recognition by dual KH1/2 domains
of the neuronal splicing factor Nova-1."
Structure, 19, 930-944. doi:
10.1016/j.str.2011.05.002.
|
Crystal structure (i) of nova-1 kh1-kh2 domain tandem
with 25 nt RNA hairpin . SNAP output
|
2anr
|
RNA-binding protein-RNA |
X-ray (1.94 Å) |
Teplova M, Malinina L, Darnell JC, Song J, Lu M,
Abagyan R, Musunuru K, Teplov A, Burley SK, Darnell RB,
Patel DJ |
(2011) "Protein-RNA
and protein-protein recognition by dual KH1/2 domains
of the neuronal splicing factor Nova-1."
Structure, 19, 930-944. doi:
10.1016/j.str.2011.05.002.
|
Crystal structure (ii) of nova-1 kh1-kh2 domain tandem
with 25nt RNA hairpin . SNAP output
|
2asb
|
transcription-RNA |
X-ray (1.5 Å) |
Beuth B, Pennell S, Arnvig KB, Martin SR, Taylor
IA |
(2005) "Structure
of a Mycobacterium tuberculosis NusA-RNA complex."
Embo J., 24, 3576-3587. doi:
10.1038/sj.emboj.7600829.
|
Structure of a mycobacterium tuberculosis nusa-RNA
complex . SNAP
output
|
2atw
|
transcription-RNA |
X-ray (2.25 Å) |
Beuth B, Pennell S, Arnvig KB, Martin SR, Taylor
IA |
(2005) "Structure
of a Mycobacterium tuberculosis NusA-RNA complex."
Embo J., 24, 3576-3587. doi:
10.1038/sj.emboj.7600829.
|
Structure of a mycobacterium tuberculosis nusa-RNA
complex . SNAP
output
|
2az0
|
viral protein-RNA |
X-ray (2.6 Å) |
Chao JA, Lee JH, Chapados BR, Debler EW, Schneemann
A, Williamson JR |
(2005) "Dual
modes of RNA-silencing suppression by Flock House virus
protein B2." Nat.Struct.Mol.Biol.,
12, 952-957. doi: 10.1038/nsmb1005.
|
Flock house virus b2-dsrna complex (p212121) . SNAP output
|
2az2
|
viral protein-RNA |
X-ray (2.6 Å) |
Chao JA, Lee JH, Chapados BR, Debler EW, Schneemann
A, Williamson JR |
(2005) "Dual
modes of RNA-silencing suppression by Flock House virus
protein B2." Nat.Struct.Mol.Biol.,
12, 952-957. doi: 10.1038/nsmb1005.
|
Flock house virus b2-dsrna complex (p4122) . SNAP output
|
2azx
|
ligase-RNA |
X-ray (2.8 Å) |
Yang XL, Otero FJ, Ewalt KL, Liu J, Swairjo MA,
Kohrer C, RajBhandary UL, Skene RJ, McRee DE, Schimmel
P |
(2006) "Two
conformations of a crystalline human tRNA
synthetase-tRNA complex: implications for protein
synthesis." Embo J., 25,
2919-2929. doi: 10.1038/sj.emboj.7601154.
|
Charged and uncharged trnas adopt distinct
conformations when complexed with human
tryptophanyl-trna synthetase . SNAP output
|
2b2d
|
virus-viral protein-RNA |
X-ray (2.9 Å) |
Horn WT, Tars K, Grahn E, Helgstrand C, Baron AJ,
Lago H, Adams CJ, Peabody DS, Phillips SEV, Stonehouse
NJ, Liljas L, Stockley PG |
(2006) "Structural
basis of RNA binding discrimination between
bacteriophages Qbeta and MS2." Structure,
14, 487-495. doi: 10.1016/j.str.2005.12.006.
|
RNA stemloop operator from bacteriophage qbeta
complexed with an n87s,e89k mutant ms2 capsid .
SNAP output
|
2b2e
|
virus-viral protein-RNA |
X-ray (3.15 Å) |
Horn WT, Tars K, Grahn E, Helgstrand C, Baron AJ,
Lago H, Adams CJ, Peabody DS, Phillips SEV, Stonehouse
NJ, Liljas L, Stockley PG |
(2006) "Structural
basis of RNA binding discrimination between
bacteriophages Qbeta and MS2." Structure,
14, 487-495. doi: 10.1016/j.str.2005.12.006.
|
RNA stemloop from bacteriophage ms2 complexed with an
n87s,e89k mutant ms2 capsid . SNAP output
|
2b2g
|
virus-viral protein-RNA |
X-ray (3.02 Å) |
Horn WT, Tars K, Grahn E, Helgstrand C, Baron AJ,
Lago H, Adams CJ, Peabody DS, Phillips SEV, Stonehouse
NJ, Liljas L, Stockley PG |
(2006) "Structural
basis of RNA binding discrimination between
bacteriophages Qbeta and MS2." Structure,
14, 487-495. doi: 10.1016/j.str.2005.12.006.
|
Ms2 wild-type RNA stemloop complexed with an n87s
mutant ms2 capsid . SNAP
output
|
2b3j
|
hydrolase-RNA |
X-ray (2.0 Å) |
Losey HC, Ruthenburg AJ, Verdine GL |
(2006) "Crystal
structure of Staphylococcus aureus tRNA adenosine
deaminase TadA in complex with RNA."
Nat.Struct.Mol.Biol., 13,
153-159. doi: 10.1038/nsmb1047.
|
Crystal structure of staphylococcus aureus trna
adenosine deaminase, tada, in complex with RNA .
SNAP output
|
2b63
|
transferase-RNA |
X-ray (3.8 Å) |
Kettenberger H, Eisenfuehr A, Brueckner F, Theis M,
Famulok M, Cramer P |
(2006) "Structure
of an RNA polymerase II-RNA inhibitor complex
elucidates transcription regulation by noncoding
RNAs." Nat.Struct.Mol.Biol.,
13, 44-48. doi: 10.1038/nsmb1032.
|
Complete RNA polymerase ii-RNA inhibitor complex .
SNAP output
|
2b6g
|
RNA binding protein |
NMR |
Johnson PE, Donaldson LW |
(2006) "RNA
recognition by the Vts1p SAM domain."
Nat.Struct.Mol.Biol., 13,
177-178. doi: 10.1038/nsmb1039.
|
RNA recognition by the vts1 sam domain . SNAP output
|
2bbv
|
virus-RNA |
X-ray (2.8 Å) |
Wery JP, Reddy VS, Hosur MV, Johnson JE |
(1994) "The
refined three-dimensional structure of an insect virus
at 2.8 A resolution." J.Mol.Biol.,
235, 565-586. doi: 10.1006/jmbi.1994.1014.
|
The refined three-dimensional structure of an insect
virus at 2.8 angstroms resolution . SNAP output
|
2bgg
|
RNA-binding protein-RNA |
X-ray (2.2 Å) |
Parker JS, Roe SM, Barford D |
(2005) "Structural
Insights Into Mrna Recognition from a Piwi Domain-Sirna
Guide Complex." Nature,
434, 663. doi: 10.1038/NATURE03462.
|
The structure of a piwi protein from archaeoglobus
fulgidus complexed with a 16nt sirna duplex. . SNAP output
|
2bh2
|
transferase |
X-ray (2.15 Å) |
Lee TT, Agarwalla S, Stroud RM |
(2005) "A Unique
RNA Fold in the Ruma-RNA-Cofactor Ternary Complex
Contributes to Substrate Selectivity and Enzymatic
Function." Cell(Cambridge,Mass.),
120, 599. doi: 10.1016/J.CELL.2004.12.037.
|
Crystal structure of e. coli 5-methyluridine
methyltransferase ruma in complex with ribosomal RNA
substrate and s-adenosylhomocysteine. . SNAP output
|
2bny
|
virus |
X-ray (3.0 Å) |
Horn WT, Tars K, Grahn E, Helgstrand C, Baron AJ,
Lago H, Adams CJ, Peabody DS, Phillips SEV, Stonehouse
NJ, Liljas L, Stockley PG |
(2006) "Structural
Basis of RNA Binding Discrimination between
Bacteriophages Qbeta and MS2." Structure,
14, 487. doi: 10.1016/J.STR.2005.12.006.
|
Ms2 (n87a mutant) - RNA hairpin complex . SNAP output
|
2bq5
|
virus-RNA |
X-ray (2.91 Å) |
Horn WT, Tars K, Grahn E, Helgstrand C, Baron AJ,
Lago H, Adams CJ, Peabody DS, Phillips SEV, Stonehouse
NJ, Liljas L, Stockley PG |
(2006) "Structural
Basis of RNA Binding Discrimination between
Bacteriophages Qbeta and MS2." Structure,
14, 487. doi: 10.1016/J.STR.2005.12.006.
|
Ms2 (n87ae89k mutant) - RNA hairpin complex . SNAP output
|
2bs0
|
virus-RNA |
X-ray (2.45 Å) |
Horn WT, Tars K, Grahn E, Helgstrand C, Baron AJ,
Lago H, Adams CJ, Peabody DS, Phillips SEV, Stonehouse
NJ, Liljas L, Stockley PG |
(2006) "Structural
Basis of RNA Binding Discrimination between
Bacteriophages Qbeta and MS2." Structure,
14, 487. doi: 10.1016/J.STR.2005.12.006.
|
Ms2 (n87ae89k mutant) - variant qbeta RNA hairpin
complex . SNAP
output
|
2bs1
|
virus-RNA |
X-ray (2.8 Å) |
Horn WT, Tars K, Grahn E, Helgstrand C, Baron AJ,
Lago H, Adams CJ, Peabody DS, Phillips SEV, Stonehouse
NJ, Liljas L, Stockley PG |
(2006) "Structural
Basis of RNA Binding Discrimination between
Bacteriophages Qbeta and MS2." Structure,
14, 487. doi: 10.1016/J.STR.2005.12.006.
|
Ms2 (n87ae89k mutant) - qbeta RNA hairpin complex .
SNAP output
|
2bte
|
ligase |
X-ray (2.9 Å) |
Tukalo M, Yaremchuk A, Fukunaga R, Yokoyama S, Cusack
S |
(2005) "The
Crystal Structure of Leucyl-tRNA Synthetase Complexed
with tRNA(Leu) in the Post-Transfer- Editing
Conformation." Nat.Struct.Mol.Biol.,
12, 923. doi: 10.1038/NSMB986.
|
Thermus thermophilus leucyl-trna synthetase complexed
with a trnaleu transcript in the post-editing
conformation and a post- transfer editing substrate
analogue . SNAP
output
|
2bu1
|
virus-RNA |
X-ray (2.2 Å) |
Grahn E, Moss T, Helgstrand C, Fridborg K, Sundaram
M, Tars K, Lago H, Stonehouse NJ, Davis DR, Stockley PG,
Liljas L |
(2001) "Structural
basis of pyrimidine specificity in the MS2 RNA
hairpin-coat-protein complex." Rna,
7, 1616-1627.
|
Ms2-RNA hairpin (5bru -5) complex . SNAP output
|
2bx2
|
hydrolase |
X-ray (2.85 Å) |
Callaghan AJ, Marcaida MJ, Stead JA, Mcdowall KJ,
Scott WG, Luisi BF |
(2005) "Structure
of E. Coli Rnase E Catalytic Domain and Implications
for RNA Processing and Turnover." Nature,
437, 1187. doi: 10.1038/NATURE04084.
|
Catalytic domain of e. coli rnase e . SNAP output
|
2byt
|
synthetase |
X-ray (3.3 Å) |
Tukalo M, Yaremchuk A, Fukunaga R, Yokoyama S, Cusack
S |
(2005) "The
Crystal Structure of Leucyl-tRNA Synthetase Complexed
with tRNA(Leu) in the Post-Transfer-Editing
Conformation." Nat.Struct.Mol.Biol.,
12, 923. doi: 10.1038/NSMB986.
|
Thermus thermophilus leucyl-trna synthetase complexed
with a trnaleu transcript in the post-editing
conformation . SNAP
output
|
2c06
|
toxin |
NMR |
Kamphuis MB, Bonvin AMJJ, Monti MC, Lemonnier M,
Munoz-Gomez A, Van Den Heuvel RHH, Diaz-Orejas R, Boelens
R |
(2006) "Model
for RNA Binding and the Catalytic Site of the Rnase Kid
of the Bacterial Pard Toxin-Antitoxin System."
J.Mol.Biol., 357, 115. doi:
10.1016/J.JMB.2005.12.033.
|
NMR-based model of the complex of the toxin kid and a
5-nucleotide substrate RNA fragment (auaca) . SNAP output
|
2c0b
|
hydrolase |
X-ray (3.18 Å) |
Callaghan AJ, Marcaida MJ, Stead JA, Mcdowall KJ,
Scott WG, Luisi BF |
(2005) "Structure
of E. Coli Rnase E Catalytic Domain and Implications
for RNA Processing and Turnover." Nature,
437, 1187. doi: 10.1038/NATURE04084.
|
Catalytic domain of e. coli rnase e in complex with
13-mer RNA . SNAP
output
|
2c4q
|
virus-RNA |
X-ray (2.38 Å) |
Grahn E, Moss T, Helgstrand C, Fridborg K, Sundaram
M, Tars K, Lago H, Stonehouse NJ, Davis DR, Stockley PG,
Liljas L |
(2001) "Structural
basis of pyrimidine specificity in the MS2 RNA
hairpin-coat-protein complex." Rna,
7, 1616-1627.
|
Ms2-RNA hairpin (2one -5) complex . SNAP output
|
2c4r
|
hydrolase |
X-ray (3.6 Å) |
Callaghan AJ, Marcaida MJ, Stead JA, McDowall KJ,
Scott WG, Luisi BF |
(2005) "Structure
of E. Coli Rnase E Catalytic Domain and Implications
for RNA Processing and Turnover." Nature,
437, 1187. doi: 10.1038/NATURE04084.
|
Catalytic domain of e. coli rnase e . SNAP output
|
2c4y
|
virus-RNA |
X-ray (2.68 Å) |
Grahn E, Moss T, Helgstrand C, Fridborg K, Sundaram
M, Tars K, Lago H, Stonehouse NJ, Davis DR, Stockley PG,
Liljas L |
(2001) "Structural
basis of pyrimidine specificity in the MS2 RNA
hairpin-coat-protein complex." Rna,
7, 1616-1627.
|
Ms2-RNA hairpin (2thiouracil-5) complex . SNAP output
|
2c4z
|
virus-RNA |
X-ray (2.6 Å) |
Grahn E, Moss T, Helgstrand C, Fridborg K, Sundaram
M, Tars K, Lago H, Stonehouse NJ, Davis DR, Stockley PG,
Liljas L |
(2001) "Structural
basis of pyrimidine specificity in the MS2 RNA
hairpin-coat-protein complex." Rna,
7, 1616-1627.
|
Ms2-RNA hairpin (2su -5-6) complex . SNAP output
|
2c50
|
virus-RNA |
X-ray (2.65 Å) |
Grahn E, Moss T, Helgstrand C, Fridborg K, Sundaram
M, Tars K, Lago H, Stonehouse NJ, Davis DR, Stockley PG,
Liljas L |
(2001) "Structural
basis of pyrimidine specificity in the MS2 RNA
hairpin-coat-protein complex." Rna,
7, 1616-1627.
|
Ms2-RNA hairpin (a -5) complex . SNAP output
|
2c51
|
virus-RNA |
X-ray (2.8 Å) |
Grahn E, Moss T, Helgstrand C, Fridborg K, Sundaram
M, Tars K, Lago H, Stonehouse NJ, Davis DR, Stockley PG,
Liljas L |
(2001) "Structural
basis of pyrimidine specificity in the MS2 RNA
hairpin-coat-protein complex." Rna,
7, 1616-1627.
|
Ms2-RNA hairpin (g -5) complex . SNAP output
|
2cjk
|
RNA binding protein |
NMR |
Perez-Canadillas JM |
(2006) "Grabbing
the message: structural basis of mRNA 3'UTR recognition
by Hrp1." EMBO J., 25,
3167-3178. doi: 10.1038/sj.emboj.7601190.
|
Structure of the RNA binding domain of hrp1 in complex
with RNA . SNAP
output
|
2csx
|
ligase-RNA |
X-ray (2.7 Å) |
Nakanishi K, Ogiso Y, Nakama T, Fukai S, Nureki
O |
(2005) "Structural
basis for anticodon recognition by methionyl-tRNA
synthetase." Nat.Struct.Mol.Biol.,
12, 931-932. doi: 10.1038/nsmb988.
|
Crystal structure of aquifex aeolicus methionyl-trna
synthetase complexed with trna(met) . SNAP output
|
2ct8
|
ligase-RNA |
X-ray (2.7 Å) |
Nakanishi K, Ogiso Y, Nakama T, Fukai S, Nureki
O |
(2005) "Structural
basis for anticodon recognition by methionyl-tRNA
synthetase." Nat.Struct.Mol.Biol.,
12, 931-932. doi: 10.1038/nsmb988.
|
Crystal structure of aquifex aeolicus methionyl-trna
synthetase complexed with trna(met) and
methionyl-adenylate anologue . SNAP output
|
2cv0
|
ligase-RNA |
X-ray (2.4 Å) |
Sekine S, Shichiri M, Bernier S, Chenevert R,
Lapointe J, Yokoyama S |
(2006) "Structural
bases of transfer RNA-dependent amino acid recognition
and activation by glutamyl-tRNA synthetase."
Structure, 14, 1791-1799.
doi: 10.1016/j.str.2006.10.005.
|
Glutamyl-trna synthetase from thermus thermophilus in
complex with trna(glu) and l-glutamate . SNAP output
|
2cv1
|
ligase-RNA |
X-ray (2.41 Å) |
Sekine S, Yokoyama S |
"Glutamyl-tRNA synthetase from Thermus thermophilus
in complex with tRNA(Glu), ATP, and an analog of
L-glutamate: a quaternary complex." |
Glutamyl-trna synthetase from thermus thermophilus in
complex with trna(glu), atp, and an analog of
l-glutamate: a quaternary complex . SNAP output
|
2cv2
|
ligase-RNA |
X-ray (2.69 Å) |
Sekine S, Shichiri M, Bernier S, Chenevert R,
Lapointe J, Yokoyama S |
(2006) "Structural
bases of transfer RNA-dependent amino acid recognition
and activation by glutamyl-tRNA synthetase."
Structure, 14, 1791-1799.
doi: 10.1016/j.str.2006.10.005.
|
Glutamyl-trna synthetase from thermus thermophilus in
complex with trna(glu) and an enzyme inhibitor, glu-ams
. SNAP output
|
2czj
|
RNA binding protein-RNA |
X-ray (3.01 Å) |
Bessho Y, Shibata R, Sekine S, Murayama K,
Higashijima K, Hori-Takemoto C, Shirouzu M, Kuramitsu S,
Yokoyama S |
(2007) "Structural
basis for functional mimicry of long-variable-arm tRNA
by transfer-messenger RNA."
Proc.Natl.Acad.Sci.Usa, 104,
8293-8298. doi: 10.1073/pnas.0700402104.
|
Crystal structure of the trna domain of tmrna from
thermus thermophilus hb8 . SNAP output
|
2d3o
|
ribosome |
X-ray (3.35 Å) |
Schlunzen F, Wilson DN, Tian P, Harms JM, McInnes SJ,
Hansen HA, Albrecht R, Buerger J, Wilbanks SM, Fucini
P |
(2005) "The
Binding Mode of the Trigger Factor on the Ribosome:
Implications for Protein Folding and SRP
Interaction." Structure,
13, 1685-1694. doi: 10.1016/j.str.2005.08.007.
|
Structure of ribosome binding domain of the trigger
factor on the 50s ribosomal subunit from d. radiodurans
. SNAP output
|
2d6f
|
ligase-RNA |
X-ray (3.15 Å) |
Oshikane H, Sheppard K, Fukai S, Nakamura Y, Ishitani
R, Numata T, Sherrer RL, Feng L, Schmitt E, Panvert M,
Blanquet S, Mechulam Y, Soll D, Nureki O |
(2006) "Structural
basis of RNA-dependent recruitment of glutamine to the
genetic code." Science,
312, 1950-1954. doi: 10.1126/science.1128470.
|
Crystal structure of glu-trna(gln) amidotransferase in
the complex with trna(gln) . SNAP output
|
2der
|
transferase-RNA |
X-ray (3.1 Å) |
Numata T, Ikeuchi Y, Fukai S, Suzuki T, Nureki O |
(2006) "Snapshots
of tRNA sulphuration via an adenylated
intermediate." Nature,
442, 419-424. doi: 10.1038/nature04896.
|
Cocrystal structure of an RNA sulfuration enzyme mnma
and trna-glu in the initial trna binding state .
SNAP output
|
2det
|
transferase-RNA |
X-ray (3.4 Å) |
Numata T, Ikeuchi Y, Fukai S, Suzuki T, Nureki O |
(2006) "Snapshots
of tRNA sulphuration via an adenylated
intermediate." Nature,
442, 419-424. doi: 10.1038/nature04896.
|
Cocrystal structure of an RNA sulfuration enzyme mnma
and trna-glu in the pre-reaction state . SNAP output
|
2deu
|
transferase-RNA |
X-ray (3.4 Å) |
Numata T, Ikeuchi Y, Fukai S, Suzuki T, Nureki O |
(2006) "Snapshots
of tRNA sulphuration via an adenylated
intermediate." Nature,
442, 419-424. doi: 10.1038/nature04896.
|
Cocrystal structure of an RNA sulfuration enzyme mnma
and trna-glu in the adenylated intermediate state .
SNAP output
|
2dr2
|
ligase-RNA |
X-ray (3.0 Å) |
Shen N, Guo L, Yang B, Jin Y, Ding J |
(2006) "Structure
of human tryptophanyl-tRNA synthetase in complex with
tRNA(Trp) reveals the molecular basis of tRNA
recognition and specificity." Nucleic Acids
Res., 34, 3246-3258. doi:
10.1093/nar/gkl441.
|
Structure of human tryptophanyl-trna synthetase in
complex with trna(trp) . SNAP output
|
2dr5
|
transferase-RNA |
X-ray (2.8 Å) |
Tomita K, Ishitani R, Fukai S, Nureki O |
(2006) "Complete
crystallographic analysis of the dynamics of CCA
sequence addition." Nature,
443, 956-960. doi: 10.1038/nature05204.
|
Complex structure of cca adding enzyme with mini-helix
lacking cca . SNAP
output
|
2dr7
|
transferase-RNA |
X-ray (2.8 Å) |
Tomita K, Ishitani R, Fukai S, Nureki O |
(2006) "Complete
crystallographic analysis of the dynamics of CCA
sequence addition." Nature,
443, 956-960. doi: 10.1038/nature05204.
|
Complex structure of cca-adding enzyme with trnaminidc
. SNAP output
|
2dr8
|
transferase-RNA |
X-ray (2.5 Å) |
Tomita K, Ishitani R, Fukai S, Nureki O |
(2006) "Complete
crystallographic analysis of the dynamics of CCA
sequence addition." Nature,
443, 956-960. doi: 10.1038/nature05204.
|
Complex structure of cca-adding enzyme with trnaminidc
and ctp . SNAP
output
|
2dr9
|
transferase-RNA |
X-ray (2.8 Å) |
Tomita K, Ishitani R, Fukai S, Nureki O |
(2006) "Complete
crystallographic analysis of the dynamics of CCA
sequence addition." Nature,
443, 956-960. doi: 10.1038/nature05204.
|
Complex structure of cca-adding enzyme with trnaminidcc
. SNAP output
|
2dra
|
transferase-RNA |
X-ray (2.5 Å) |
Tomita K, Ishitani R, Fukai S, Nureki O |
(2006) "Complete
crystallographic analysis of the dynamics of CCA
sequence addition." Nature,
443, 956-960. doi: 10.1038/nature05204.
|
Complex structure of cca-adding enzyme with trnaminidcc
and atp . SNAP
output
|
2drb
|
transferase-RNA |
X-ray (2.8 Å) |
Tomita K, Ishitani R, Fukai S, Nureki O |
(2006) "Complete
crystallographic analysis of the dynamics of CCA
sequence addition." Nature,
443, 956-960. doi: 10.1038/nature05204.
|
Complex structure of cca-adding enzyme with trnaminicca
. SNAP output
|
2du3
|
ligase-RNA |
X-ray (2.6 Å) |
Fukunaga R, Yokoyama S |
(2007) "Structural
insights into the first step of RNA-dependent cysteine
biosynthesis in archaea."
Nat.Struct.Mol.Biol., 14,
272-279. doi: 10.1038/nsmb1219.
|
Crystal structure of archaeoglobus fulgidus
o-phosphoseryl-trna synthetase complexed with trnacys
and o-phosphoserine . SNAP output
|
2du4
|
ligase-RNA |
X-ray (2.8 Å) |
Fukunaga R, Yokoyama S |
(2007) "Structural
insights into the first step of RNA-dependent cysteine
biosynthesis in archaea."
Nat.Struct.Mol.Biol., 14,
272-279. doi: 10.1038/nsmb1219.
|
Crystal structure of archaeoglobus fulgidus
o-phosphoseryl-trna synthetase complexed with trnacys .
SNAP output
|
2du5
|
ligase-RNA |
X-ray (3.2 Å) |
Fukunaga R, Yokoyama S |
(2007) "Structural
insights into the first step of RNA-dependent cysteine
biosynthesis in archaea."
Nat.Struct.Mol.Biol., 14,
272-279. doi: 10.1038/nsmb1219.
|
Crystal structure of archaeoglobus fulgidus
o-phosphoseryl-trna synthetase e418n-e420n mutant
complexed with trnaopal and o-phosphoserine ("opal
complex") . SNAP
output
|
2du6
|
ligase-RNA |
X-ray (3.3 Å) |
Fukunaga R, Yokoyama S |
(2007) "Structural
insights into the first step of RNA-dependent cysteine
biosynthesis in archaea."
Nat.Struct.Mol.Biol., 14,
272-279. doi: 10.1038/nsmb1219.
|
Crystal structure of archaeoglobus fulgidus
o-phosphoseryl-trna synthetase e418n-e420n mutant
complexed with trnaamber and o-phosphoserine ("amber
complex") . SNAP
output
|
2dvi
|
transferase-RNA |
X-ray (2.61 Å) |
Tomita K, Ishitani R, Fukai S, Nureki O |
(2006) "Complete
crystallographic analysis of the dynamics of CCA
sequence addition." Nature,
443, 956-960. doi: 10.1038/nature05204.
|
Complex structure of cca-adding enzyme, mini-dcc and
ctp . SNAP output
|
2dxi
|
ligase-RNA |
X-ray (2.2 Å) |
Sekine S, Shichiri M, Bernier S, Chenevert R,
Lapointe J, Yokoyama S |
(2006) "Structural
bases of transfer RNA-dependent amino acid recognition
and activation by glutamyl-tRNA synthetase."
Structure, 14, 1791-1799.
doi: 10.1016/j.str.2006.10.005.
|
2.2 a crystal structure of glutamyl-trna synthetase
from thermus thermophilus complexed with trna(glu),
atp, and l-glutamol . SNAP output
|
2e5l
|
ribosome |
X-ray (3.3 Å) |
Kaminishi T, Wilson DN, Takemoto C, Harms JM, Kawazoe
M, Schluenzen F, Hanawa-Suetsugu K, Shirouzu M, Fucini P,
Yokoyama S |
(2007) "A
snapshot of the 30S ribosomal subunit capturing mRNA
via the Shine-Dalgarno interaction."
Structure, 15, 289-297. doi:
10.1016/j.str.2006.12.008.
|
A snapshot of the 30s ribosomal subunit capturing mrna
via the shine- dalgarno interaction . SNAP output
|
2e9r
|
transferase-RNA |
X-ray (2.81 Å) |
Ferrer-Orta C, Arias A, Perez-Luque R, Escarmis C,
Domingo E, Verdaguer N |
(2007) "Sequential
structures provide insights into the fidelity of RNA
replication." Proc.Natl.Acad.Sci.Usa,
104, 9463-9468. doi: 10.1073/pnas.0700518104.
|
Foot-and-mouth disease virus RNA-dependent RNA
polymerase in complex with a template-primer RNA and
with ribavirin . SNAP
output
|
2e9t
|
transferase-RNA |
X-ray (2.6 Å) |
Ferrer-Orta C, Arias A, Perez-Luque R, Escarmis C,
Domingo E, Verdaguer N |
(2007) "Sequential
structures provide insights into the fidelity of RNA
replication." Proc.Natl.Acad.Sci.Usa,
104, 9463-9468. doi: 10.1073/pnas.0700518104.
|
Foot-and-mouth disease virus RNA-polymerase RNA
dependent in complex with a template-primer RNA and
5f-utp . SNAP output
|
2e9z
|
transferase-RNA |
X-ray (3.0 Å) |
Ferrer-Orta C, Arias A, Perez-Luque R, Escarmis C,
Domingo E, Verdaguer N |
(2007) "Sequential
structures provide insights into the fidelity of RNA
replication." Proc.Natl.Acad.Sci.Usa,
104, 9463-9468. doi: 10.1073/pnas.0700518104.
|
Foot-and-mouth disease virus RNA-polymerase in complex
with a template- primer RNA, atp and utp . SNAP output
|
2ec0
|
transferase-RNA |
X-ray (2.75 Å) |
Ferrer-Orta C, Arias A, Perez-Luque R, Escarmis C,
Domingo E, Verdaguer N |
(2007) "Sequential
structures provide insights into the fidelity of RNA
replication." Proc.Natl.Acad.Sci.Usa,
104, 9463-9468. doi: 10.1073/pnas.0700518104.
|
RNA-dependent RNA polymerase of foot-and-mouth disease
virus in complex with a template-primer RNA and atp .
SNAP output
|
2err
|
RNA binding protein |
NMR |
Auweter SD, Fasan R, Reymond L, Underwood JG, Black
DL, Pitsch S, Allain FH |
(2006) "Molecular
basis of RNA recognition by the human alternative
splicing factor Fox-1." Embo J.,
25, 163-173. doi: 10.1038/sj.emboj.7600918.
|
NMR structure of the RNA binding domain of human fox-1
in complex with ugcaugu . SNAP output
|
2ese
|
protein-RNA complex |
NMR |
Oberstrass FC, Lee A, Stefl R, Janis M, Chanfreau G,
Allain FH |
(2006) "Shape-specific
recognition in the structure of the Vts1p SAM domain
with RNA." Nat.Struct.Mol.Biol.,
13, 160-167. doi: 10.1038/nsmb1038.
|
Structure of the sam domain of vts1p in complex with
RNA . SNAP output
|
2ez6
|
hydrolase-RNA |
X-ray (2.05 Å) |
Gan J, Tropea JE, Austin BP, Court DL, Waugh DS, Ji
X |
(2006) "Structural
Insight into the Mechanism of Double-Stranded RNA
Processing by Ribonuclease III."
Cell(Cambridge,Mass.), 124,
355-366. doi: 10.1016/j.cell.2005.11.034.
|
Crystal structure of aquifex aeolicus rnase iii (d44n)
complexed with product of double-stranded RNA
processing . SNAP
output
|
2f4v
|
ribosome |
X-ray (3.8 Å) |
Murray JB, Meroueh SO, Russell RJ, Lentzen G, Haddad
J, Mobashery S |
(2006) "Interactions
of designer antibiotics and the bacterial ribosome
aminoacyl-tRNA site." Chem.Biol.,
13, 129-138. doi: 10.1016/j.chembiol.2005.11.004.
|
30s ribosome + designer antibiotic . SNAP output
|
2f8k
|
RNA binding protein- RNA |
X-ray (2.0 Å) |
Aviv T, Lin Z, Ben-Ari G, Smibert CA, Sicheri F |
(2006) "Sequence-specific
recognition of RNA hairpins by the SAM domain of
Vts1p." Nat.Struct.Mol.Biol.,
13, 168-176. doi: 10.1038/nsmb1053.
|
Sequence specific recognition of RNA hairpins by the
sam domain of vts1 . SNAP output
|
2f8s
|
RNA binding protein-RNA |
X-ray (3.0 Å) |
Yuan YR, Pei Y, Chen HY, Tuschl T, Patel DJ |
(2006) "A
Potential Protein-RNA Recognition Event along the
RISC-Loading Pathway from the Structure of A. aeolicus
Argonaute with Externally Bound siRNA."
Structure, 14, 1557-1565.
doi: 10.1016/j.str.2006.08.009.
|
Crystal structure of aa-ago with externally-bound sirna
. SNAP output
|
2f8t
|
RNA binding protein-RNA |
X-ray (3.1 Å) |
Yuan YR, Pei Y, Chen HY, Tuschl T, Patel DJ |
(2006) "A
Potential Protein-RNA Recognition Event along the
RISC-Loading Pathway from the Structure of A. aeolicus
Argonaute with Externally Bound siRNA."
Structure, 14, 1557-1565.
doi: 10.1016/j.str.2006.08.009.
|
Crystal structure of aa-ago with externally-bound sirna
. SNAP output
|
2fk6
|
hydrolase-RNA |
X-ray (2.9 Å) |
Li de la Sierra-Gallay I, Mathy N, Pellegrini O,
Condon C |
(2006) "Structure
of the ubiquitous 3' processing enzyme RNase Z bound to
transfer RNA." Nat.Struct.Mol.Biol.,
13, 376-377. doi: 10.1038/nsmb1066.
|
Crystal structure of rnase z-trna(thr) complex .
SNAP output
|
2fmt
|
complex (methyltransferase-trna) |
X-ray (2.8 Å) |
Schmitt E, Panvert M, Blanquet S, Mechulam Y |
(1998) "Crystal
structure of methionyl-tRNAfMet transformylase
complexed with the initiator
formyl-methionyl-tRNAfMet." EMBO J.,
17, 6819-6826. doi: 10.1093/emboj/17.23.6819.
|
Methionyl-trnafmet formyltransferase complexed with
formyl-methionyl-trnafmet . SNAP output
|
2fy1
|
structural protein-RNA |
NMR |
Skrisovska L, Bourgeois CF, Stefl R, Grellscheid SN,
Kister L, Wenter P, Elliott DJ, Stevenin J, Allain
FH |
(2007) "The
testis-specific human protein RBMY recognizes RNA
through a novel mode of interaction." EMBO
Rep., 8, 372-379. doi: 10.1038/sj.embor.7400910.
|
A dual mode of RNA recognition by the rbmy protein .
SNAP output
|
2fz2
|
virus-RNA |
X-ray (2.9 Å) |
Larson SB, Lucas RW, Greenwood A, McPherson A |
(2005) "The RNA
of turnip yellow mosaic virus exhibits icosahedral
order." Virology, 334,
245-254. doi: 10.1016/j.virol.2005.01.036.
|
Structure of turnip yellow mosaic virus at 100 k .
SNAP output
|
2g4b
|
RNA binding protein-RNA |
X-ray (2.5 Å) |
Sickmier EA, Frato KE, Paranawithana S, Shen H, Green
MR, Kielkopf CL |
(2006) "Structural
basis of polypyrimidine tract recognition by the
essential splicing factor U2AF65.."
Mol.Cell, 23, 49-59. doi:
10.1016/j.molcel.2006.05.025.
|
Structure of u2af65 variant with polyuridine tract .
SNAP output
|
2gic
|
virus-viral protein-RNA |
X-ray (2.92 Å) |
Green TJ, Zhang X, Wertz GW, Luo M |
(2006) "Structure
of the vesicular stomatitis virus nucleoprotein-RNA
complex unveils how the RNA is sequestered."
Science, 313, 357-360. doi:
10.1126/science.1126953.
|
Crystal structure of a vesicular stomatitis virus
nucleocapsid-RNA complex . SNAP output
|
2gje
|
translation-RNA |
X-ray (3.37 Å) |
Schumacher MA, Karamooz E, Zikova A, Trantirek L,
Lukes J |
(2006) "Crystal
Structures of T. brucei MRP1/MRP2 Guide-RNA Binding
Complex Reveal RNA Matchmaking Mechanism."
Cell(Cambridge,Mass.), 126,
701-711. doi: 10.1016/j.cell.2006.06.047.
|
Structure of a guiderna-binding protein complex bound
to a grna . SNAP
output
|
2gjw
|
hydrolase-RNA |
X-ray (2.85 Å) |
Xue S, Calvin K, Li H |
(2006) "RNA
Recognition and Cleavage by an Splicing
Endonuclease." Science,
312, 902-910. doi: 10.1126/science.1126629.
|
RNA recognition and cleavage by an splicing
endonuclease . SNAP
output
|
2go5
|
translation-RNA |
cryo-EM (7.4 Å) |
Halic M, Gartmann M, Schlenker O, Mielke T, Pool MR,
Sinning I, Beckmann R |
(2006) "Signal
Recognition Particle Receptor Exposes the Ribosomal
Translocon Binding Site." Science,
312, 745-747. doi: 10.1126/science.1124864.
|
Structure of signal recognition particle receptor (sr)
in complex with signal recognition particle (srp) and
ribosome nascent chain complex . SNAP output
|
2gtt
|
viral protein, RNA binding protein |
X-ray (3.49 Å) |
Albertini AAV, Wernimont AK, Muziol T, Ravelli RBG,
Clapier CR, Schoehn G, Weissenhorn W, Ruigrok RWH |
(2006) "Crystal
Structure of the Rabies Virus Nucleoprotein-RNA
Complex." Science, 313,
360-363. doi: 10.1126/science.1125280.
|
Crystal structure of the rabies virus nucleoprotein-RNA
complex . SNAP
output
|
2gxb
|
hydrolase-RNA |
X-ray (2.25 Å) |
Placido D, Brown BA, Lowenhaupt K, Rich A,
Athanasiadis A |
(2007) "A
Left-Handed RNA Double Helix Bound by the Zalpha Domain
of the RNA-Editing Enzyme ADAR1."
Structure, 15, 395-404. doi:
10.1016/j.str.2007.03.001.
|
Crystal structure of the za domain bound to z-RNA .
SNAP output
|
2hgh
|
transcription-RNA |
NMR |
Lee BM, Xu J, Clarkson BK, Martinez-Yamout MA, Dyson
JH, Case DA, Gottesfeld JM, Wright PE |
(2006) "Induced
Fit and 'Lock and Key' Recognition of 5 S RNA by Zinc
Fingers of Transcription Factor IIIA."
J.Mol.Biol., 357, 275-291.
doi: 10.1016/j.jmb.2005.12.010.
|
Transcription factor iiia zinc fingers 4-6 bound to 5s
rrna 55mer (NMR structure) . SNAP output
|
2hhh
|
ribosome |
X-ray (3.35 Å) |
Schluenzen F, Takemoto C, Wilson DN, Kaminishi T,
Harms JM, Hanawa-Suetsugu K, Szaflarski W, Kawazoe M,
Shirouzo M, Nierhaus KH, Yokoyama S, Fucini P |
(2006) "The
antibiotic kasugamycin mimics mRNA nucleotides to
destabilize tRNA binding and inhibit canonical
translation initiation."
Nat.Struct.Mol.Biol., 13,
871-878. doi: 10.1038/nsmb1145.
|
Crystal structure of kasugamycin bound to the 30s
ribosomal subunit . SNAP
output
|
2ht1
|
hydrolase-RNA |
X-ray (3.51 Å) |
Skordalakes E, Berger JM |
(2006) "Structural
Insights into RNA-Dependent Ring Closure and ATPase
Activation by the Rho Termination Factor."
Cell(Cambridge,Mass.), 127,
553-564. doi: 10.1016/j.cell.2006.08.051.
|
The closed ring structure of the rho transcription
termination factor in complex with nucleic acid in the
motor domains . SNAP
output
|
2hw8
|
structural protein-RNA |
X-ray (2.1 Å) |
Tishchenko S, Nikonova E, Nikulin A, Nevskaya N,
Volchkov S, Piendl W, Garber M, Nikonov S |
(2006) "Structure
of the ribosomal protein L1-mRNA complex at 2.1 A
resolution: common features of crystal packing of
L1-RNA complexes." ACTA
CRYSTALLOGR.,SECT.D, 62,
1545-1554. doi: 10.1107/S0907444906041655.
|
Structure of ribosomal protein l1-mrna complex at 2.1
resolution. . SNAP
output
|
2hyi
|
hydrolase-RNA binding protein-RNA |
X-ray (2.3 Å) |
Andersen CBF, Ballut L, Johansen JS, Chamieh H,
Nielsen KH, Oliveira CL, Pedersen JS, Seraphin B, Le Hir
H, Andersen GR |
(2006) "Structure
of the exon junction core complex with a trapped
DEAD-box ATPase bound to RNA." Science,
313, 1968-1972. doi: 10.1126/science.1131981.
|
Structure of the human exon junction complex with a
trapped dead-box helicase bound to RNA . SNAP output
|
2i2y
|
RNA binding protein-chimera-RNA |
NMR |
Hargous Y, Hautbergue GM, Tintaru AM, Skrisovska L,
Golovanov AP, Stevenin J, Lian LY, Wilson SA, Allain
FH |
(2006) "Molecular
basis of RNA recognition and TAP binding by the SR
proteins SRp20 and 9G8." Embo J.,
25, 5126-5137. doi: 10.1038/sj.emboj.7601385.
|
Solution structure of the rrm of srp20 bound to the RNA
cauc . SNAP output
|
2i82
|
lyase-RNA |
X-ray (2.05 Å) |
Hoang C, Chen J, Vizthum CA, Kandel JM, Hamilton CS,
Mueller EG, Ferre-D'Amare AR |
(2006) "Crystal
structure of pseudouridine synthase RluA: indirect
sequence readout through protein-induced RNA
structure." Mol.Cell, 24,
535-545. doi: 10.1016/j.molcel.2006.09.017.
|
Crystal structure of pseudouridine synthase rlua:
indirect sequence readout through protein-induced RNA
structure . SNAP
output
|
2i91
|
RNA binding protein-RNA |
X-ray (2.65 Å) |
Fuchs G, Stein AJ, Fu C, Reinisch KM, Wolin SL |
(2006) "Structural
and biochemical basis for misfolded RNA recognition by
the Ro autoantigen." Nat.Struct.Mol.Biol.,
13, 1002-1009. doi: 10.1038/nsmb1156.
|
60kda ro autoantigen in complex with a fragment of
misfolded RNA . SNAP
output
|
2ihx
|
viral protein-RNA |
NMR |
Zhou J, Bean RL, Vogt VM, Summers M |
(2007) "Solution
Structure of the Rous Sarcoma Virus Nucleocapsid
Protein: muPsi RNA Packaging Signal Complex."
J.Mol.Biol., 365, 453-467.
doi: 10.1016/j.jmb.2006.10.013.
|
Solution structure of the rous sarcoma virus
nucleocapsid protein:upsi RNA packaging signal complex
. SNAP output
|
2ix1
|
hydrolase |
X-ray (2.74 Å) |
Frazao C, Mcvey CE, Amblar M, Barbas A, Vonrhein C,
Arraiano CM, Carrondo MA |
(2006) "Unravelling
the Dynamics of RNA Degradation by Ribonuclease II and
its RNA-Bound Complex." Nature,
443, 110. doi: 10.1038/NATURE05080.
|
Rnase ii d209n mutant . SNAP output
|
2iy5
|
ligase |
X-ray (3.1 Å) |
Moor N, Kotik-Kogan O, Tworowski D, Sukhanova M,
Safro M |
(2006) "The
crystal structure of the ternary complex of
phenylalanyl-tRNA synthetase with tRNAPhe and a
phenylalanyl-adenylate analogue reveals a
conformational switch of the CCA end."
Biochemistry, 45,
10572-10583. doi: 10.1021/bi060491l.
|
Phenylalanyl-trna synthetase from thermus thermophilus
complexed with trna and a phenylalanyl-adenylate analog
. SNAP output
|
2iz8
|
virus-RNA |
X-ray (3.3 Å) |
Helgstrand C, Grahn E, Moss T, Stonehouse NJ, Tars K,
Stockley PG, Liljas L |
(2002) "Investigating
the Structural Basis of Purine Specificity in the
Structures of MS2 Coat Protein RNA Translational
Operator Hairpins." Nucleic Acids Res.,
30, 2678. doi: 10.1093/NAR/GKF371.
|
Ms2-RNA hairpin (c-7) complex . SNAP output
|
2iz9
|
virus-RNA |
X-ray (2.85 Å) |
Grahn E, Stonehouse NJ, Adams CJ, Fridborg K,
Beigelman L, Matulic-Adamic J, Warriner SL, Stockley PG,
Liljas L |
(2000) "Deletion
of a Single Hydrogen Bonding Atom from the MS2 RNA
Operator Leads to Dramatic Rearrangements at the
RNA-Coat Protein Interface." Nucleic Acids
Res., 28, 4611. doi: 10.1093/NAR/28.23.4611.
|
Ms2-RNA hairpin (4one -5) complex . SNAP output
|
2izm
|
virus-RNA |
X-ray (2.7 Å) |
Helgstrand C, Grahn E, Moss T, Stonehouse NJ, Tars K,
Stockley PG, Liljas L |
(2002) "Investigating
the Structural Basis of Purine Specificity in the
Structures of MS2 Coat Protein RNA Translational
Operator Complexes." Nucleic Acids Res.,
30, 2678. doi: 10.1093/NAR/GKF371.
|
Ms2-RNA hairpin (c-10) complex . SNAP output
|
2izn
|
virus-RNA |
X-ray (2.56 Å) |
Helgstrand C, Grahn E, Moss T, Stonehouse NJ, Tars K,
Stockley PG, Liljas L |
(2002) "Investigating
the Structural Basis of Purine Specificity in the
Structures of MS2 Coat Protein RNA Translational
Operator Complexes." Nucleic Acids Res.,
30, 2678. doi: 10.1093/NAR/GKF371.
|
Ms2-RNA hairpin (g-10) complex . SNAP output
|
2j0q
|
hydrolase |
X-ray (3.2 Å) |
Bono F, Ebert J, Lorentzen E, Conti E |
(2006) "The
Crystal Structure of the Exon Junction Complex Reveals
How It Maintains a Stable Grip on Mrna."
Cell(Cambridge,Mass.), 126,
713. doi: 10.1016/J.CELL.2006.08.006.
|
The crystal structure of the exon junction complex at
3.2 Å resolution . SNAP
output
|
2j0s
|
hydrolase |
X-ray (2.21 Å) |
Bono F, Ebert J, Lorentzen E, Conti E |
(2006) "The
Crystal Structure of the Exon Junction Complex Reveals
How It Mantains a Stable Grip on Mrna."
Cell(Cambridge,Mass.), 126,
713. doi: 10.1016/J.CELL.2006.08.006.
|
The crystal structure of the exon junction complex at
2.2 Å resolution . SNAP
output
|
2j28
|
ribosome |
cryo-EM (9.5 Å) |
Halic M, Blau M, Becker T, Mielke T, Pool MR, Wild K,
Sinning I, Beckmann R |
(2006) "Following
the Signal Sequence from Ribosomal Tunnel Exit to
Signal Recognition Particle." Nature,
444, 508-511. doi: 10.1038/nature05326.
|
Model of e. coli srp bound to 70s rncs . SNAP output
|
2j37
|
ribosome |
cryo-EM (8.7 Å) |
Halic M, Blau M, Becker T, Mielke T, Pool MR, Wild K,
Sinning I, Beckmann R |
(2006) "Following
the signal sequence from ribosomal tunnel exit to
signal recognition particle." Nature,
444, 507-511. doi: 10.1038/nature05326.
|
Model of mammalian srp bound to 80s rncs . SNAP output
|
2jlu
|
hydrolase-RNA |
X-ray (2.04 Å) |
Luo D, Xu T, Watson RP, Scherer-Becker D, Sampath A,
Jahnke W, Yeong SS, Wang CH, Lim SP, Strongin A,
Vasudevan SG, Lescar J |
(2008) "Insights
Into RNA Unwinding and ATP Hydrolysis by the Flavivirus
Ns3 Protein." Embo J.,
27, 3209. doi: 10.1038/EMBOJ.2008.232.
|
Dengue virus 4 ns3 helicase in complex with ssrna .
SNAP output
|
2jlv
|
hydrolase-RNA |
X-ray (1.9 Å) |
Luo DH, Xu T, Watson RP, Becker DS, Sampath A, Jahnke
W, Yeong SS, Wang CH, Lim SP, Strongin A, Vasudevan SG,
Lescar J |
(2008) "Insights
Into RNA Unwinding and ATP Hydrolysis by the Flavivirus
Ns3 Protein." Embo J.,
27, 3209. doi: 10.1038/EMBOJ.2008.232.
|
Dengue virus 4 ns3 helicase in complex with ssrna and
amppnp . SNAP output
|
2jlw
|
hydrolase-RNA |
X-ray (2.6 Å) |
Luo DH, Xu T, Watson RP, Becker DS, Sampath A, Jahnke
W, Yeong SS, Wang CH, Lim SP, Strongin A, Vasudevan SG,
Lescar J |
(2008) "Insights
Into RNA Unwinding and ATP Hydrolysis by the Flavivirus
Ns3 Protein." Embo J.,
27, 3209. doi: 10.1038/EMBOJ.2008.232.
|
Dengue virus 4 ns3 helicase in complex with ssrna2 .
SNAP output
|
2jlx
|
hydrolase-RNA |
X-ray (2.2 Å) |
Luo DH, Xu T, Watson RP, Scherer-Becker D, Sampath A,
Jahnke W, Yeong SS, Wang CH, Lim SP, Strongin A,
Vasudevan SG, Lescar J |
(2008) "Insights
Into RNA Unwinding and ATP Hydrolysis by the Flavivirus
Ns3 Protein." Embo J.,
27, 3209. doi: 10.1038/EMBOJ.2008.232.
|
Dengue virus 4 ns3 helicase in complex with ssrna and
adp-vanadate . SNAP
output
|
2jly
|
hydrolase-RNA |
X-ray (2.4 Å) |
Luo D, Xu T, Watson RP, Scherer-Becker D, Sampath A,
Jahnke W, Yeong SS, Wang CH, Lim SP, Strongin A,
Vasudevan SG, Lescar J |
(2008) "Insights
Into RNA Unwinding and ATP Hydrolysis by the Flavivirus
Ns3 Protein." Embo J.,
27, 3209. doi: 10.1038/EMBOJ.2008.232.
|
Dengue virus 4 ns3 helicase in complex with ssrna and
adp-phosphate . SNAP
output
|
2jlz
|
hydrolase-RNA |
X-ray (2.2 Å) |
Luo D, Xu T, Watson RP, Scherer-Becker D, Sampath A,
Jahnke W, Yeong SS, Wang CH, Lim SP, Strongin A,
Vasudevan SG, Lescar J |
(2008) "Insights
Into RNA Unwinding and ATP Hydrolysis by the Flavivirus
Ns3 Protein." Embo J.,
27, 3209. doi: 10.1038/EMBOJ.2008.232.
|
Dengue virus 4 ns3 helicase in complex with ssrna and
adp . SNAP output
|
2jpp
|
translation-RNA |
NMR |
Schubert M, Lapouge K, Duss O, Oberstrass FC,
Jelesarov I, Haas D, Allain FH-T |
(2007) "Molecular
basis of messenger RNA recognition by the specific
bacterial repressing clamp RsmA/CsrA."
Nat.Struct.Mol.Biol., 14,
807-813. doi: 10.1038/nsmb1285.
|
Structural basis of rsma-csra RNA recognition:
structure of rsme bound to the shine-dalgarno sequence
of hcna mrna . SNAP
output
|
2jq7
|
ribosome-antibiotic |
NMR |
Jonker HRA, Ilin S, Grimm SK, Woehnert J, Schwalbe
H |
(2007) "L11
Domain Rearrangement Upon Binding to RNA and
Thiostrepton Studied by NMR Spectroscopy."
Nucleic Acids Res., 35, 441.
doi: 10.1093/NAR/GKL1066.
|
Model for thiostrepton binding to the ribosomal l11-RNA
. SNAP output
|
2kdq
|
RNA binding protein-RNA |
NMR |
Davidson A, Leeper TC, Athanassiou Z,
Patora-Komisarska K, Karn J, Robinson JA, Varani G |
(2009) "Simultaneous
recognition of HIV-1 TAR RNA bulge and loop sequences
by cyclic peptide mimics of Tat protein."
Proc.Natl.Acad.Sci.USA, 106,
11931-11936. doi: 10.1073/pnas.0900629106.
|
Simultaneous recognition of hiv-1 tar RNA bulge and
loop sequences by cyclic peptide mimic of tat protein .
SNAP output
|
2kfy
|
RNA binding protein-RNA |
NMR |
Dominguez C, Fisette JF, Chabot B, Allain FH |
(2010) "Structural
basis of G-tract recognition and encaging by hnRNP F
quasi-RRMs." Nat.Struct.Mol.Biol.,
17, 853-861. doi: 10.1038/nsmb.1814.
|
NMR structure of the first qrrm of hnrnp f in complex
with agggau g-tract RNA . SNAP output
|
2kg0
|
RNA binding protein-RNA |
NMR |
Dominguez C, Fisette JF, Chabot B, Allain FH |
(2010) "Structural
basis of G-tract recognition and encaging by hnRNP F
quasi-RRMs." Nat.Struct.Mol.Biol.,
17, 853-861. doi: 10.1038/nsmb.1814.
|
Structure of the second qrrm domain of hnrnp f in
complex with a agggau g-tract RNA . SNAP output
|
2kg1
|
RNA binding protein-RNA |
NMR |
Dominguez C, Fisette JF, Chabot B, Allain FH |
(2010) "Structural
basis of G-tract recognition and encaging by hnRNP F
quasi-RRMs." Nat.Struct.Mol.Biol.,
17, 853-861. doi: 10.1038/nsmb.1814.
|
Structure of the third qrrm domain of hnrnp f in
complex with a agggau g-tract RNA . SNAP output
|
2kh9
|
splicing-RNA |
NMR |
Martin-Tumasz S, Reiter NJ, Brow DA, Butcher SE |
(2010) "Structure
and functional implications of a complex containing a
segment of U6 RNA bound by a domain of Prp24."
Rna, 16, 792-804. doi:
10.1261/rna.1913310.
|
Solution structure of yeast prp24-rrm2 bound to a
fragment of u6 RNA . SNAP output
|
2km8
|
RNA binding protein-RNA |
NMR |
Leeper TC, Qu X, Lu C, Moore C, Varani G |
(2010) "Novel
Protein-Protein Contacts Facilitate mRNA 3'-Processing
Signal Recognition by Rna15 and Hrp1."
J.Mol.Biol., 401, 334-349.
doi: 10.1016/j.jmb.2010.06.032.
|
Interdomain rrm packing contributes to RNA recognition
in the rna15, hrp1, anchor RNA 3' processing ternary
complex . SNAP
output
|
2kmj
|
RNA-peptide |
NMR |
Ferner J, Suhartono M, Breitung S, Jonker HRA, Hennig
M, Wohnert J, Gobel M, Schwalbe H |
(2009) "Structures
of HIV TAR RNA-ligand complexes reveal higher binding
stoichiometries." Chembiochem,
10, 1490-1494. doi: 10.1002/cbic.200900220.
|
High resolution NMR solution structure of a complex of
hiv-2 tar RNA and a synthetic tripeptide in a 1:2
stoichiometry . SNAP
output
|
2kx5
|
RNA binding protein-RNA |
NMR |
Davidson A, Patora-Komisarska K, Robinson JA, Varani
G |
(2011) "Essential
structural requirements for specific recognition of HIV
TAR RNA by peptide mimetics of Tat protein."
Nucleic Acids Res., 39,
248-256. doi: 10.1093/nar/gkq713.
|
Recognition of hiv tar RNA by peptide mimetic of tat
protein . SNAP
output
|
2kxn
|
RNA binding protein-RNA |
NMR |
Clery A, Jayne S, Benderska N, Dominguez C, Stamm S,
Allain FH |
(2011) "Molecular
basis of purine-rich RNA recognition by the human
SR-like protein Tra2-beta1."
Nat.Struct.Mol.Biol., 18,
443-450. doi: 10.1038/nsmb.2001.
|
NMR structure of human tra2beta1 rrm in complex with
aagaac RNA . SNAP
output
|
2l2k
|
hydrolase-RNA |
NMR |
Stefl R, Oberstrass FC, Hood JL, Jourdan M,
Zimmermann M, Skrisovska L, Maris C, Peng L, Hofr C,
Emeson RB, Allain FH |
(2010) "The
Solution Structure of the ADAR2 dsRBM-RNA Complex
Reveals a Sequence-Specific Readout of the Minor
Groove." Cell(Cambridge,Mass.),
143, 225-237. doi: 10.1016/j.cell.2010.09.026.
|
Solution NMR structure of the r-g stem loop RNA-adar2
dsrbm2 complex . SNAP
output
|
2l3c
|
hydrolase-RNA |
NMR |
Stefl R, Oberstrass FC, Hood JL, Jourdan M,
Zimmermann M, Skrisovska L, Maris C, Peng L, Hofr C,
Emeson RB, Allain FH |
(2010) "The
Solution Structure of the ADAR2 dsRBM-RNA Complex
Reveals a Sequence-Specific Readout of the Minor
Groove." Cell(Cambridge,Mass.),
143, 225-237. doi: 10.1016/j.cell.2010.09.026.
|
Solution structure of adar2 dsrbm1 bound to lsl RNA .
SNAP output
|
2l3j
|
hydrolase-RNA |
NMR |
Stefl R, Oberstrass FC, Hood JL, Jourdan M,
Zimmermann M, Skrisovska L, Maris C, Peng L, Hofr C,
Emeson RB, Allain FH |
(2010) "The
Solution Structure of the ADAR2 dsRBM-RNA Complex
Reveals a Sequence-Specific Readout of the Minor
Groove." Cell(Cambridge,Mass.),
143, 225-237. doi: 10.1016/j.cell.2010.09.026.
|
The solution structure of the adar2 dsrbm-RNA complex
reveals a sequence-specific read out of the minor
groove . SNAP output
|
2l41
|
RNA binding protein-RNA |
NMR |
Hobor F, Pergoli R, Kubicek K, Hrossova D, Bacikova
V, Zimmermann M, Pasulka J, Hofr C, Vanacova S, Stefl
R |
(2011) "Recognition
of transcription termination signal by the nuclear
polyadenylated RNA-binding (NAB) 3 protein."
J.Biol.Chem., 286, 3645-3657.
doi: 10.1074/jbc.M110.158774.
|
Nab3 rrm - ucuu complex . SNAP output
|
2l5d
|
RNA binding protein-RNA |
NMR |
Zeng L, Zhang Q, Yan K, Zhou MM |
(2011) "Structural
insights into piRNA recognition by the human PIWI-like
1 PAZ domain." Proteins,
79, 2004-2009. doi: 10.1002/prot.23003.
|
Solution structures of human piwi-like 1 paz domain
with ssrna (5'-pugaca) . SNAP output
|
2la5
|
RNA binding protein-RNA |
NMR |
Phan AT, Kuryavyi V, Darnell JC, Serganov A, Majumdar
A, Ilin S, Raslin T, Polonskaia A, Chen C, Clain D,
Darnell RB, Patel DJ |
(2011) "Structure-function
studies of FMRP RGG peptide recognition of an RNA
duplex-quadruplex junction."
Nat.Struct.Mol.Biol., 18,
796-804. doi: 10.1038/nsmb.2064.
|
RNA duplex-quadruplex junction complex with fmrp rgg
peptide . SNAP
output
|
2lbs
|
hydrolase-RNA |
NMR |
Wang Z, Hartman E, Roy K, Chanfreau G, Feigon J |
(2011) "Structure
of a Yeast RNase III dsRBD Complex with a Noncanonical
RNA Substrate Provides New Insights into Binding
Specificity of dsRBDs." Structure,
19, 999-1010. doi: 10.1016/j.str.2011.03.022.
|
Solution structure of double-stranded RNA binding
domain of s. cerevisiae rnase iii (rnt1p) in complex
with aagu tetraloop hairpin . SNAP output
|
2leb
|
RNA binding protein-RNA |
NMR |
Daubner GM, Clery A, Jayne S, Stevenin J, Allain
FH |
(2012) "A
syn-anti conformational difference allows SRSF2 to
recognize guanines and cytosines equally well."
Embo J., 31, 162-174. doi:
10.1038/emboj.2011.367.
|
Solution structure of human srsf2 (sc35) rrm in complex
with 5'-uccagu-3' . SNAP
output
|
2lec
|
RNA binding protein-RNA |
NMR |
Daubner GM, Clery A, Jayne S, Stevenin J, Allain
FH |
(2012) "A
syn-anti conformational difference allows SRSF2 to
recognize guanines and cytosines equally well."
Embo J., 31, 162-174. doi:
10.1038/emboj.2011.367.
|
Solution structure of human srsf2 (sc35) rrm in complex
with 5'-uggagu-3' . SNAP
output
|
2li8
|
transcription-RNA |
NMR |
Loughlin FE, Gebert LF, Towbin H, Brunschweiger A,
Hall J, Allain FH |
(2011) "Structural
basis of pre-let-7 miRNA recognition by the zinc
knuckles of pluripotency factor Lin28."
Nat.Struct.Mol.Biol., 19,
84-89. doi: 10.1038/nsmb.2202.
|
The solution structure of the lin28-znf domains bound
to aggagau of pre-let-7 mirna . SNAP output
|
2lup
|
RNA binding protein-RNA |
NMR |
Wang Z, Hartman E, Roy K, Chanfreau G, Feigon J |
(2011) "Structure
of a yeast RNase III dsRBD complex with a noncanonical
RNA substrate provides new insights into binding
specificity of dsRBDs." Structure,
19, 999-1010. doi: 10.1016/j.str.2011.03.022.
|
Rdc refined solution structure of double-stranded RNA
binding domain of s. cerevisiae rnase iii (rnt1p) in
complex with the terminal RNA hairpin of snr47
precursor . SNAP
output
|
2m8d
|
RNA binding protein-RNA |
NMR |
Clery A, Sinha R, Anczukow O, Corrionero A, Moursy A,
Daubner GM, Valcarcel J, Krainer AR, Allain FH |
(2013) "Isolated
pseudo-RNA-recognition motifs of SR proteins can
regulate splicing using a noncanonical mode of RNA
recognition." Proc.Natl.Acad.Sci.USA,
110, E2802-E2811. doi: 10.1073/pnas.1303445110.
|
Structure of srsf1 rrm2 in complex with the RNA
5'-ugaaggac-3' . SNAP
output
|
2mb0
|
splicing-RNA |
NMR |
Moursy A, Allain FH, Clery A |
(2014) "Characterization
of the RNA recognition mode of hnRNP G extends its role
in SMN2 splicing regulation." Nucleic Acids
Res., 42, 6659-6672. doi:
10.1093/nar/gku244.
|
Solution structure of hnrnp g rrm in complex with the
RNA 5'-aucaaa-3' . SNAP
output
|
2mf0
|
RNA binding protein-RNA |
NMR |
Duss O, Michel E, Yulikov M, Schubert M, Jeschke G,
Allain FH |
(2014) "Structural
basis of the non-coding RNA RsmZ acting as a protein
sponge." Nature, 509,
588-592. doi: 10.1038/nature13271.
|
Structural basis of the non-coding RNA rsmz acting as
protein sponge: conformer l of rsmz(1-72)-rsme(dimer)
1to3 complex . SNAP
output
|
2mf1
|
RNA binding protein-RNA |
NMR |
Duss O, Michel E, Yulikov M, Schubert M, Jeschke G,
Allain FH |
(2014) "Structural
basis of the non-coding RNA RsmZ acting as a protein
sponge." Nature, 509,
588-592. doi: 10.1038/nature13271.
|
Structural basis of the non-coding RNA rsmz acting as
protein sponge: conformer r of rsmz(1-72)-rsme(dimer)
1to3 complex . SNAP
output
|
2mfc
|
translation-RNA |
NMR |
Duss O, Michel E, Diarra Dit Konte N, Schubert M,
Allain FH |
(2014) "Molecular
basis for the wide range of affinity found in Csr/Rsm
protein-RNA recognition." Nucleic Acids
Res., 42, 5332-5346. doi:
10.1093/nar/gku141.
|
Csr-rsm protein-RNA recognition - a molecular affinity
ruler: rsmz(sl1)-rsme(dimer) 2:1 complex . SNAP output
|
2mfe
|
translation-RNA |
NMR |
Duss O, Michel E, Diarra Dit Konte N, Schubert M,
Allain FH |
(2014) "Molecular
basis for the wide range of affinity found in Csr/Rsm
protein-RNA recognition." Nucleic Acids
Res., 42, 5332-5346. doi:
10.1093/nar/gku141.
|
Csr-rsm protein-RNA recognition - a molecular affinity
ruler: rsmz(sl2)-rsme(dimer) 2:1 complex . SNAP output
|
2mff
|
translation-RNA |
NMR |
Duss O, Michel E, Diarra Dit Konte N, Schubert M,
Allain FH |
(2014) "Molecular
basis for the wide range of affinity found in Csr/Rsm
protein-RNA recognition." Nucleic Acids
Res., 42, 5332-5346. doi:
10.1093/nar/gku141.
|
Csr-rsm protein-RNA recognition - a molecular affinity
ruler: rsmz(sl3)-rsme(dimer) 2:1 complex . SNAP output
|
2mfg
|
translation-RNA |
NMR |
Duss O, Michel E, Diarra Dit Konte N, Schubert M,
Allain FH |
(2014) "Molecular
basis for the wide range of affinity found in Csr/Rsm
protein-RNA recognition." Nucleic Acids
Res., 42, 5332-5346. doi:
10.1093/nar/gku141.
|
Csr-rsm protein-RNA recognition - a molecular affinity
ruler: rsmz(sl4)-rsme(dimer) 2:1 complex . SNAP output
|
2mfh
|
translation-RNA |
NMR |
Duss O, Michel E, Diarra Dit Konte N, Schubert M,
Allain FH |
(2014) "Molecular
basis for the wide range of affinity found in Csr/Rsm
protein-RNA recognition." Nucleic Acids
Res., 42, 5332-5346. doi:
10.1093/nar/gku141.
|
Csr-rsm protein-RNA recognition - a molecular affinity
ruler: rsmz(36-44)-rsme(dimer) 2:1 complex . SNAP output
|
2mgz
|
RNA binding protein-RNA |
NMR |
Kuwasako K, Takahashi M, Unzai S, Tsuda K, Yoshikawa
S, He F, Kobayashi N, Guntert P, Shirouzu M, Ito T,
Tanaka A, Yokoyama S, Hagiwara M, Kuroyanagi H, Muto
Y |
(2014) "RBFOX
and SUP-12 sandwich a G base to cooperatively regulate
tissue-specific splicing."
Nat.Struct.Mol.Biol., 21,
778-786. doi: 10.1038/nsmb.2870.
|
Solution structure of rbfox family asd-1 rrm and sup-12
rrm in ternary complex with RNA . SNAP output
|
2mjh
|
RNA binding protein |
NMR |
Daubner GM, Brummer A, Tocchini C, Gerhardy S, Ciosk
R, Zavolan M, Allain FH |
(2014) "Structural
and functional implications of the QUA2 domain on RNA
recognition by GLD-1." Nucleic Acids Res.,
42, 8092-8105. doi: 10.1093/nar/gku445.
|
Solution structure of the gld-1 RNA-binding domain in
complex with RNA . SNAP
output
|
2mki
|
translation regulator-RNA |
NMR |
Afroz T, Skrisovska L, Belloc E, Guillen-Boixet J,
Mendez R, Allain FH-T |
(2014) "A fly
trap mechanism provides sequence-specific RNA
recognition by CPEB proteins." Genes Dev.,
28, 1498-1514. doi: 10.1101/gad.241133.114.
|
Solution structure of tandem rrm domains of cytoplasmic
polyadenylation element binding protein 4 (cpeb4) in
complex with RNA . SNAP
output
|
2mkk
|
translation regulator-RNA |
NMR |
Afroz T, Skrisovska L, Belloc E, Guillen-Boixet J,
Mendez R, Allain FH-T |
(2014) "A fly
trap mechanism provides sequence-specific RNA
recognition by CPEB proteins." Genes Dev.,
28, 1498-1514. doi: 10.1101/gad.241133.114.
|
Structural model of tandem rrm domains of cytoplasmic
polyadenylation element binding protein 1 (cpeb1) in
complex with RNA . SNAP
output
|
2mkn
|
RNA binding protein-RNA |
NMR |
Burge RG, Martinez-Yamout MA, Dyson HJ, Wright
PE |
(2014) "Structural
Characterization of Interactions between the
Double-Stranded RNA-Binding Zinc Finger Protein JAZ and
Nucleic Acids." Biochemistry,
53, 1495-1510. doi: 10.1021/bi401675h.
|
Structural characterization of interactions between the
double-stranded RNA-binding zinc finger protein jaz and
dsrna . SNAP output
|
2mqo
|
RNA binding protein-RNA |
NMR |
Blatter M, Allain F |
"Structural Investigation of hnRNP L bound to
RNA." |
Structural investigation of hnrnp l bound to RNA .
SNAP output
|
2mqp
|
RNA binding protein-RNA |
NMR |
Blatter M, Allain F |
"Structural Investigation of hnRNP L bound to
RNA." |
Structural investigation of hnrnp l bound to RNA .
SNAP output
|
2mqq
|
RNA binding protein-RNA |
NMR |
Blatter M, Allain F |
"Structural Investigation of hnRNP L bound to
RNA." |
Structural investigation of hnrnp l bound to RNA .
SNAP output
|
2mqv
|
viral protein-RNA |
NMR |
Miller SB, Yildiz FZ, Lo JA, Wang B, D'Souza VM |
(2014) "A
structure-based mechanism for tRNA and retroviral RNA
remodelling during primer annealing."
Nature, 515, 591-595. doi:
10.1038/nature13709.
|
Solution NMR structure of the u5-primer binding site
(u5-pbs) domain of murine leukemia virus RNA genome
bound to the retroviral nucleocapsid protein . SNAP output
|
2ms0
|
viral protein-RNA |
NMR |
Miller SB, Yildiz FZ, Lo JA, Wang B, D'Souza VM |
(2014) "A
structure-based mechanism for tRNA and retroviral RNA
remodelling during primer annealing."
Nature, 515, 591-595. doi:
10.1038/nature13709.
|
Solution NMR structure pf trnapro:mlv-nucleocapsid
(1:2) complex . SNAP
output
|
2ms1
|
viral protein-RNA |
NMR |
Miller SB, Yildiz FZ, Lo JA, Wang B, D'Souza VM |
(2014) "A
structure-based mechanism for tRNA and retroviral RNA
remodelling during primer annealing."
Nature, 515, 591-595. doi:
10.1038/nature13709.
|
Solution NMR structure of trnapro:mlv nucleocapsid
protein (1:1) complex . SNAP output
|
2mtv
|
RNA binding protein-RNA |
NMR |
Theler D, Dominguez C, Blatter M, Boudet J, Allain
FH |
(2014) "Solution
structure of the YTH domain in complex with
N6-methyladenosine RNA: a reader of methylated
RNA." Nucleic Acids Res.,
42, 13911-13919. doi: 10.1093/nar/gku1116.
|
Solution structure of the yth domain of yt521-b in
complex with n6-methyladenosine containing RNA .
SNAP output
|
2mxy
|
RNA binding protein-RNA |
NMR |
Cienikova Z, Damberger FF, Hall J, Allain FH, Maris
C |
(2014) "Structural
and mechanistic insights into poly(uridine) tract
recognition by the hnRNP C RNA recognition motif."
J.Am.Chem.Soc., 136,
14536-14544. doi: 10.1021/ja507690d.
|
Solution structure of hnrnp c rrm in complex with
5'-auuuuuc-3' RNA . SNAP
output
|
2mz1
|
RNA binding protein-RNA |
NMR |
Cienikova Z, Damberger FF, Hall J, Allain FH, Maris
C |
(2014) "Structural
and mechanistic insights into poly(uridine) tract
recognition by the hnRNP C RNA recognition motif."
J.Am.Chem.Soc., 136,
14536-14544. doi: 10.1021/ja507690d.
|
Solution structure of hnrnp c rrm in complex with
5'-uuuuc-3' RNA . SNAP
output
|
2n3o
|
RNA binding protein-RNA |
NMR |
Maris C, Jayne SF, Damberger FF, Ravindranathan S,
Allain FH-T |
"C-terminal helix folding upon pyrimidine-rich
hairpin binding to PTB RRM1. Implications for PTB
function in Encephalomyocarditis virus IRES
activity." |
Structure of ptb rrm1(41-163) bound to an RNA stemloop
containing a structured loop derived from viral
internal ribosomal entry site RNA . SNAP output
|
2n7c
|
RNA binding protein-RNA |
NMR |
Ganguly AK, Verma G, Bhavesh NS |
(2019) "The
N-terminal RNA Recognition Motif of PfSR1 Confers
Semi-specificity for Pyrimidines during RNA
Recognition." J. Mol. Biol.,
431, 498-510. doi: 10.1016/j.jmb.2018.11.020.
|
Solution structure of plasmodium falciparum sr1-rrm1 in
complex with acauca RNA . SNAP output
|
2n82
|
RNA binding protein-RNA |
NMR |
Chen Y, Zubovic L, Yang F, Godin K, Pavelitz T,
Castellanos J, Macchi P, Varani G |
(2016) "Rbfox
proteins regulate microRNA biogenesis by
sequence-specific binding to their precursors and
target downstream Dicer." Nucleic Acids
Res., 44, 4381-4395. doi:
10.1093/nar/gkw177.
|
Solution structure of the complex of microrna 20b
pre-element with rbfox rrm . SNAP output
|
2n8l
|
RNA binding protein-RNA |
NMR |
Nicastro G, Candel AM, Ramos A, Hollingworth D |
"Zipcode-binding-protein-1 KH3KH4(DD) domains in
complex with the RNA target GCACACCC." |
Zipcode-binding-protein-1 kh3kh4(dd) domains in complex
with the kh3 RNA target . SNAP output
|
2n8m
|
RNA binding protein-RNA |
NMR |
Nicastro G, Ramos A, Candel A, Hollingworth D |
"Zipcode-binding-protein-1 KH3(DD)KH4 domains in
complex with the RNA target UCGGACU." |
Zipcode-binding-protein-1 kh3(dd)kh4 domains in complex
with the kh4 RNA target . SNAP output
|
2noq
|
ribosome |
cryo-EM (7.3 Å) |
Schuler M, Connell SR, Lescoute A, Giesebrecht J,
Dabrowski M, Schroeer B, Mielke T, Penczek PA, Westhof E,
Spahn CM |
(2006) "Structure
of the ribosome-bound cricket paralysis virus IRES
RNA." Nat.Struct.Mol.Biol.,
13, 1092-1096. doi: 10.1038/nsmb1177.
|
Structure of ribosome-bound cricket paralysis virus
ires RNA . SNAP
output
|
2nre
|
isomerase-RNA |
X-ray (4.0 Å) |
Hur S, Stroud RM |
(2007) "How U38,
39, and 40 of Many tRNAs Become the Targets for
Pseudouridylation by TruA." Mol.Cell,
26, 189-203. doi: 10.1016/j.molcel.2007.02.027.
|
Crystal structure of pseudoudirinde synthase trua in
complex with leucyl trna . SNAP output
|
2nue
|
hydrolase-RNA |
X-ray (2.9 Å) |
Gan J, Shaw G, Tropea JE, Waugh DS, Court DL, Ji
X |
(2007) "A
stepwise model for double-stranded RNA processing by
ribonuclease III." Mol.Microbiol.,
67, 143-154. doi: 10.1111/j.1365-2958.2007.06032.x.
|
Crystal structure of rnase iii from aquifex aeolicus
complexed with ds-RNA at 2.9-angstrom resolution .
SNAP output
|
2nuf
|
hydrolase-RNA |
X-ray (2.5 Å) |
Gan J, Shaw G, Tropea JE, Waugh DS, Court DL, Ji
X |
(2007) "A
stepwise model for double-stranded RNA processing by
ribonuclease III." Mol.Microbiol.,
67, 143-154. doi: 10.1111/j.1365-2958.2007.06032.x.
|
Crystal structure of rnase iii from aquifex aeolicus
complexed with ds-RNA at 2.5-angstrom resolution .
SNAP output
|
2nug
|
hydrolase-RNA |
X-ray (1.7 Å) |
Gan J, Shaw G, Tropea JE, Waugh DS, Court DL, Ji
X |
(2007) "A
stepwise model for double-stranded RNA processing by
ribonuclease III." Mol.Microbiol.,
67, 143-154. doi: 10.1111/j.1365-2958.2007.06032.x.
|
Crystal structure of rnase iii from aquifex aeolicus
complexed with ds-RNA at 1.7-angstrom resolution .
SNAP output
|
2nz4
|
structural protein-RNA |
X-ray (2.498 Å) |
Cochrane JC, Lipchock SV, Strobel SA |
(2007) "Structural
Investigation of the GlmS Ribozyme Bound to Its
Catalytic Cofactor." Chem.Biol.,
14, 97-105. doi: 10.1016/j.chembiol.2006.12.005.
|
Structural investigation of the glms ribozyme bound to
its catalytic cofactor . SNAP output
|
2ogm
|
ribosome |
X-ray (3.5 Å) |
Davidovich C, Bashan A, Auerbach-Nevo T, Yaggie RD,
Gontarek RR, Yonath A |
(2007) "Induced-fit
tightens pleuromutilins binding to ribosomes and remote
interactions enable their selectivity."
Proc.Natl.Acad.Sci.Usa, 104,
4291-4296. doi: 10.1073/pnas.0700041104.
|
The crystal structure of the large ribosomal subunit
from deinococcus radiodurans complexed with the
pleuromutilin derivative sb-571519 . SNAP output
|
2oih
|
structural protein-RNA |
X-ray (2.4 Å) |
Ke A, Ding F, Batchelor JD, Doudna JA |
(2007) "Structural
roles of monovalent cations in the HDV ribozyme."
Structure, 15, 281-287. doi:
10.1016/j.str.2007.01.017.
|
Hepatitis delta virus gemonic ribozyme precursor with
c75u mutation and bound to monovalent cation tl+ .
SNAP output
|
2oj3
|
structural protein-RNA |
X-ray (2.9 Å) |
Ke A, Ding F, Batchelor JD, Doudna JA |
(2007) "Structural
roles of monovalent cations in the HDV ribozyme."
Structure, 15, 281-287. doi:
10.1016/j.str.2007.01.017.
|
Hepatitis delta virus ribozyme precursor structure,
with c75u mutation, bound to tl+ and cobalt hexammine
(co(nh3)63+) . SNAP
output
|
2om3
|
virus |
cryo-EM (4.4 Å) |
Sachse C, Chen JZ, Coureux PD, Stroupe ME, Fandrich
M, Grigorieff N |
(2007) "High-resolution
electron microscopy of helical specimens: a fresh look
at tobacco mosaic virus." J.Mol.Biol.,
371, 812-835. doi: 10.1016/j.jmb.2007.05.088.
|
High-resolution cryo-EM structure of tobacco mosaic
virus . SNAP output
|
2om7
|
ribosome |
cryo-EM (7.3 Å) |
Connell SR, Takemoto C, Wilson DN, Wang H, Murayama
K, Terada T, Shirouzu M, Rost M, Schuler M, Giesebrecht
J, Dabrowski M, Mielke T, Fucini P, Yokoyama S, Spahn
CM |
(2007) "Structural
basis for interaction of the ribosome with the switch
regions of GTP-bound elongation factors."
Mol.Cell, 25, 751-764. doi:
10.1016/j.molcel.2007.01.027.
|
Structural basis for interaction of the ribosome with
the switch regions of gtp-bound elongation factors .
SNAP output
|
2otj
|
ribosome |
X-ray (2.9 Å) |
Schroeder SJ, Blaha G, Tirado-Rives J, Steitz TA,
Moore PB |
(2007) "The
Structures of Antibiotics Bound to the E Site Region of
the 50 S Ribosomal Subunit of Haloarcula marismortui:
13-Deoxytedanolide and Girodazole."
J.Mol.Biol., 367, 1471-1479.
doi: 10.1016/j.jmb.2007.01.081.
|
13-deoxytedanolide bound to the large subunit of
haloarcula marismortui . SNAP output
|
2otl
|
ribosome |
X-ray (2.7 Å) |
Schroeder SJ, Blaha G, Tirado-Rives J, Steitz TA,
Moore PB |
(2007) "The
Structures of Antibiotics Bound to the E Site Region of
the 50 S Ribosomal Subunit of Haloarcula marismortui:
13-Deoxytedanolide and Girodazole."
J.Mol.Biol., 367, 1471-1479.
doi: 10.1016/j.jmb.2007.01.081.
|
Girodazole bound to the large subunit of haloarcula
marismortui . SNAP
output
|
2ozb
|
RNA binding protein-RNA |
X-ray (2.6 Å) |
Liu S, Li P, Dybkov O, Nottrott S, Hartmuth K,
Luhrmann R, Carlomagno T, Wahl MC |
(2007) "Binding
of the human Prp31 Nop domain to a composite
RNA-protein platform in U4 snRNP."
Science, 316, 115-120. doi:
10.1126/science.1137924.
|
Structure of a human prp31-15.5k-u4 snrna complex .
SNAP output
|
2pjp
|
translation-RNA |
X-ray (2.3 Å) |
Soler N, Fourmy D, Yoshizawa S |
(2007) "Structural
insight into a molecular switch in tandem winged-helix
motifs from elongation factor SelB."
J.Mol.Biol., 370, 728-741.
doi: 10.1016/j.jmb.2007.05.001.
|
Structure of the mrna-binding domain of elongation
factor selb from e.coli in complex with secis RNA .
SNAP output
|
2ply
|
translation-RNA |
X-ray (2.6 Å) |
Soler N, Fourmy D, Yoshizawa S |
(2007) "Structural
insight into a molecular switch in tandem winged-helix
motifs from elongation factor SelB."
J.Mol.Biol., 370, 728-741.
doi: 10.1016/j.jmb.2007.05.001.
|
Structure of the mrna binding fragment of elongation
factor selb in complex with secis RNA. . SNAP output
|
2po1
|
hydrolase-hydrolase-RNA |
X-ray (1.94 Å) |
Navarro MVAS, Oliveira CC, Zanchin NI, Guimaraes
BG |
(2008) "Insights
into the mechanism of progressive RNA degradation by
the archaeal exosome." J.Biol.Chem.,
283, 14120-14131. doi: 10.1074/jbc.M801005200.
|
Crystal structure of the p. abyssi exosome rnase ph
ring complexed with a single stranded 10-mer poly(a)
RNA . SNAP output
|
2pxb
|
signaling protein-RNA |
X-ray (2.5 Å) |
Keel AY, Rambo RP, Batey RT, Kieft JS |
(2007) "A
General Strategy to Solve the Phase Problem in RNA
Crystallography." Structure,
15, 761-772. doi: 10.1016/j.str.2007.06.003.
|
Variant 2 of ribonucleoprotein core of the e. coli
signal recognition particle . SNAP output
|
2pxd
|
signaling protein-RNA |
X-ray (2.0 Å) |
Keel AY, Rambo RP, Batey RT, Kieft JS |
(2007) "A
General Strategy to Solve the Phase Problem in RNA
Crystallography." Structure,
15, 761-772. doi: 10.1016/j.str.2007.06.003.
|
Variant 1 of ribonucleoprotein core of the e. coli
signal recognition particle . SNAP output
|
2pxe
|
signaling protein-RNA |
X-ray (2.0 Å) |
Keel AY, Rambo RP, Batey RT, Kieft JS |
(2007) "A
General Strategy to Solve the Phase Problem in RNA
Crystallography." Structure,
15, 761-772. doi: 10.1016/j.str.2007.06.003.
|
Variant 4 of ribonucleoprotein core of the e. coli
signal recognition particle . SNAP output
|
2pxf
|
signaling protein-RNA |
X-ray (2.0 Å) |
Keel AY, Rambo RP, Batey RT, Kieft JS |
(2007) "A
General Strategy to Solve the Phase Problem in RNA
Crystallography." Structure,
15, 761-772. doi: 10.1016/j.str.2007.06.003.
|
Variant 5 of ribonucleoprotein core of the e. coli
signal recognition particle . SNAP output
|
2pxk
|
signaling protein-RNA |
X-ray (2.5 Å) |
Keel AY, Rambo RP, Batey RT, Kieft JS |
(2007) "A
General Strategy to Solve the Phase Problem in RNA
Crystallography." Structure,
15, 761-772. doi: 10.1016/j.str.2007.06.003.
|
Variant 8 of ribonucleoprotein core of the e. coli
signal recognition particle . SNAP output
|
2pxl
|
signaling protein-RNA |
X-ray (2.5 Å) |
Keel AY, Rambo RP, Batey RT, Kieft JS |
(2007) "A
General Strategy to Solve the Phase Problem in RNA
Crystallography." Structure,
15, 761-772. doi: 10.1016/j.str.2007.06.003.
|
Variant 9 of ribonucleoprotein core of the e. coli
signal recognition particle . SNAP output
|
2pxp
|
signaling protein-RNA |
X-ray (2.5 Å) |
Keel AY, Rambo RP, Batey RT, Kieft JS |
(2007) "A
General Strategy to Solve the Phase Problem in RNA
Crystallography." Structure,
15, 761-772. doi: 10.1016/j.str.2007.06.003.
|
Variant 13 of ribonucleoprotein core of the e. coli
signal recognition particle . SNAP output
|
2pxq
|
signaling protein-RNA |
X-ray (2.5 Å) |
Keel AY, Rambo RP, Batey RT, Kieft JS |
(2007) "A
General Strategy to Solve the Phase Problem in RNA
Crystallography." Structure,
15, 761-772. doi: 10.1016/j.str.2007.06.003.
|
Variant 14 of ribonucleoprotein core of the e. coli
signal recognition particle . SNAP output
|
2pxt
|
signaling protein-RNA |
X-ray (2.5 Å) |
Keel AY, Rambo RP, Batey RT, Kieft JS |
(2007) "A
General Strategy to Solve the Phase Problem in RNA
Crystallography." Structure,
15, 761-772. doi: 10.1016/j.str.2007.06.003.
|
Variant 15 of ribonucleoprotein core of the e. coli
signal recognition particle . SNAP output
|
2pxu
|
signaling protein-RNA |
X-ray (2.5 Å) |
Keel AY, Rambo RP, Batey RT, Kieft JS |
(2007) "A
General Strategy to Solve the Phase Problem in RNA
Crystallography." Structure,
15, 761-772. doi: 10.1016/j.str.2007.06.003.
|
Variant 16 of ribonucleoprotein core of the e. coli
signal recognition particle . SNAP output
|
2pxv
|
signaling protein-RNA |
X-ray (2.0 Å) |
Keel AY, Rambo RP, Batey RT, Kieft JS |
(2007) "A
General Strategy to Solve the Phase Problem in RNA
Crystallography." Structure,
15, 761-772. doi: 10.1016/j.str.2007.06.003.
|
Variant 6 of ribonucleoprotein core of the e. coli
signal recognition particle . SNAP output
|
2py9
|
RNA and DNA binding protein-RNA |
X-ray (2.56 Å) |
Du Z, Lee JK, Fenn S, Tjhen R, Stroud RM, James
TL |
(2007) "X-ray
crystallographic and NMR studies of protein-protein and
protein-nucleic acid interactions involving the KH
domains from human poly(C)-binding protein-2."
Rna, 13, 1043-1051. doi:
10.1261/rna.410107.
|
Protein-RNA interaction involving kh1 domain from human
poly(c)-binding protein-2 . SNAP output
|
2q66
|
transferase-RNA |
X-ray (1.8 Å) |
Balbo PB, Bohm A |
(2007) "Mechanism
of poly(A) polymerase: structure of the
enzyme-MgATP-RNA ternary complex and kinetic
analysis." Structure, 15,
1117-1131. doi: 10.1016/j.str.2007.07.010.
|
Structure of yeast poly(a) polymerase with atp and
oligo(a) . SNAP
output
|
2qa4
|
ribosome |
X-ray (3.0 Å) |
Kavran JM, Steitz TA |
(2007) "Structure
of the base of the L7/L12 stalk of the Haloarcula
marismortui large ribosomal subunit: Analysis of L11
movements." J.Mol.Biol.,
371, 1047-1059. doi: 10.1016/j.jmb.2007.05.091.
|
A more complete structure of the the l7-l12 stalk of
the haloarcula marismortui 50s large ribosomal subunit
. SNAP output
|
2qex
|
ribosome |
X-ray (2.9 Å) |
Schroeder SJ, Blaha G, Moore PB |
(2007) "Negamycin
binds to the wall of the nascent chain exit tunnel of
the 50S ribosomal subunit." Antimicrob.Agents
Chemother., 51, 4462-4465. doi:
10.1128/AAC.00455-07.
|
Negamycin binds to the wall of the nascent chain exit
tunnel of the 50s ribosomal subunit . SNAP output
|
2qqp
|
virus |
X-ray (3.8 Å) |
Speir JA, Taylor DJ, Natarajan P, Pringle FM, Ball
LA, Johnson JE |
(2010) "Evolution
in action: N and C termini of subunits in related T = 4
viruses exchange roles as molecular switches."
Structure, 18, 700-709. doi:
10.1016/j.str.2010.03.010.
|
Crystal structure of authentic providence virus .
SNAP output
|
2qux
|
structural protein-RNA |
X-ray (2.44 Å) |
Chao JA, Patskovsky Y, Almo SC, Singer RH |
(2008) "Structural
basis for the coevolution of a viral RNA-protein
complex." Nat.Struct.Mol.Biol.,
15, 103-105. doi: 10.1038/nsmb1327.
|
Pp7 coat protein dimer in complex with RNA hairpin .
SNAP output
|
2r7r
|
transferase-RNA |
X-ray (2.6 Å) |
Lu X, McDonald SM, Tortorici MA, Tao YJ, Vasquez-Del
Carpio R, Nibert ML, Patton JT, Harrison SC |
(2008) "Mechanism
for coordinated RNA packaging and genome replication by
rotavirus polymerase VP1." Structure,
16, 1678-1688. doi: 10.1016/j.str.2008.09.006.
|
Crystal structure of rotavirus sa11 vp1-RNA (ugugacc)
complex . SNAP
output
|
2r7s
|
transferase-RNA |
X-ray (3.24 Å) |
Lu X, McDonald SM, Tortorici MA, Tao YJ, Vasquez-Del
Carpio R, Nibert ML, Patton JT, Harrison SC |
(2008) "Mechanism
for coordinated RNA packaging and genome replication by
rotavirus polymerase VP1." Structure,
16, 1678-1688. doi: 10.1016/j.str.2008.09.006.
|
Crystal structure of rotavirus sa11 vp1 - RNA (ugugcc)
complex . SNAP
output
|
2r7t
|
transferase-RNA |
X-ray (3.0 Å) |
Lu X, McDonald SM, Tortorici MA, Tao YJ, Vasquez-Del
Carpio R, Nibert ML, Patton JT, Harrison SC |
(2008) "Mechanism
for coordinated RNA packaging and genome replication by
rotavirus polymerase VP1." Structure,
16, 1678-1688. doi: 10.1016/j.str.2008.09.006.
|
Crystal structure of rotavirus sa11 vp1-RNA (ugugaacc)
complex . SNAP
output
|
2r7u
|
transferase-RNA |
X-ray (3.1 Å) |
Lu X, McDonald SM, Tortorici MA, Tao YJ, Vasquez-Del
Carpio R, Nibert ML, Patton JT, Harrison SC |
(2008) "Mechanism
for coordinated RNA packaging and genome replication by
rotavirus polymerase VP1." Structure,
16, 1678-1688. doi: 10.1016/j.str.2008.09.006.
|
Crystal structure of rotavirus sa11 vp1-RNA (aaaagcc)
complex . SNAP
output
|
2r7v
|
transferase-RNA |
X-ray (2.8 Å) |
Lu X, McDonald SM, Tortorici MA, Tao YJ, Vasquez-Del
Carpio R, Nibert ML, Patton JT, Harrison SC |
(2008) "Mechanism
for coordinated RNA packaging and genome replication by
rotavirus polymerase VP1." Structure,
16, 1678-1688. doi: 10.1016/j.str.2008.09.006.
|
Crystal structure of rotavirus sa11 vp1-RNA (ggcuuu)
complex . SNAP
output
|
2r7w
|
transferase-RNA |
X-ray (2.6 Å) |
Lu X, McDonald SM, Tortorici MA, Tao YJ, Vasquez-Del
Carpio R, Nibert ML, Patton JT, Harrison SC |
(2008) "Mechanism
for coordinated RNA packaging and genome replication by
rotavirus polymerase VP1." Structure,
16, 1678-1688. doi: 10.1016/j.str.2008.09.006.
|
Crystal structure of rotavirus sa11 vp1-RNA
(ugugacc)-mrna 5'-cap (m7gpppg) complex . SNAP output
|
2r7x
|
transferase-RNA |
X-ray (2.8 Å) |
Lu X, McDonald SM, Tortorici MA, Tao YJ, Vasquez-Del
Carpio R, Nibert ML, Patton JT, Harrison SC |
(2008) "Mechanism
for coordinated RNA packaging and genome replication by
rotavirus polymerase VP1." Structure,
16, 1678-1688. doi: 10.1016/j.str.2008.09.006.
|
Crystal structure of rotavirus sa11 vp1-RNA
(ugugacc)-gtp complex . SNAP output
|
2r8s
|
immune system-RNA |
X-ray (1.95 Å) |
Ye JD, Tereshko V, Frederiksen JK, Koide A, Fellouse
FA, Sidhu SS, Koide S, Kossiakoff AA, Piccirilli JA |
(2008) "Synthetic
antibodies for specific recognition and crystallization
of structured RNA."
Proc.Natl.Acad.Sci.Usa, 105,
82-87. doi: 10.1073/pnas.0709082105.
|
High resolution structure of a specific synthetic fab
bound to p4-p6 RNA ribozyme domain . SNAP output
|
2r92
|
transferase-RNA |
X-ray (3.8 Å) |
Lehmann E, Brueckner F, Cramer P |
(2007) "Molecular
basis of RNA-dependent RNA polymerase II activity."
Nature, 450, 445-449. doi:
10.1038/nature06290.
|
Elongation complex of RNA polymerase ii with artificial
rdrp scaffold . SNAP
output
|
2r93
|
transferase-RNA |
X-ray (4.0 Å) |
Lehmann E, Brueckner F, Cramer P |
(2007) "Molecular
basis of RNA-dependent RNA polymerase II activity."
Nature, 450, 445-449. doi:
10.1038/nature06290.
|
Elongation complex of RNA polymerase ii with a
hepatitis delta virus-derived RNA stem loop . SNAP output
|
2rd2
|
ligase-RNA |
X-ray (2.6 Å) |
Bullock TL, Rodriguez-Hernandez A, Corigliano EM,
Perona JJ |
(2008) "A
rationally engineered misacylating aminoacyl-tRNA
synthetase." Proc.Natl.Acad.Sci.Usa,
105, 7428-7433. doi: 10.1073/pnas.0711812105.
|
Glutaminyl-trna synthetase mutant c229r with bound
analog 5'-o-[n-(l-glutaminyl)-sulfamoyl]adenosine .
SNAP output
|
2re8
|
ligase-RNA |
X-ray (2.6 Å) |
Bullock TL, Rodriguez-Hernandez A, Corigliano EM,
Perona JJ |
(2008) "A
rationally engineered misacylating aminoacyl-tRNA
synthetase." Proc.Natl.Acad.Sci.Usa,
105, 7428-7433. doi: 10.1073/pnas.0711812105.
|
Glutaminyl-trna synthetase mutant c229r with bound
analog 5'-o-[n-(l-glutamyl)-sulfamoyl]adenosine .
SNAP output
|
2rfk
|
isomerase-RNA |
X-ray (2.87 Å) |
Liang B, Xue S, Terns RM, Terns MP, Li H |
(2007) "Substrate
RNA positioning in the archaeal H/ACA ribonucleoprotein
complex." Nat.Struct.Mol.Biol.,
14, 1189-1195. doi: 10.1038/nsmb1336.
|
Substrate RNA positioning in the archaeal h-aca
ribonucleoprotein complex . SNAP output
|
2rkj
|
ligase-RNA |
X-ray (4.5 Å) |
Paukstelis PJ, Chen JH, Chase E, Lambowitz AM, Golden
BL |
(2008) "Structure
of a tyrosyl-tRNA synthetase splicing factor bound to a
group I intron RNA." Nature,
451, 94-97. doi: 10.1038/nature06413.
|
Cocrystal structure of a tyrosyl-trna synthetase
splicing factor with a group i intron RNA . SNAP output
|
2rqc
|
transcription-RNA |
NMR |
Tsuda K, Kuwasako K, Takahashi M, Someya T, Inoue M,
Terada T, Kobayashi N, Shirouzu M, Kigawa T, Tanaka A,
Sugano S, Guntert P, Muto Y, Yokoyama S |
(2009) "Structural
basis for the sequence-specific RNA-recognition
mechanism of human CUG-BP1 RRM3." Nucleic Acids
Res., 37, 5151-5166. doi:
10.1093/nar/gkp546.
|
Solution structure of RNA-binding domain 3 of cugbp1 in
complex with RNA (ug)3 . SNAP output
|
2rra
|
RNA binding protein-RNA |
NMR |
Tsuda K, Someya T, Kuwasako K, Takahashi M, He F,
Unzai S, Inoue M, Harada T, Watanabe S, Terada T,
Kobayashi N, Shirouzu M, Kigawa T, Tanaka A, Sugano S,
Guntert P, Yokoyama S, Muto Y |
(2011) "Structural
basis for the dual RNA-recognition modes of human
Tra2-beta RRM." Nucleic Acids Res.,
39, 1538-1553. doi: 10.1093/nar/gkq854.
|
Solution structure of RNA binding domain in human tra2
beta protein in complex with RNA (gaagaa) . SNAP output
|
2rs2
|
RNA binding protein-RNA |
NMR |
Ohyama T, Nagata T, Tsuda K, Kobayashi N, Imai T,
Okano H, Yamazaki T, Katahira M |
(2011) "Structure
of Musashi1 in a complex with target RNA: the role of
aromatic stacking interactions." Nucleic Acids
Res. doi: 10.1093/nar/gkr1139.
|
1h, 13c, and 15n chemical shift assignments for
musashi1 rbd1:r(guagu) complex . SNAP output
|
2rsk
|
membrane protein-RNA |
NMR |
Mashima T, Nishikawa F, Kamatari YO, Fujiwara H,
Saimura M, Nagata T, Kodaki T, Nishikawa S, Kuwata K,
Katahira M |
(2013) "Anti-prion
activity of an RNA aptamer and its structural
basis." Nucleic Acids Res.,
41, 1355-1362. doi: 10.1093/nar/gks1132.
|
RNA aptamer against prion protein in complex with the
partial binding peptide . SNAP output
|
2ru3
|
RNA binding protein-RNA |
NMR |
Kuwasako K, Takahashi M, Unzai S, Tsuda K, Yoshikawa
S, He F, Kobayashi N, Guntert P, Shirouzu M, Ito T,
Tanaka A, Yokoyama S, Hagiwara M, Kuroyanagi H, Muto
Y |
(2014) "RBFOX
and SUP-12 sandwich a G base to cooperatively regulate
tissue-specific splicing."
Nat.Struct.Mol.Biol., 21,
778-786. doi: 10.1038/nsmb.2870.
|
Solution structure of c.elegans sup-12 rrm in complex
with RNA . SNAP
output
|
2ru7
|
membrane protein-RNA |
NMR |
Hayashi T, Oshima H, Mashima T, Nagata T, Katahira M,
Kinoshita M |
(2014) "Binding
of an RNA aptamer and a partial peptide of a prion
protein: crucial importance of water entropy in
molecular recognition." Nucleic Acids
Res., 42, 6861-6875. doi:
10.1093/nar/gku382.
|
Refined structure of RNA aptamer in complex with the
partial binding peptide of prion protein . SNAP output
|
2tmv
|
virus-RNA |
fiber diffraction |
Namba K, Pattanayek R, Stubbs G |
(1989) "Visualization
of protein-nucleic acid interactions in a virus.
Refined structure of intact tobacco mosaic virus at 2.9
A resolution by X-ray fiber diffraction."
J.Mol.Biol., 208, 307-325.
doi: 10.1016/0022-2836(89)90391-4.
|
Visualization of protein-nucleic acid interactions in a
virus. refined structure of intact tobacco mosaic virus
at 2.9 angstroms resolution by x-ray fiber diffraction
. SNAP output
|
2uu9
|
ribosome |
X-ray (3.1 Å) |
Weixlbaumer A, Murphy 4th FV, Dziergowska A,
Malkiewicz A, Vendeix FA, Agris PF, Ramakrishnan V |
(2007) "Mechanism
for expanding the decoding capacity of transfer RNAs by
modification of uridines." Nat. Struct. Mol.
Biol., 14, 498-502. doi: 10.1038/nsmb1242.
|
Structure of the thermus thermophilus 30s ribosomal
subunit complexed with a valine-asl with cmo5u in
position 34 bound to an mrna with a gug-codon in the
a-site and paromomycin. . SNAP output
|
2uua
|
ribosome |
X-ray (2.9 Å) |
Weixlbaumer A, Murphy 4th FV, Dziergowska A,
Malkiewicz A, Vendeix FA, Agris PF, Ramakrishnan V |
(2007) "Mechanism
for expanding the decoding capacity of transfer RNAs by
modification of uridines." Nat. Struct. Mol.
Biol., 14, 498-502. doi: 10.1038/nsmb1242.
|
Structure of the thermus thermophilus 30s ribosomal
subunit complexed with a valine-asl with cmo5u in
position 34 bound to an mrna with a guc-codon in the
a-site and paromomycin. . SNAP output
|
2uub
|
ribosome |
X-ray (2.8 Å) |
Weixlbaumer A, Murphy FV, Dziergowska A, Malkiewicz
A, Vendeix FAP, Agris PF, Ramakrishnan V |
(2007) "Mechanism
for Expanding the Decoding Capacity of Transfer Rnas by
Modification of Uridines."
Nat.Struct.Mol.Biol., 14,
498. doi: 10.1038/NSMB1242.
|
Structure of the thermus thermophilus 30s ribosomal
subunit complexed with a valine-asl with cmo5u in
position 34 bound to an mrna with a guu-codon in the
a-site and paromomycin. . SNAP output
|
2uuc
|
ribosome |
X-ray (3.1 Å) |
Weixlbaumer A, Murphy FV, Dziergowska A, Malkiewicz
A, Vendeix FA, Agris PF, Ramakrishnan V |
(2007) "Mechanism
for expanding the decoding capacity of transfer RNAs by
modification of uridines." Nat. Struct. Mol.
Biol., 14, 498-502. doi: 10.1038/nsmb1242.
|
Structure of the thermus thermophilus 30s ribosomal
subunit complexed with a valine-asl with cmo5u in
position 34 bound to an mrna with a gua-codon in the
a-site and paromomycin. . SNAP output
|
2uwm
|
translation |
X-ray (2.31 Å) |
Ose T, Soler N, Rasubala L, Kuroki K, Kohda D, Fourmy
D, Yoshizawa S, Maenaka K |
(2007) "Structural
Basis for Dynamic Interdomain Movement and RNA
Recognition of the Selenocysteine-Specific Elongation
Factor Selb." Structure,
15, 577. doi: 10.1016/J.STR.2007.03.007.
|
C-terminal domain(wh2-wh4) of elongation factor selb in
complex with secis RNA . SNAP output
|
2uxb
|
ribosome |
X-ray (3.1 Å) |
Dunham CM, Selmer M, Phelps SS, Kelley AC, Suzuki T,
Joseph S, Ramakrishnan V |
(2007) "Structures
of tRNAs with an expanded anticodon loop in the
decoding center of the 30S ribosomal subunit."
RNA, 13, 817-823. doi:
10.1261/rna.367307.
|
Crystal structure of an extended trna anticodon stem
loop in complex with its cognate mrna gggu in the
context of the thermus thermophilus 30s subunit. .
SNAP output
|
2uxc
|
ribosome |
X-ray (2.9 Å) |
Dunham CM, Selmer M, Phelps SS, Kelley AC, Suzuki T,
Joseph S, Ramakrishnan V |
(2007) "Structures
of Trnas with an Expanded Anticodon Loop in the
Decoding Center of the 30S Ribosomal Subunit."
RNA, 13, 817. doi: 10.1261/RNA.367307.
|
Crystal structure of an extended trna anticodon stem
loop in complex with its cognate mrna ucgu in the
context of the thermus thermophilus 30s subunit. .
SNAP output
|
2uxd
|
ribosome |
X-ray (3.2 Å) |
Dunham CM, Selmer M, Phelps SS, Kelley AC, Suzuki T,
Joseph S, Ramakrishnan V |
(2007) "Structures
of Trnas with an Expanded Anticodon Loop in the
Decoding Center of the 30S Ribosomal Subunit."
RNA, 13, 817. doi: 10.1261/RNA.367307.
|
Crystal structure of an extended trna anticodon stem
loop in complex with its cognate mrna cggg in the
context of the thermus thermophilus 30s subunit. .
SNAP output
|
2v0g
|
ligase |
X-ray (3.5 Å) |
Rock F, Mao W, Yaremchuk A, Tukalo M, Crepin T, Zhou
H, Zhang Y, Hernandez V, Akama T, Baker S, Plattner J,
Shapiro L, Martinis SA, Benkovic SJ, Cusack S, Alley
MRK |
(2007) "An
Antifungal Agent Inhibits an Aminoacyl-tRNA Synthetase
by Trapping tRNA in the Editing Site."
Science, 316, 1759. doi:
10.1126/SCIENCE.1142189.
|
Leucyl-trna synthetase from thermus thermophilus
complexed with a trna(leu) transcript with
5-fluoro-1,3-dihydro-1-hydroxy-2,1- benzoxaborole
(an2690) forming an adduct to the ribose of adenosine-
76 in the enzyme editing site. . SNAP output
|
2v3c
|
signaling protein |
X-ray (2.5 Å) |
Hainzl T, Huang S, Sauer-Eriksson AE |
(2007) "Interaction
of Signal-Recognition Particle 54 Gtpase Domain and
Signal-Recognition Particle RNA in the Free
Signal-Recognition Particle."
Proc.Natl.Acad.Sci.USA, 104,
14911. doi: 10.1073/PNAS.0702467104.
|
Crystal structure of the srp54-srp19-7s.s srp RNA
complex of m. jannaschii . SNAP output
|
2vnu
|
hydrolase-RNA |
X-ray (2.3 Å) |
Lorentzen E, Basquin J, Tomecki R, Dziembowski A,
Conti E |
(2008) "Structure
of the Active Subunit of the Yeast Exosome Core, Rrp44:
Diverse Modes of Substrate Recruitment in the Rnase II
Nuclease Family." Mol.Cell,
29, 717. doi: 10.1016/J.MOLCEL.2008.02.018.
|
Crystal structure of sc rrp44 . SNAP output
|
2vod
|
RNA binding protein |
X-ray (2.1 Å) |
Kotik-Kogan O, Valentine ER, Sanfelice D, Conte MR,
Curry S |
(2008) "Structural
Analysis Reveals Conformational Plasticity in the
Recognition of RNA 3' Ends by the Human La
Protein." Structure, 16,
852. doi: 10.1016/J.STR.2008.02.021.
|
Crystal structure of n-terminal domains of human la
protein complexed with RNA oligomer auauuuu . SNAP output
|
2von
|
RNA binding protein |
X-ray (2.1 Å) |
Kotik-Kogan O, Valentine ER, Sanfelice D, Conte MR,
Curry S |
(2008) "Structural
Analysis Reveals Conformational Plasticity in the
Recognition of RNA 3' Ends by the Human La
Protein." Structure, 16,
852. doi: 10.1016/J.STR.2008.02.021.
|
Crystal structure of n-terminal domains of human la
protein complexed with RNA oligomer auaauuu . SNAP output
|
2voo
|
RNA binding protein |
X-ray (1.8 Å) |
Kotik-Kogan O, Valentine ER, Sanfelice D, Conte MR,
Curry S |
(2008) "Structural
Analysis Reveals Conformational Plasticity in the
Recognition of RNA 3' Ends by the Human La
Protein." Structure, 16,
852. doi: 10.1016/J.STR.2008.02.021.
|
Crystal structure of n-terminal domains of human la
protein complexed with RNA oligomer uuuuuuuu . SNAP output
|
2vop
|
RNA binding protein |
X-ray (2.8 Å) |
Kotik-Kogan O, Valentine ER, Sanfelice D, Conte MR,
Curry S |
(2008) "Structural
Analysis Reveals Conformational Plasticity in the
Recognition of RNA 3' Ends by the Human La
Protein." Structure, 16,
852. doi: 10.1016/J.STR.2008.02.021.
|
Crystal structure of n-terminal domains of human la
protein complexed with RNA oligomer auuuu . SNAP output
|
2vpl
|
translation |
X-ray (2.3 Å) |
Tishchenko S, Kljashtorny V, Kostareva O, Nevskaya N,
Nikulin A, Gulak P, Piendl W, Garber M, Nikonov S |
(2008) "Domain
II of Thermus thermophilus ribosomal protein L1 hinders
recognition of its mRNA." J. Mol. Biol.,
383, 301-305. doi: 10.1016/j.jmb.2008.08.058.
|
The structure of the complex between the first domain
of l1 protein from thermus thermophilus and mrna from
methanococcus jannaschii . SNAP output
|
2vqe
|
ribosome |
X-ray (2.5 Å) |
Kurata S, Weixlbaumer A, Ohtsuki T, Shimazaki T, Wada
T, Kirino Y, Takai K, Watanabe K, Ramakrishnan V, Suzuki
T |
(2008) "Modified
Uridines with C5-Methylene Substituents at the First
Position of the tRNA Anticodon Stabilize U.G Wobble
Pairing During Decoding." J.Biol.Chem.,
283, 18801. doi: 10.1074/JBC.M800233200.
|
Modified uridines with c5-methylene substituents at the
first position of the trna anticodon stabilize u-g
wobble pairing during decoding . SNAP output
|
2vqf
|
ribosome |
X-ray (2.9 Å) |
Kurata S, Weixlbaumer A, Ohtsuki T, Shimazaki T, Wada
T, Kirino Y, Takai K, Watanabe K, Ramakrishnan V, Suzuki
T |
(2008) "Modified
Uridines with C5-Methylene Substituents at the First
Position of the tRNA Anticodon Stabilize U.G Wobble
Pairing During Decoding." J.Biol.Chem.,
283, 18801. doi: 10.1074/JBC.M800233200.
|
Modified uridines with c5-methylene substituents at the
first position of the trna anticodon stabilize u-g
wobble pairing during decoding . SNAP output
|
2vrt
|
hydrolase |
X-ray (3.5 Å) |
Koslover DJ, Callaghan AJ, Marcaida MJ, Garman EF,
Martick M, Scott WG, Luisi BF |
(2008) "The
Crystal Structure of the Escherichia Coli Rnase E
Apoprotein and a Mechanism for RNA Degradation."
Structure, 16, 1238. doi:
10.1016/J.STR.2008.04.017.
|
Crystal structure of e. coli rnase e possessing m1 RNA
fragments - catalytic domain . SNAP output
|
2w2h
|
RNA binding protein |
X-ray (3.25 Å) |
Anand K, Schulte A, Vogel-Bachmayr K, Scheffzek K,
Geyer M |
(2008) "Structural
Insights Into the Cyclin T1-Tat-Tar RNA Transcription
Activation Complex from Eiav."
Nat.Struct.Mol.Biol., 15,
1287. doi: 10.1038/NSMB.1513.
|
Structural basis of transcription activation by the
cyclin t1-tat-tar RNA complex from eiav . SNAP output
|
2wj8
|
RNA binding protein-RNA |
X-ray (3.29 Å) |
Tawar RG, Duquerroy S, Vonrhein C, Varela PF,
Damier-Piolle L, Castagne N, Maclellan K, Bedouelle H,
Bricogne G, Bhella D, Eleouet J, Rey FA |
(2009) "Crystal
Structure of a Nucleocapsid-Like Nucleoprotein-RNA
Complex of Respiratory Syncytial Virus."
Science, 326, 1279. doi:
10.1126/SCIENCE.1177634.
|
Respiratory syncitial virus ribonucleoprotein .
SNAP output
|
2ww9
|
ribosome |
cryo-EM (8.6 Å) |
Becker T, Bhushan S, Jarasch A, Armache JP, Funes S,
Jossinet F, Gumbart J, Mielke T, Berninghausen O,
Schulten K, Westhof E, Gilmore R, Mandon E, Beckmann
R |
(2009) "Structure
of Monomeric Yeast and Mammalian Sec61 Complexes
Interacting with the Translating Ribosome."
Science, 326, 1369. doi:
10.1126/SCIENCE.1178535.
|
cryo-EM structure of the active yeast ssh1 complex
bound to the yeast 80s ribosome . SNAP output
|
2wwa
|
ribosome |
cryo-EM (8.9 Å) |
Becker T, Bhushan S, Jarasch A, Armache JP, Funes S,
Jossinet F, Gumbart J, Mielke T, Berninghausen O,
Schulten K, Westhof E, Gilmore R, Mandon E, Beckmann
R |
(2009) "Structure
of Monomeric Yeast and Mammalian Sec61 Complexes
Interacting with the Translating Ribosome."
Science, 326, 1369. doi:
10.1126/SCIENCE.1178535.
|
cryo-EM structure of idle yeast ssh1 complex bound to
the yeast 80s ribosome . SNAP output
|
2wwb
|
ribosome |
cryo-EM (6.48 Å) |
Becker T, Bhushan S, Jarasch A, Armache JP, Funes S,
Jossinet F, Gumbart J, Mielke T, Berninghausen O,
Schulten K, Westhof E, Gilmore R, Mandon E, Beckmann
R |
(2009) "Structure
of Monomeric Yeast and Mammalian Sec61 Complexes
Interacting with the Translating Ribosome."
Science, 326, 1369. doi:
10.1126/SCIENCE.1178535.
|
cryo-EM structure of the mammalian sec61 complex bound
to the actively translating wheat germ 80s ribosome .
SNAP output
|
2wyy
|
virus |
cryo-EM (10.6 Å) |
Ge P, Tsao J, Schein S, Green TJ, Luo M, Zhou ZH |
(2010) "Cryo-Em
Model of the Bullet-Shaped Vesicular Stomatitis
Virus." Science, 327,
689. doi: 10.1126/SCIENCE.1181766.
|
Cryoem model of the vesicular stomatitis virus .
SNAP output
|
2x1f
|
transcription-RNA |
X-ray (1.6 Å) |
Pancevac C, Goldstone DC, Ramos A, Taylor IA |
(2010) "Structure
of the RNA15 Rrm-RNA Complex Reveals the Molecular
Basis of Gu Specificity in Transcriptional 3-End
Processing Factors." Nucleic Acids Res.,
38, 3119. doi: 10.1093/NAR/GKQ002.
|
Structure of rna15 rrm with bound RNA (gu) . SNAP output
|
2x7n
|
ribosomal protein-RNA |
cryo-EM (11.8 Å) |
Gartmann M, Blau M, Armache J-P, Mielke T, Topf M,
Beckmann R |
(2010) "Mechanism
of Eif6-Mediated Inhibition of Ribosomal Subunit
Joining." J.Biol.Chem.,
285, 14848. doi: 10.1074/JBC.C109.096057.
|
Mechanism of eif6s anti-association activity . SNAP output
|
2xb2
|
hydrolase |
X-ray (3.4 Å) |
Buchwald G, Ebert J, Basquin C, Sauliere J,
Jayachandran U, Bono F, Le Hir H, Conti E |
(2010) "Insights
Into the Recruitment of the Nmd Machinery from the
Crystal Structure of a Core Ejc-Upf3B Complex."
Proc.Natl.Acad.Sci.USA, 107,
10050. doi: 10.1073/PNAS.1000993107.
|
Crystal structure of the core
mago-y14-eif4aiii-barentsz-upf3b assembly shows how the
ejc is bridged to the nmd machinery . SNAP output
|
2xbm
|
RNA binding protein |
X-ray (2.9 Å) |
Yap LJ, Luo DH, Chung KY, Lim SP, Bodenreider C,
Noble C, Shi PY, Lescar J |
(2010) "Crystal
Structure of the Dengue Virus Methyltransferase Bound
to a 5'-Capped Octameric RNA." Plos One,
5, 12836. doi: 10.1371/JOURNAL.PONE.0012836.
|
Crystal structure of the dengue virus methyltransferase
bound to a 5'- capped octameric RNA . SNAP output
|
2xc7
|
RNA binding protein |
NMR |
Mourao A, Varrot A, Mackereth CD, Cusack S, Sattler
M |
(2010) "Structure
and RNA Recognition by the Snrna and Snorna Transport
Factor Phax." RNA, 16,
1205. doi: 10.1261/RNA.2009910.
|
Solution structure of phax-rbd in complex with ssrna .
SNAP output
|
2xd0
|
toxin-RNA |
X-ray (3.0 Å) |
Blower TR, Pei XY, Short FL, Fineran PC, Humphreys
DP, Luisi BF, Salmond GP |
(2011) "A
processed noncoding RNA regulates an altruistic
bacterial antiviral system." Nat. Struct. Mol.
Biol., 18, 185-190. doi: 10.1038/nsmb.1981.
|
A processed non-coding RNA regulates a bacterial
antiviral system . SNAP
output
|
2xdb
|
toxin-RNA |
X-ray (2.55 Å) |
Blower TR, Pei XY, Short FL, Fineran PC, Humphreys
DP, Luisi BF, Salmond GPC |
(2011) "A
Processed Noncoding RNA Regulates an Altruistic
Bacterial Antiviral System."
Nat.Struct.Mol.Biol., 18,
185. doi: 10.1038/NSMB.1981.
|
A processed non-coding RNA regulates a bacterial
antiviral system . SNAP
output
|
2xdd
|
toxin-RNA |
X-ray (3.2 Å) |
Fineran PC, Blower TR, Foulds IJ, Humphreys DP,
Lilley KS, Salmond GPC |
(2009) "The
Phage Abortive Infection System, Toxin, Functions as a
Protein-RNA Toxin-Antitoxin Pair."
Proc.Natl.Acad.Sci.USA, 106,
894. doi: 10.1073/PNAS.0808832106.
|
A processed non-coding RNA regulates a bacterial
antiviral system . SNAP
output
|
2xea
|
virus |
cryo-EM (4.6 Å) |
Clare DK, Orlova EV |
(2010) "4.6 A
Cryo-Em Reconstruction of Tobacco Mosaic Virus from
Images Recorded at 300 Kev on a 4Kx4K Ccd Camera."
J.Struct.Biol., 171, 303.
doi: 10.1016/J.JSB.2010.06.011.
|
4.6 angstrom cryo-EM reconstruction of tobacco mosaic
virus from images recorded at 300 kev on a 4kx4k ccd
camera . SNAP output
|
2xfm
|
RNA-protein |
NMR |
Simon B, Kirkpatrick JP, Eckhardt S, Reuter M, Rocha
EA, Andrade-Navarro MA, Sehr P, Pillai RS, Carlomagno
T |
(2011) "Recognition
of 2'-O-Methylated 3'-End of Pirna by the Paz Domain of
a Piwi Protein." Structure,
19, 172. doi: 10.1016/J.STR.2010.11.015.
|
Complex structure of the miwi paz domain bound to
methylated single stranded RNA . SNAP output
|
2xgj
|
hydrolase-RNA |
X-ray (2.9 Å) |
Weir JR, Bonneau F, Hentschel J, Conti E |
(2010) "Structural
Analysis Reveals the Characteristic Features of Mtr4, a
Dexh Helicase Involved in Nuclear RNA Processing and
Surveillance." Proc.Natl.Acad.Sci.USA,
107, 12139. doi: 10.1073/PNAS.1004953107.
|
Structure of mtr4, a dexh helicase involved in nuclear
RNA processing and surveillance . SNAP output
|
2xkv
|
protein transport |
cryo-EM (13.5 Å) |
Estrozi LF, Boehringer D, Shan S-O, Ban N,
Schaffitzel C |
(2011) "Cryo-Em
Structure of the E. Coli Translating Ribosome in
Complex with Srp and its Receptor."
Nat.Struct.Mol.Biol., 18, 88.
doi: 10.1038/NSMB.1952.
|
Atomic model of the srp-ftsy early conformation .
SNAP output
|
2xpj
|
virus |
X-ray (3.4 Å) |
Sagurthi SR, Rajaram V, Savithri HS, Murthy MRN |
"Crystal Structure of Natural Bottom Component of
Phmv." |
Crystal structure of physalis mottle virus with intact
ordered RNA . SNAP
output
|
2xs2
|
RNA binding protein-RNA |
X-ray (1.35 Å) |
Jenkins HT, Malkova B, Edwards TA |
(2011) "Kinked
beta-strands mediate high-affinity recognition of mRNA
targets by the germ-cell regulator DAZL." Proc.
Natl. Acad. Sci. U.S.A., 108,
18266-18271. doi: 10.1073/pnas.1105211108.
|
Crystal structure of the rrm domain of mouse deleted in
azoospermia-like in complex with RNA, uuguucuu .
SNAP output
|
2xs5
|
RNA binding protein-RNA |
X-ray (1.6 Å) |
Jenkins HT, Edwards TA |
(2011) "Kinked
Beta-Strands Mediate High-Affinity Recognition of Mrna
Targets by the Germ-Cell Regulator Dazl."
Proc.Natl.Acad.Sci.USA, 108,
18266. doi: 10.1073/PNAS.1105211108.
|
Crystal structure of the rrm domain of mouse deleted in
azoospermia- like in complex with mvh RNA, uguuc .
SNAP output
|
2xs7
|
RNA binding protein-RNA |
X-ray (1.45 Å) |
Jenkins HT, Edwards TA |
(2011) "Kinked
Beta-Strands Mediate High-Affinity Recognition of Mrna
Targets by the Germ-Cell Regulator Dazl."
Proc.Natl.Acad.Sci.USA, 108,
18266. doi: 10.1073/PNAS.1105211108.
|
Crystal structure of the rrm domain of mouse deleted in
azoospermia- like in complex with sycp3 RNA, uuguuu .
SNAP output
|
2xxa
|
protein transport |
X-ray (3.94 Å) |
Ataide SF, Schmitz N, Shen K, Ke A, Shan S, Doudna
JA, Ban N |
(2011) "The
Crystal Structure of the Signal Recognition Particle in
Complex with its Receptor." Science,
331, 881. doi: 10.1126/SCIENCE.1196473.
|
The crystal structure of the signal recognition
particle (srp) in complex with its receptor(sr) .
SNAP output
|
2xzl
|
hydrolase-RNA |
X-ray (2.4 Å) |
Chakrabarti S, Jayachandran U, Bonneau F, Fiorini F,
Basquin C, Domcke S, Le Hir H, Conti E |
(2011) "Molecular
Mechanisms for the RNA-Dependent ATPase Activity of
Upf1 and its Regulation by Upf2."
Mol.Cell, 41, 693. doi:
10.1016/J.MOLCEL.2011.02.010.
|
Upf1-RNA complex . SNAP
output
|
2xzo
|
hydrolase-RNA |
X-ray (2.395 Å) |
Chakrabarti S, Jayachandran U, Bonneau F, Fiorini F,
Basquin C, Domcke S, Le Hir H, Conti E |
(2011) "Molecular
Mechanisms for the RNA-Dependent ATPase Activity of
Upf1 and its Regulation by Upf2."
Mol.Cell, 41, 693. doi:
10.1016/J.MOLCEL.2011.02.010.
|
Upf1 helicase - RNA complex . SNAP output
|
2y8w
|
hydrolase-RNA |
X-ray (1.8 Å) |
Sashital DG, Jinek M, Doudna JA |
(2011) "An
RNA-Induced Conformational Change Required for Crispr
RNA Cleavage by the Endoribonuclease Cse3."
Nat.Struct.Mol.Biol., 18,
680. doi: 10.1038/NSMB.2043.
|
Structure of crispr endoribonuclease cse3 bound to 20
nt RNA . SNAP output
|
2y8y
|
hydrolase-RNA |
X-ray (1.44 Å) |
Sashital DG, Jinek M, Doudna JA |
(2011) "An
RNA-Induced Conformational Change Required for Crispr
RNA Cleavage by the Endoribonuclease Cse3."
Nat.Struct.Mol.Biol., 18,
680. doi: 10.1038/NSMB.2043.
|
Structure b of crispr endoribonuclease cse3 bound to 19
nt RNA . SNAP output
|
2yh1
|
transcription |
NMR |
Mackereth CD, Madl T, Bonnal S, Simon B, Zanier K,
Gasch A, Rybin V, Valcarcel J, Sattler M |
(2011) "Multi-Domain
Conformational Selection Underlies Pre-Mrna Splicing
Regulation by U2Af." Nature,
475, 408. doi: 10.1038/NATURE10171.
|
Model of human u2af65 tandem rrm1 and rrm2 domains with
eight-site uridine binding . SNAP output
|
2yhm
|
viral protein-RNA |
X-ray (3.6 Å) |
El Omari K, Dhaliwal B, Ren J, Abrescia NGA, Lockyer
M, Powell KL, Hawkins AR, Stammers DK |
(2011) "Structures
of Respiratory Syncytial Virus Nucleocapsid Protein
from Two Crystal Forms: Details of Potential Packing
Interactions in the Native Helical Form." Acta
Crystallogr.,Sect.F, 67, 1179.
doi: 10.1107/S1744309111029228.
|
Structure of respiratory syncytial virus nucleocapsid
protein, p212121 crystal form . SNAP output
|
2yjy
|
RNA binding protein-RNA |
X-ray (2.598 Å) |
Dong S, Wang Y, Cassidy-Amstutz C, Lu G, Bigler R,
Jezyk MR, Li C, Hall TM, Wang Z |
(2011) "Specific
and Modular Binding Code for Cytosine Recognition in
Pumilio/Fbf (Puf) RNA-Binding Domains."
J.Biol.Chem., 286, 26732.
doi: 10.1074/JBC.M111.244889.
|
A specific and modular binding code for cytosine
recognition in puf domains . SNAP output
|
2ykg
|
hydrolase |
X-ray (2.5 Å) |
Luo D, Ding SC, Vela A, Kohlway A, Lindenbach BD,
Pyle AM |
(2011) "Structural
Insights Into RNA Recognition by Rig-I."
Cell(Cambridge,Mass.), 147,
409. doi: 10.1016/J.CELL.2011.09.023.
|
Structural insights into RNA recognition by rig-i .
SNAP output
|
2ykr
|
ribosome-hydrolase |
cryo-EM (9.8 Å) |
Guo Q, Yuan Y, Xu Y, Feng B, Liu L, Chen K, Sun M,
Yang Z, Lei J, Gao N |
(2011) "Structural
Basis for the Function of a Small Gtpase Rsga on the
30S Ribosomal Subunit Maturation Revealed by
Cryoelectron Microscopy."
Proc.Natl.Acad.Sci.USA, 108,
13100. doi: 10.1073/PNAS.1104645108.
|
30s ribosomal subunit with rsga bound in the presence
of gmppnp . SNAP
output
|
2zh1
|
transferase-RNA |
X-ray (2.8 Å) |
Toh Y, Numata T, Watanabe K, Takeshita D, Nureki O,
Tomita K |
(2008) "Molecular
basis for maintenance of fidelity during the CCA-adding
reaction by a CCA-adding enzyme." Embo J.,
27, 1944-1952. doi: 10.1038/emboj.2008.124.
|
Complex structure of afcca with trnaminida . SNAP output
|
2zh2
|
transferase-RNA |
X-ray (2.66 Å) |
Toh Y, Numata T, Watanabe K, Takeshita D, Nureki O,
Tomita K |
(2008) "Molecular
basis for maintenance of fidelity during the CCA-adding
reaction by a CCA-adding enzyme." Embo J.,
27, 1944-1952. doi: 10.1038/emboj.2008.124.
|
Complex structure of afcca with trnaminidac . SNAP output
|
2zh3
|
transferase-RNA |
X-ray (2.5 Å) |
Toh Y, Numata T, Watanabe K, Takeshita D, Nureki O,
Tomita K |
(2008) "Molecular
basis for maintenance of fidelity during the CCA-adding
reaction by a CCA-adding enzyme." Embo J.,
27, 1944-1952. doi: 10.1038/emboj.2008.124.
|
Complex structure of afcca with trnaminidca . SNAP output
|
2zh4
|
transferase-RNA |
X-ray (2.65 Å) |
Toh Y, Numata T, Watanabe K, Takeshita D, Nureki O,
Tomita K |
(2008) "Molecular
basis for maintenance of fidelity during the CCA-adding
reaction by a CCA-adding enzyme." Embo J.,
27, 1944-1952. doi: 10.1038/emboj.2008.124.
|
Complex structure of afcca with trnaminidcg . SNAP output
|
2zh5
|
transferase-RNA |
X-ray (2.6 Å) |
Toh Y, Numata T, Watanabe K, Takeshita D, Nureki O,
Tomita K |
(2008) "Molecular
basis for maintenance of fidelity during the CCA-adding
reaction by a CCA-adding enzyme." Embo J.,
27, 1944-1952. doi: 10.1038/emboj.2008.124.
|
Complex structure of afcca with trnaminidcu . SNAP output
|
2zh6
|
transferase-RNA |
X-ray (2.5 Å) |
Toh Y, Numata T, Watanabe K, Takeshita D, Nureki O,
Tomita K |
(2008) "Molecular
basis for maintenance of fidelity during the CCA-adding
reaction by a CCA-adding enzyme." Embo J.,
27, 1944-1952. doi: 10.1038/emboj.2008.124.
|
Complex structure of afcca with trnaminidcu and atp .
SNAP output
|
2zh7
|
transferase-RNA |
X-ray (3.0 Å) |
Toh Y, Numata T, Watanabe K, Takeshita D, Nureki O,
Tomita K |
(2008) "Molecular
basis for maintenance of fidelity during the CCA-adding
reaction by a CCA-adding enzyme." Embo J.,
27, 1944-1952. doi: 10.1038/emboj.2008.124.
|
Complex structure of afcca with trnaminidg . SNAP output
|
2zh8
|
transferase-RNA |
X-ray (2.65 Å) |
Toh Y, Numata T, Watanabe K, Takeshita D, Nureki O,
Tomita K |
(2008) "Molecular
basis for maintenance of fidelity during the CCA-adding
reaction by a CCA-adding enzyme." Embo J.,
27, 1944-1952. doi: 10.1038/emboj.2008.124.
|
Complex structure of afcca with trnaminidgc . SNAP output
|
2zh9
|
transferase-RNA |
X-ray (2.9 Å) |
Toh Y, Numata T, Watanabe K, Takeshita D, Nureki O,
Tomita K |
(2008) "Molecular
basis for maintenance of fidelity during the CCA-adding
reaction by a CCA-adding enzyme." Embo J.,
27, 1944-1952. doi: 10.1038/emboj.2008.124.
|
Complex structure of afcca with trnaminidu . SNAP output
|
2zha
|
transferase-RNA |
X-ray (2.95 Å) |
Toh Y, Numata T, Watanabe K, Takeshita D, Nureki O,
Tomita K |
(2008) "Molecular
basis for maintenance of fidelity during the CCA-adding
reaction by a CCA-adding enzyme." Embo J.,
27, 1944-1952. doi: 10.1038/emboj.2008.124.
|
Complex structure of afcca with trnaminidu and ctp .
SNAP output
|
2zhb
|
transferase-RNA |
X-ray (3.05 Å) |
Toh Y, Numata T, Watanabe K, Takeshita D, Nureki O,
Tomita K |
(2008) "Molecular
basis for maintenance of fidelity during the CCA-adding
reaction by a CCA-adding enzyme." Embo J.,
27, 1944-1952. doi: 10.1038/emboj.2008.124.
|
Complex structure of afcca with trnaminiduc . SNAP output
|
2zi0
|
gene regulation-RNA |
X-ray (2.82 Å) |
Chen H-Y, Yang J, Lin C, Yuan YA |
(2008) "Structural
basis for RNA-silencing suppression by Tomato aspermy
virus protein 2b." Embo Rep.,
9, 754-760. doi: 10.1038/embor.2008.118.
|
Crystal structure of tav2b-sirna complex . SNAP output
|
2zjp
|
ribosome-antibiotic |
X-ray (3.7 Å) |
Harms JM, Wilson DN, Schluenzen F, Connell SR,
Stachelhaus T, Zaborowska Z, Spahn CM, Fucini P |
(2008) "Translational
Regulation Via L11: Molecular Switches on the Ribosome
Turned on and Off by Thiostrepton and Micrococcin."
Mol.Cell, 30, 26. doi:
10.1016/J.MOLCEL.2008.01.009.
|
Thiopeptide antibiotic nosiheptide bound to the large
ribosomal subunit of deinococcus radiodurans . SNAP output
|
2zjq
|
ribosome |
X-ray (3.3 Å) |
Harms JM, Wilson DN, Schluenzen F, Connell SR,
Stachelhaus T, Zaborowska Z, Spahn CM, Fucini P |
(2008) "Translational
regulation via L11: molecular switches on the ribosome
turned on and off by thiostrepton and micrococcin."
Mol.Cell, 30, 26-38. doi:
10.1016/j.molcel.2008.01.009.
|
Interaction of l7 with l11 induced by microccocin
binding to the deinococcus radiodurans 50s subunit .
SNAP output
|
2zjr
|
ribosome |
X-ray (2.91 Å) |
Harms JM, Wilson DN, Schluenzen F, Connell SR,
Stachelhaus T, Zaborowska Z, Spahn CM, Fucini P |
(2008) "Translational
regulation via L11: molecular switches on the ribosome
turned on and off by thiostrepton and micrococcin."
Mol.Cell, 30, 26-38. doi:
10.1016/j.molcel.2008.01.009.
|
Refined native structure of the large ribosomal subunit
(50s) from deinococcus radiodurans . SNAP output
|
2zko
|
RNA binding protein-RNA |
X-ray (1.7 Å) |
Cheng A, Wong SM, Yuan YA |
(2009) "Structural
basis for dsRNA recognition by NS1 protein of influenza
A virus." Cell Res., 19,
187-195. doi: 10.1038/cr.2008.288.
|
Structural basis for dsrna recognition by ns1 protein
of human influenza virus a . SNAP output
|
2zm5
|
transferase-RNA |
X-ray (2.55 Å) |
Chimnaronk S, Forouhar F, Sakai J, Yao M, Tron CM,
Atta M, Fontecave M, Hunt JF, Tanaka I |
(2009) "Snapshots
of dynamics in synthesizing N(6)-isopentenyladenosine
at the tRNA anticodon." Biochemistry,
48, 5057-5065. doi: 10.1021/bi900337d.
|
Crystal structure of trna modification enzyme miaa in
the complex with trna(phe) . SNAP output
|
2zm6
|
ribosome |
X-ray (3.3 Å) |
Kaminishi T, Wang H, Kawazoe M, Ishii R,
Hanawa-Suetsugu K, Nomura M, Takemoto C, Shirouzu M,
Paola F, Yokoyama S |
"Crystal structure of the Thermus thermophilus 30S
ribosomal subunit." |
Crystal structure of the thermus thermophilus 30s
ribosomal subunit . SNAP
output
|
2zni
|
ligase-RNA |
X-ray (3.1 Å) |
Nozawa K, O'Donoghue P, Gundllapalli S, Araiso Y,
Ishitani R, Umehara T, Soll D, Nureki O |
(2009) "Pyrrolysyl-tRNA
synthetase-tRNA(Pyl) structure reveals the molecular
basis of orthogonality." Nature,
457, 1163-1167. doi: 10.1038/nature07611.
|
Crystal structure of pyrrolysyl-trna
synthetase-trna(pyl) complex from desulfitobacterium
hafniense . SNAP
output
|
2zue
|
ligase-RNA |
X-ray (2.0 Å) |
Konno M, Sumida T, Uchikawa E, Mori Y, Yanagisawa T,
Sekine S, Yokoyama S |
(2009) "Modeling
of tRNA-assisted mechanism of Arg activation based on a
structure of Arg-tRNA synthetase, tRNA, and an ATP
analog (ANP)." Febs J.,
276, 4763-4779. doi: 10.1111/j.1742-4658.2009.07178.x.
|
Crystal structure of pyrococcus horikoshii arginyl-trna
synthetase complexed with trna(arg) and an atp analog
(anp) . SNAP output
|
2zuf
|
ligase-RNA |
X-ray (2.3 Å) |
Konno M, Sumida T, Uchikawa E, Mori Y, Yanagisawa T,
Sekine S, Yokoyama S |
(2009) "Modeling
of tRNA-assisted mechanism of Arg activation based on a
structure of Arg-tRNA synthetase, tRNA, and an ATP
analog (ANP)." Febs J.,
276, 4763-4779. doi: 10.1111/j.1742-4658.2009.07178.x.
|
Crystal structure of pyrococcus horikoshii arginyl-trna
synthetase complexed with trna(arg) . SNAP output
|
2zxu
|
transferase-RNA |
X-ray (2.75 Å) |
Chimnaronk S, Forouhar F, Sakai J, Yao M, Tron CM,
Atta M, Fontecave M, Hunt JF, Tanaka I |
(2009) "Snapshots
of dynamics in synthesizing N(6)-isopentenyladenosine
at the tRNA anticodon." Biochemistry,
48, 5057-5065. doi: 10.1021/bi900337d.
|
Crystal structure of trna modification enzyme miaa in
the complex with trna(phe) and dmaspp . SNAP output
|
2zzm
|
transferase-RNA |
X-ray (2.65 Å) |
Goto-Ito S, Ito T, Kuratani M, Bessho Y, Yokoyama
S |
(2009) "Tertiary
structure checkpoint at anticodon loop modification in
tRNA functional maturation."
Nat.Struct.Mol.Biol., 16,
1109-1115. doi: 10.1038/nsmb.1653.
|
The complex structure of atrm5 and trnaleu . SNAP output
|
2zzn
|
transferase-RNA |
X-ray (2.95 Å) |
Goto-Ito S, Ito T, Kuratani M, Bessho Y, Yokoyama
S |
(2009) "Tertiary
structure checkpoint at anticodon loop modification in
tRNA functional maturation."
Nat.Struct.Mol.Biol., 16,
1109-1115. doi: 10.1038/nsmb.1653.
|
The complex structure of atrm5 and trnacys . SNAP output
|
3a2k
|
ligase-RNA |
X-ray (3.65 Å) |
Nakanishi K, Bonnefond L, Kimura S, Suzuki T,
Ishitani R, Nureki O |
(2009) "Structural
basis for translational fidelity ensured by transfer
RNA lysidine synthetase." Nature,
461, 1144-1148. doi: 10.1038/nature08474.
|
Crystal structure of tils complexed with trna .
SNAP output
|
3a6p
|
protein transport-nuclear protein-RNA |
X-ray (2.92 Å) |
Okada C, Yamashita E, Lee SJ, Shibata S, Katahira J,
Nakagawa A, Yoneda Y, Tsukihara T |
(2009) "A
high-resolution structure of the pre-microRNA nuclear
export machinery." Science,
326, 1275-1279. doi: 10.1126/science.1178705.
|
Crystal structure of exportin-5:rangtp:pre-mirna
complex . SNAP
output
|
3adb
|
transferase-RNA |
X-ray (2.8 Å) |
Chiba S, Itoh Y, Sekine S, Yokoyama S |
(2010) "Structural
Basis for the Major Role of O-Phosphoseryl-tRNA Kinase
in the UGA-Specific Encoding of Selenocysteine."
Mol.Cell, 39, 410-420. doi:
10.1016/j.molcel.2010.07.018.
|
Crystal structure of o-phosphoseryl-trna kinase
complexed with selenocysteine trna and amppnp (crystal
type 1) . SNAP
output
|
3adc
|
transferase-RNA |
X-ray (2.9 Å) |
Chiba S, Itoh Y, Sekine S, Yokoyama S |
(2010) "Structural
Basis for the Major Role of O-Phosphoseryl-tRNA Kinase
in the UGA-Specific Encoding of Selenocysteine."
Mol.Cell, 39, 410-420. doi:
10.1016/j.molcel.2010.07.018.
|
Crystal structure of o-phosphoseryl-trna kinase
complexed with selenocysteine trna and amppnp (crystal
type 2) . SNAP
output
|
3add
|
transferase-RNA |
X-ray (2.4 Å) |
Chiba S, Itoh Y, Sekine S, Yokoyama S |
(2010) "Structural
Basis for the Major Role of O-Phosphoseryl-tRNA Kinase
in the UGA-Specific Encoding of Selenocysteine."
Mol.Cell, 39, 410-420. doi:
10.1016/j.molcel.2010.07.018.
|
Crystal structure of o-phosphoseryl-trna kinase
complexed with selenocysteine trna and amppnp (crystal
type 3) . SNAP
output
|
3adi
|
gene regulation-RNA |
X-ray (3.2 Å) |
Yang SW, Chen HY, Yang J, Machida S, Chua NH, Yuan
YA |
(2010) "Structure
of arabidopsis HYPONASTIC LEAVES1 and its molecular
implications for miRNA processing."
Structure, 18, 594-605. doi:
10.1016/j.str.2010.02.006.
|
Structure of arabidopsis hyl1 and its molecular
implications for mirna processing . SNAP output
|
3adl
|
gene regulation-RNA |
X-ray (2.2 Å) |
Yang SW, Chen HY, Yang J, Machida S, Chua NH, Yuan
YA |
(2010) "Structure
of arabidopsis HYPONASTIC LEAVES1 and its molecular
implications for miRNA processing."
Structure, 18, 594-605. doi:
10.1016/j.str.2010.02.006.
|
Structure of trbp2 and its molecule implications for
mirna processing . SNAP
output
|
3aev
|
translation-RNA binding protein-RNA |
X-ray (2.8 Å) |
Jia MZ, Horita S, Nagata K, Tanokura M |
(2010) "An
archaeal Dim2-like protein, aDim2p, forms a ternary
complex with a/eIF2 alpha and the 3' end fragment of
16S rRNA." J.Mol.Biol.,
398, 774-785. doi: 10.1016/j.jmb.2010.03.055.
|
Crystal structure of a-eif2alpha-adim2p-rrna complex
from pyrococcus horikoshii ot3 . SNAP output
|
3af6
|
hydrolase-RNA |
X-ray (2.6 Å) |
Nishida Y, Ishikawa H, Baba S, Nakagawa N, Kuramitsu
S, Masui R |
(2010) "Crystal
structure of an archaeal cleavage and polyadenylation
specificity factor subunit from Pyrococcus
horikoshii." Proteins,
78, 2395-2398. doi: 10.1002/prot.22748.
|
The crystal structure of an archaeal cpsf subunit,
ph1404 from pyrococcus horikoshii complexed with
RNA-analog . SNAP
output
|
3agv
|
immune system-RNA |
X-ray (2.15 Å) |
Nomura Y, Sugiyama S, Sakamoto T, Miyakawa S, Adachi
H, Takano K, Murakami S, Inoue T, Mori Y, Nakamura Y,
Matsumura H |
(2010) "Conformational
plasticity of RNA for target recognition as revealed by
the 2.15 A crystal structure of a human IgG-aptamer
complex." Nucleic Acids Res.,
38, 7822-7829. doi: 10.1093/nar/gkq615.
|
Crystal structure of a human igg-aptamer complex .
SNAP output
|
3ahu
|
translation-RNA |
X-ray (2.2 Å) |
Someya T, Baba S, Fujimoto M, Kumasaka T, Kawai G,
Nakamura K |
"Crystal structure of YmaH (Hfq) from Bacillus
subtilis in complex with an RNA aptamer." |
Crystal structure of ymah (hfq) from bacillus subtilis
in complex with an RNA aptamer. . SNAP output
|
3akz
|
ligase-RNA |
X-ray (2.9 Å) |
Ito T, Yokoyama S |
(2010) "Two
enzymes bound to one transfer RNA assume alternative
conformations for consecutive reactions."
Nature, 467, 612-616. doi:
10.1038/nature09411.
|
Crystal structure of thermotoga maritima
nondiscriminating glutamyl-trna synthetase in complex
with trnagln and a glutamyl-amp analog . SNAP output
|
3al0
|
ligase-RNA |
X-ray (3.368 Å) |
Ito T, Yokoyama S |
(2010) "Two
enzymes bound to one transfer RNA assume alternative
conformations for consecutive reactions."
Nature, 467, 612-616. doi:
10.1038/nature09411.
|
Crystal structure of the glutamine transamidosome from
thermotoga maritima in the glutamylation state. .
SNAP output
|
3am1
|
transferase-RNA |
X-ray (2.4 Å) |
Sherrer RL, Araiso Y, Aldag C, Ishitani R, Ho JML,
Soll D, Nureki O |
(2011) "C-terminal
domain of archaeal O-phosphoseryl-tRNA kinase displays
large-scale motion to bind the 7-bp D-stem of archaeal
tRNA(Sec)." Nucleic Acids Res.,
39, 1034-1041. doi: 10.1093/nar/gkq845.
|
Crystal structure of o-phosphoseryl-trna kinase
complexed with anticodon-stem-loop truncated trna(sec)
. SNAP output
|
3amt
|
RNA binding protein-RNA |
X-ray (2.9 Å) |
Osawa T, Kimura S, Terasaka N, Inanaga H, Suzuki T,
Numata T |
(2011) "Structural
basis of tRNA agmatinylation essential for AUA codon
decoding." Nat.Struct.Mol.Biol.,
18, 1275-1280. doi: 10.1038/nsmb.2144.
|
Crystal structure of the tias-trna(ile2)-atp complex .
SNAP output
|
3amu
|
RNA binding protein-RNA |
X-ray (3.1 Å) |
Osawa T, Kimura S, Terasaka N, Inanaga H, Suzuki T,
Numata T |
(2011) "Structural
basis of tRNA agmatinylation essential for AUA codon
decoding." Nat.Struct.Mol.Biol.,
18, 1275-1280. doi: 10.1038/nsmb.2144.
|
Crystal structure of the
tias-trna(ile2)-ampcpp-agmatine complex . SNAP output
|
3avt
|
translation, transferase-RNA |
X-ray (2.607 Å) |
Takeshita D, Tomita K |
(2012) "Molecular
basis for RNA polymerization by Q beta replicase."
Nat.Struct.Mol.Biol., 19,
229-237. doi: 10.1038/nsmb.2204.
|
Structure of viral RNA polymerase complex 1 . SNAP output
|
3avu
|
translation, transferase-RNA |
X-ray (2.907 Å) |
Takeshita D, Tomita K |
(2012) "Molecular
basis for RNA polymerization by Q beta replicase."
Nat.Struct.Mol.Biol., 19,
229-237. doi: 10.1038/nsmb.2204.
|
Structure of viral RNA polymerase complex 2 . SNAP output
|
3avv
|
translation, transferase-RNA |
X-ray (3.119 Å) |
Takeshita D, Tomita K |
(2012) "Molecular
basis for RNA polymerization by Q beta replicase."
Nat.Struct.Mol.Biol., 19,
229-237. doi: 10.1038/nsmb.2204.
|
Structure of viral RNA polymerase complex 3 . SNAP output
|
3avw
|
translation, transferase-RNA |
X-ray (2.602 Å) |
Takeshita D, Tomita K |
(2012) "Molecular
basis for RNA polymerization by Q beta replicase."
Nat.Struct.Mol.Biol., 19,
229-237. doi: 10.1038/nsmb.2204.
|
Structure of viral RNA polymerase complex 4 . SNAP output
|
3avx
|
translation, transferase-RNA |
X-ray (2.406 Å) |
Takeshita D, Tomita K |
(2012) "Molecular
basis for RNA polymerization by Q beta replicase."
Nat.Struct.Mol.Biol., 19,
229-237. doi: 10.1038/nsmb.2204.
|
Structure of viral RNA polymerase complex 5 . SNAP output
|
3avy
|
translation, transferase-RNA |
X-ray (2.616 Å) |
Takeshita D, Tomita K |
(2012) "Molecular
basis for RNA polymerization by Q beta replicase."
Nat.Struct.Mol.Biol., 19,
229-237. doi: 10.1038/nsmb.2204.
|
Structure of viral RNA polymerase complex 6 . SNAP output
|
3b0u
|
oxidoreductase-RNA |
X-ray (1.948 Å) |
Yu F, Tanaka Y, Yamashita K, Suzuki T, Nakamura A,
Hirano N, Suzuki T, Yao M, Tanaka I |
(2011) "Molecular
basis of dihydrouridine formation on tRNA."
Proc.Natl.Acad.Sci.USA, 108,
19593-19598. doi: 10.1073/pnas.1112352108.
|
Trna-dihydrouridine synthase from thermus thermophilus
in complex with trna fragment . SNAP output
|
3b0v
|
oxidoreductase-RNA |
X-ray (3.51 Å) |
Yu F, Tanaka Y, Yamashita K, Suzuki T, Nakamura A,
Hirano N, Suzuki T, Yao M, Tanaka I |
(2011) "Molecular
basis of dihydrouridine formation on tRNA."
Proc.Natl.Acad.Sci.USA, 108,
19593-19598. doi: 10.1073/pnas.1112352108.
|
Trna-dihydrouridine synthase from thermus thermophilus
in complex with trna . SNAP output
|
3bo0
|
ribosome |
cryo-EM (9.6 Å) |
Menetret JF, Schaletzky J, Clemons WM, Osborne AR,
Skanland SS, Denison C, Gygi SP, Kirkpatrick DS, Park E,
Ludtke SJ, Rapoport TA, Akey CW |
(2007) "Ribosome
binding of a single copy of the SecY complex:
implications for protein translocation."
Mol.Cell, 28, 1083-1092. doi:
10.1016/j.molcel.2007.10.034.
|
Ribosome-secy complex . SNAP output
|
3bo1
|
ribosome |
cryo-EM (9.6 Å) |
Menetret JF, Schaletzky J, Clemons WM, Osborne AR,
Skanland SS, Denison C, Gygi SP, Kirkpatrick DS, Park E,
Ludtke SJ, Rapoport TA, Akey CW |
(2007) "Ribosome
binding of a single copy of the SecY complex:
implications for protein translocation."
Mol.Cell, 28, 1083-1092. doi:
10.1016/j.molcel.2007.10.034.
|
Ribosome-secy complex . SNAP output
|
3bo2
|
nuclear protein-RNA |
X-ray (3.31 Å) |
Lipchock SV, Strobel SA |
(2008) "A
relaxed active site after exon ligation by the group I
intron." Proc.Natl.Acad.Sci.Usa,
105, 5699-5704. doi: 10.1073/pnas.0712016105.
|
A relaxed active site following exon ligation by a
group i intron . SNAP
output
|
3bo3
|
nuclear protein-RNA |
X-ray (3.4 Å) |
Lipchock SV, Strobel SA |
(2008) "A
relaxed active site after exon ligation by the group I
intron." Proc.Natl.Acad.Sci.Usa,
105, 5699-5704. doi: 10.1073/pnas.0712016105.
|
A relaxed active site following exon ligation by a
group i intron . SNAP
output
|
3bo4
|
nuclear protein-RNA |
X-ray (3.33 Å) |
Lipchock SV, Strobel SA |
(2008) "A
relaxed active site after exon ligation by the group I
intron." Proc.Natl.Acad.Sci.Usa,
105, 5699-5704. doi: 10.1073/pnas.0712016105.
|
A relaxed active site following exon ligation by a
group i intron . SNAP
output
|
3boy
|
transcription-RNA |
X-ray (1.7 Å) |
Kumarevel T, Balasundaresan D, Jeyakanthan J, Shinkai
A, Yokoyama S, Kumar PKR |
"Crystal Structure of HutP complexed with the 55-mer
RNA." |
Crystal structure of the hutp antitermination complex
bound to the hut mrna . SNAP output
|
3bsb
|
RNA binding protein-RNA |
X-ray (2.8 Å) |
Gupta YK, Nair DT, Wharton RP, Aggarwal AK |
(2008) "Structures
of human Pumilio with noncognate RNAs reveal molecular
mechanisms for binding promiscuity."
Structure, 16, 549-557. doi:
10.1016/j.str.2008.01.006.
|
Crystal structure of human pumilio1 in complex with
cyclinb reverse RNA . SNAP output
|
3bsn
|
transferase-RNA |
X-ray (1.8 Å) |
Zamyatkin DF, Parra F, Alonso JM, Harki DA, Peterson
BR, Grochulski P, Ng KK |
(2008) "Structural
insights into mechanisms of catalysis and inhibition in
norwalk virus polymerase." J.Biol.Chem.,
283, 7705-7712. doi: 10.1074/jbc.M709563200.
|
Norwalk virus polymerase bound to 5-nitrocytidine
triphosphate and primer-template RNA . SNAP output
|
3bso
|
transferase-RNA |
X-ray (1.74 Å) |
Zamyatkin DF, Parra F, Alonso JM, Harki DA, Peterson
BR, Grochulski P, Ng KK |
(2008) "Structural
insights into mechanisms of catalysis and inhibition in
norwalk virus polymerase." J.Biol.Chem.,
283, 7705-7712. doi: 10.1074/jbc.M709563200.
|
Norwalk virus polymerase bound to cytidine
5'-triphosphate and primer-template RNA . SNAP output
|
3bsx
|
RNA binding protein-RNA |
X-ray (2.32 Å) |
Gupta YK, Nair DT, Wharton RP, Aggarwal AK |
(2008) "Structures
of human Pumilio with noncognate RNAs reveal molecular
mechanisms for binding promiscuity."
Structure, 16, 549-557. doi:
10.1016/j.str.2008.01.006.
|
Crystal structure of human pumilio 1 in complex with
puf5 RNA . SNAP
output
|
3bt7
|
transferase-RNA |
X-ray (2.43 Å) |
Alian A, Lee TT, Griner SL, Stroud RM, Finer-Moore
J |
(2008) "Structure
of a TrmA-RNA complex: A consensus RNA fold contributes
to substrate selectivity and catalysis in m5U
methyltransferases."
Proc.Natl.Acad.Sci.Usa, 105,
6876-6881. doi: 10.1073/pnas.0802247105.
|
Structure of e. coli 5-methyluridine methyltransferase
trma in complex with 19 nucleotide t-arm analogue .
SNAP output
|
3bx2
|
transcription, RNA binding protein-RNA |
X-ray (2.84 Å) |
Miller MT, Higgin JJ, Hall TMT |
(2008) "Basis of
altered RNA-binding specificity by PUF proteins
revealed by crystal structures of yeast Puf4p."
Nat.Struct.Mol.Biol., 15,
397-402. doi: 10.1038/nsmb.1390.
|
Puf4 RNA binding domain bound to ho endonuclease RNA 3'
utr recognition sequence . SNAP output
|
3bx3
|
transcription, RNA binding protein-RNA |
X-ray (3.0 Å) |
Miller MT, Higgin JJ, Hall TMT |
(2008) "Basis of
altered RNA-binding specificity by PUF proteins
revealed by crystal structures of yeast Puf4p."
Nat.Struct.Mol.Biol., 15,
397-402. doi: 10.1038/nsmb.1390.
|
Puf4 t650c-c724r mutant bound to cox17 RNA 3' utr
recognition sequence . SNAP output
|
3cc2
|
ribosome |
X-ray (2.4 Å) |
Blaha G, Gurel G, Schroeder SJ, Moore PB, Steitz
TA |
(2008) "Mutations
outside the anisomycin-binding site can make ribosomes
drug-resistant." J.Mol.Biol.,
379, 505-519. doi: 10.1016/j.jmb.2008.03.075.
|
The refined crystal structure of the haloarcula
marismortui large ribosomal subunit at 2.4 angstrom
resolution with rrna sequence for the 23s rrna and
genome-derived sequences for r-proteins . SNAP output
|
3cc4
|
ribosome |
X-ray (2.7 Å) |
Blaha G, Gurel G, Schroeder SJ, Moore PB, Steitz
TA |
(2008) "Mutations
outside the anisomycin-binding site can make ribosomes
drug-resistant." J.Mol.Biol.,
379, 505-519. doi: 10.1016/j.jmb.2008.03.075.
|
Co-crystal structure of anisomycin bound to the 50s
ribosomal subunit . SNAP
output
|
3cc7
|
ribosome |
X-ray (2.7 Å) |
Blaha G, Gurel G, Schroeder SJ, Moore PB, Steitz
TA |
(2008) "Mutations
outside the anisomycin-binding site can make ribosomes
drug-resistant." J.Mol.Biol.,
379, 505-519. doi: 10.1016/j.jmb.2008.03.075.
|
Structure of anisomycin resistant 50s ribosomal
subunit: 23s rrna mutation c2487u . SNAP output
|
3cce
|
ribosome |
X-ray (2.75 Å) |
Blaha G, Gurel G, Schroeder SJ, Moore PB, Steitz
TA |
(2008) "Mutations
outside the anisomycin-binding site can make ribosomes
drug-resistant." J.Mol.Biol.,
379, 505-519. doi: 10.1016/j.jmb.2008.03.075.
|
Structure of anisomycin resistant 50s ribosomal
subunit: 23s rrna mutation u2535a . SNAP output
|
3ccj
|
ribosome |
X-ray (3.3 Å) |
Blaha G, Gurel G, Schroeder SJ, Moore PB, Steitz
TA |
(2008) "Mutations
outside the anisomycin-binding site can make ribosomes
drug-resistant." J.Mol.Biol.,
379, 505-519. doi: 10.1016/j.jmb.2008.03.075.
|
Structure of anisomycin resistant 50s ribosomal
subunit: 23s rrna mutation c2534u . SNAP output
|
3ccl
|
ribosome |
X-ray (2.9 Å) |
Blaha G, Gurel G, Schroeder SJ, Moore PB, Steitz
TA |
(2008) "Mutations
outside the anisomycin-binding site can make ribosomes
drug-resistant." J.Mol.Biol.,
379, 505-519. doi: 10.1016/j.jmb.2008.03.075.
|
Structure of anisomycin resistant 50s ribosomal
subunit: 23s rrna mutation u2535c. density for
anisomycin is visible but not included in model. .
SNAP output
|
3ccm
|
ribosome |
X-ray (2.55 Å) |
Blaha G, Gurel G, Schroeder SJ, Moore PB, Steitz
TA |
(2008) "Mutations
outside the anisomycin-binding site can make ribosomes
drug-resistant." J.Mol.Biol.,
379, 505-519. doi: 10.1016/j.jmb.2008.03.075.
|
Structure of anisomycin resistant 50s ribosomal
subunit: 23s rrna mutation g2611u . SNAP output
|
3ccq
|
ribosome |
X-ray (2.9 Å) |
Blaha G, Gurel G, Schroeder SJ, Moore PB, Steitz
TA |
(2008) "Mutations
outside the anisomycin-binding site can make ribosomes
drug-resistant." J.Mol.Biol.,
379, 505-519. doi: 10.1016/j.jmb.2008.03.075.
|
Structure of anisomycin resistant 50s ribosomal
subunit: 23s rrna mutation a2488u . SNAP output
|
3ccr
|
ribosome |
X-ray (3.0 Å) |
Blaha G, Gurel G, Schroeder SJ, Moore PB, Steitz
TA |
(2008) "Mutations
outside the anisomycin-binding site can make ribosomes
drug-resistant." J.Mol.Biol.,
379, 505-519. doi: 10.1016/j.jmb.2008.03.075.
|
Structure of anisomycin resistant 50s ribosomal
subunit: 23s rrna mutation a2488c. density for
anisomycin is visible but not included in the model. .
SNAP output
|
3ccs
|
ribosome |
X-ray (2.95 Å) |
Blaha G, Gurel G, Schroeder SJ, Moore PB, Steitz
TA |
(2008) "Mutations
outside the anisomycin-binding site can make ribosomes
drug-resistant." J.Mol.Biol.,
379, 505-519. doi: 10.1016/j.jmb.2008.03.075.
|
Structure of anisomycin resistant 50s ribosomal
subunit: 23s rrna mutation g2482a . SNAP output
|
3ccu
|
ribosome |
X-ray (2.8 Å) |
Blaha G, Gurel G, Schroeder SJ, Moore PB, Steitz
TA |
(2008) "Mutations
outside the anisomycin-binding site can make ribosomes
drug-resistant." J.Mol.Biol.,
379, 505-519. doi: 10.1016/j.jmb.2008.03.075.
|
Structure of anisomycin resistant 50s ribosomal
subunit: 23s rrna mutation g2482c . SNAP output
|
3ccv
|
ribosome |
X-ray (2.9 Å) |
Blaha G, Gurel G, Schroeder SJ, Moore PB, Steitz
TA |
(2008) "Mutations
outside the anisomycin-binding site can make ribosomes
drug-resistant." J.Mol.Biol.,
379, 505-519. doi: 10.1016/j.jmb.2008.03.075.
|
Structure of anisomycin resistant 50s ribosomal
subunit: 23s rrna mutation g2616a . SNAP output
|
3cd6
|
ribosome |
X-ray (2.75 Å) |
Blaha G, Gurel G, Schroeder SJ, Moore PB, Steitz
TA |
(2008) "Mutations
outside the anisomycin-binding site can make ribosomes
drug-resistant." J.Mol.Biol.,
379, 505-519. doi: 10.1016/j.jmb.2008.03.075.
|
Co-cystal of large ribosomal subunit mutant g2616a with
cc-puromycin . SNAP
output
|
3cf5
|
ribosome-antibiotic |
X-ray (3.3 Å) |
Harms JM, Wilson DN, Schluenzen F, Connell SR,
Stachelhaus T, Zaborowska Z, Spahn CM, Fucini P |
(2008) "Translational
Regulation Via L11: Molecular Switches on the Ribosome
Turned on and Off by Thiostrepton and Micrococcin."
Mol.Cell, 30, 26. doi:
10.1016/J.MOLCEL.2008.01.009.
|
Thiopeptide antibiotic thiostrepton bound to the large
ribosomal subunit of deinococcus radiodurans . SNAP output
|
3ciy
|
immune system-RNA |
X-ray (3.41 Å) |
Liu L, Botos I, Wang Y, Leonard JN, Shiloach J, Segal
DM, Davies DR |
(2008) "Structural
basis of toll-like receptor 3 signaling with
double-stranded RNA." Science,
320, 379-381. doi: 10.1126/science.1155406.
|
Mouse toll-like receptor 3 ectodomain complexed with
double-stranded RNA . SNAP output
|
3cma
|
ribosome |
X-ray (2.8 Å) |
Simonovic M, Steitz TA |
(2008) "Peptidyl-CCA
deacylation on the ribosome promoted by induced fit and
the O3'-hydroxyl group of A76 of the unacylated A-site
tRNA." Rna, 14,
2372-2378. doi: 10.1261/rna.1118908.
|
The structure of cca and cca-phe-cap-bio bound to the
large ribosomal subunit of haloarcula marismortui .
SNAP output
|
3cme
|
ribosome |
X-ray (2.95 Å) |
Simonovic M, Steitz TA |
(2008) "Peptidyl-CCA
deacylation on the ribosome promoted by induced fit and
the O3'-hydroxyl group of A76 of the unacylated A-site
tRNA." Rna, 14,
2372-2378. doi: 10.1261/rna.1118908.
|
The structure of ca and cca-phe-cap-bio bound to the
large ribosomal subunit of haloarcula marismortui .
SNAP output
|
3cpw
|
ribosome |
X-ray (2.7 Å) |
Ippolito JA, Kanyo ZK, Wang D, Franceschi FJ, Moore
PB, Steitz TA, Duffy EM |
(2008) "Crystal
Structure of the Oxazolidinone Antibiotic Linezolid
Bound to the 50S Ribosomal Subunit."
J.Med.Chem., 51, 3353-3356.
doi: 10.1021/jm800379d.
|
The structure of the antibiotic linezolid bound to the
large ribosomal subunit of haloarcula marismortui .
SNAP output
|
3cul
|
RNA-RNA binding |
X-ray (2.8 Å) |
Xiao H, Murakami H, Suga H, Ferre-D'Amare AR |
(2008) "Structural
basis of specific tRNA aminoacylation by a small in
vitro selected ribozyme." Nature,
454, 358-361. doi: 10.1038/nature07033.
|
Aminoacyl-trna synthetase ribozyme . SNAP output
|
3cun
|
RNA-RNA binding |
X-ray (3.0 Å) |
Xiao H, Murakami H, Suga H, Ferre-D'Amare AR |
(2008) "Structural
basis of specific tRNA aminoacylation by a small in
vitro selected ribozyme." Nature,
454, 358-361. doi: 10.1038/nature07033.
|
Aminoacyl-trna synthetase ribozyme . SNAP output
|
3cxc
|
ribosome |
X-ray (3.0 Å) |
Zhou J, Bhattacharjee A, Chen S, Chen Y, Duffy E,
Farmer J, Goldberg J, Hanselmann R, Ippolito JA, Lou R,
Orbin A, Oyelere A, Salvino J, Springer D, Tran J, Wang
D, Wu Y, Johnson G |
(2008) "Design
at the atomic level: design of biaryloxazolidinones as
potent orally active antibiotics."
Bioorg.Med.Chem.Lett., 18,
6175-6178. doi: 10.1016/j.bmcl.2008.10.011.
|
The structure of an enhanced oxazolidinone inhibitor
bound to the 50s ribosomal subunit of h. marismortui .
SNAP output
|
3cz3
|
viral protein-RNA |
X-ray (3.23 Å) |
Ma JB, Li F, Ding SW, Patel DJ |
"Structural Basis for siRNA Recognition by 2b, a
Viral Suppressor of Non-Cell Autonomous RNA
Silencing." |
Crystal structure of tomato aspermy virus 2b in complex
with sirna . SNAP
output
|
3dd2
|
hydrolase-hydrolase inhibitor-RNA |
X-ray (1.9 Å) |
Long SB, Long MB, White RR, Sullenger BA |
(2008) "Crystal
structure of an RNA aptamer bound to thrombin."
Rna, 14, 2504-2512. doi:
10.1261/rna.1239308.
|
Crystal structure of an RNA aptamer bound to human
thrombin . SNAP
output
|
3deg
|
ribosome |
cryo-EM (10.9 Å) |
Connell SR, Topf M, Qin Y, Wilson DN, Mielke T,
Fucini P, Nierhaus KH, Spahn CMT |
(2008) "A new
tRNA intermediate revealed on the ribosome during
EF4-mediated back-translocation."
Nat.Struct.Mol.Biol., 15,
910-915. doi: 10.1038/nsmb.1469.
|
Complex of elongating escherichia coli 70s ribosome and
ef4(lepa)-gmppnp . SNAP
output
|
3dh3
|
isomerase-RNA |
X-ray (3.0 Å) |
Alian A, DeGiovanni A, Griner SL, Finer-Moore JS,
Stroud RM |
(2009) "Crystal
structure of an RluF-RNA complex: a base-pair
rearrangement is the key to selectivity of RluF for
U2604 of the ribosome." J.Mol.Biol.,
388, 785-800. doi: 10.1016/j.jmb.2009.03.029.
|
Crystal structure of rluf in complex with a 22
nucleotide RNA substrate . SNAP output
|
3dkn
|
protein transport-RNA |
cryo-EM (8.7 Å) |
Menetret JF, Hegde RS, Aguiar M, Gygi SP, Park E,
Rapoport TA, Akey CW |
(2008) "Single
copies of Sec61 and TRAP associate with a
nontranslating mammalian ribosome."
Structure, 16, 1126-1137.
doi: 10.1016/j.str.2008.05.003.
|
Sec61 in the canine ribosome-channel complex from the
endoplasmic reticulum . SNAP output
|
3dll
|
ribosome |
X-ray (3.5 Å) |
Wilson DN, Schluenzen F, Harms JM, Starosta AL,
Connell SR, Fucini P |
(2008) "The
oxazolidinone antibiotics perturb the ribosomal
peptidyl-transferase center and effect tRNA
positioning." Proc.Natl.Acad.Sci.Usa,
105, 13339-13344. doi: 10.1073/pnas.0804276105.
|
The oxazolidinone antibiotics perturb the ribosomal
peptidyl-transferase center and effect trna positioning
. SNAP output
|
3egz
|
RNA |
X-ray (2.2 Å) |
Xiao H, Edwards TE, Ferre-D'Amare AR |
(2008) "Structural
basis for specific, high-affinity tetracycline binding
by an in vitro evolved aptamer and artificial
riboswitch." Chem.Biol.,
15, 1125-1137. doi: 10.1016/j.chembiol.2008.09.004.
|
Crystal structure of an in vitro evolved tetracycline
aptamer and artificial riboswitch . SNAP output
|
3eph
|
transferase-RNA |
X-ray (2.95 Å) |
Zhou C, Huang RH |
(2008) "Crystallographic
snapshots of eukaryotic dimethylallyltransferase acting
on tRNA: insight into tRNA recognition and reaction
mechanism." Proc.Natl.Acad.Sci.Usa,
105, 16142-16147. doi: 10.1073/pnas.0805680105.
|
Crystallographic snapshots of eukaryotic
dimethylallyltransferase acting on trna: insight into
trna recognition and reaction mechanism . SNAP output
|
3epj
|
transferase-RNA |
X-ray (3.1 Å) |
Zhou C, Huang RH |
(2008) "Crystallographic
snapshots of eukaryotic dimethylallyltransferase acting
on tRNA: insight into tRNA recognition and reaction
mechanism." Proc.Natl.Acad.Sci.Usa,
105, 16142-16147. doi: 10.1073/pnas.0805680105.
|
Crystallographic snapshots of eukaryotic
dimethylallyltransferase acting on trna: insight into
trna recognition and reaction mechanism . SNAP output
|
3epk
|
transferase-RNA |
X-ray (3.2 Å) |
Zhou C, Huang RH |
(2008) "Crystallographic
snapshots of eukaryotic dimethylallyltransferase acting
on tRNA: insight into tRNA recognition and reaction
mechanism." Proc.Natl.Acad.Sci.Usa,
105, 16142-16147. doi: 10.1073/pnas.0805680105.
|
Crystallographic snapshots of eukaryotic
dimethylallyltransferase acting on trna: insight into
trna recognition and reaction mechanism . SNAP output
|
3epl
|
transferase-RNA |
X-ray (3.6 Å) |
Zhou C, Huang RH |
(2008) "Crystallographic
snapshots of eukaryotic dimethylallyltransferase acting
on tRNA: insight into tRNA recognition and reaction
mechanism." Proc.Natl.Acad.Sci.Usa,
105, 16142-16147. doi: 10.1073/pnas.0805680105.
|
Crystallographic snapshots of eukaryotic
dimethylallyltransferase acting on trna: insight into
trna recognition and reaction mechanism . SNAP output
|
3eqt
|
RNA binding protein-RNA |
X-ray (2.0 Å) |
Li X, Ranjith-Kumar CT, Brooks MT, Dharmaiah S, Herr
AB, Kao C, Li P |
(2009) "The
RIG-I-like Receptor LGP2 Recognizes the Termini of
Double-stranded RNA." J.Biol.Chem.,
284, 13881-13891. doi: 10.1074/jbc.M900818200.
|
Crystal structure of human lgp2 c-terminal domain in
complex with dsrna . SNAP output
|
3er9
|
transcription, transferase-RNA |
X-ray (2.06 Å) |
Li C, Li H, Zhou S, Sun E, Yoshizawa J, Poulos TL,
Gershon PD |
(2009) "Polymerase
Translocation with Respect to Single-Stranded Nucleic
Acid: Looping or Wrapping of Primer around a Poly(A)
Polymerase." Structure,
17, 680-689. doi: 10.1016/j.str.2009.03.012.
|
Crystal structure of the heterodimeric vaccinia virus
mrna polyadenylate polymerase complex with uu and
3'-deoxy atp . SNAP
output
|
3ex7
|
hydrolase-RNA binding protein-RNA |
X-ray (2.301 Å) |
Nielsen KH, Chamieh H, Andersen CB, Fredslund F,
Hamborg K, Le Hir H, Andersen GR |
(2009) "Mechanism
of ATP turnover inhibition in the EJC."
Rna, 15, 67-75. doi: 10.1261/rna.1283109.
|
The crystal structure of ejc in its transition state .
SNAP output
|
3fht
|
hydrolase-RNA |
X-ray (2.2 Å) |
von Moeller H, Basquin C, Conti E |
(2009) "The mRNA
export protein DBP5 binds RNA and the cytoplasmic
nucleoporin NUP214 in a mutually exclusive manner."
Nat.Struct.Mol.Biol., 16,
247-254. doi: 10.1038/nsmb.1561.
|
Crystal structure of human dbp5 in complex with amppnp
and RNA . SNAP
output
|
3foz
|
transferase-RNA |
X-ray (2.5 Å) |
Seif E, Hallberg BM |
(2009) "RNA-Protein
Mutually Induced Fit: STRUCTURE OF ESCHERICHIA COLI
ISOPENTENYL-tRNA TRANSFERASE IN COMPLEX WITH
tRNA(Phe)." J.Biol.Chem.,
284, 6600-6604. doi: 10.1074/jbc.C800235200.
|
Structure of e. coli isopentenyl-trna transferase in
complex with e. coli trna(phe) . SNAP output
|
3fte
|
transferase-RNA |
X-ray (3.0 Å) |
Tu C, Tropea JE, Austin BP, Court DL, Waugh DS, Ji
X |
(2009) "Structural
Basis for Binding of RNA and Cofactor by a KsgA
Methyltransferase." Structure,
17, 374-385. doi: 10.1016/j.str.2009.01.010.
|
Crystal structure of a. aeolicus ksga in complex with
RNA . SNAP output
|
3ftf
|
transferase-RNA |
X-ray (2.8 Å) |
Tu C, Tropea JE, Austin BP, Court DL, Waugh DS, Ji
X |
(2009) "Structural
Basis for Binding of RNA and Cofactor by a KsgA
Methyltransferase." Structure,
17, 374-385. doi: 10.1016/j.str.2009.01.010.
|
Crystal structure of a. aeolicus ksga in complex with
RNA and sah . SNAP
output
|
3g0h
|
hydrolase-RNA |
X-ray (2.7 Å) |
Collins R, Karlberg T, Lehtio L, Schutz P, van den
Berg S, Dahlgren LG, Hammarstrom M, Weigelt J, Schuler
H |
(2009) "The
DEXD/H-box RNA Helicase DDX19 Is Regulated by an
{alpha}-Helical Switch." J.Biol.Chem.,
284, 10296-10300. doi: 10.1074/jbc.C900018200.
|
Human dead-box RNA helicase ddx19, in complex with an
atp-analogue and RNA . SNAP output
|
3g4s
|
ribosome |
X-ray (3.2 Å) |
Gurel G, Blaha G, Moore PB, Steitz TA |
(2009) "U2504
determines the species specificity of the A-site cleft
antibiotics: the structures of tiamulin,
homoharringtonine, and bruceantin bound to the
ribosome." J.Mol.Biol.,
389, 146-156. doi: 10.1016/j.jmb.2009.04.005.
|
Co-crystal structure of tiamulin bound to the large
ribosomal subunit . SNAP
output
|
3g6e
|
ribosome |
X-ray (2.7 Å) |
Gurel G, Blaha G, Moore PB, Steitz TA |
(2009) "U2504
determines the species specificity of the A-site cleft
antibiotics: the structures of tiamulin,
homoharringtonine, and bruceantin bound to the
ribosome." J.Mol.Biol.,
389, 146-156. doi: 10.1016/j.jmb.2009.04.005.
|
Co-crystal structure of homoharringtonine bound to the
large ribosomal subunit . SNAP output
|
3g71
|
ribosome |
X-ray (2.85 Å) |
Gurel G, Blaha G, Moore PB, Steitz TA |
(2009) "U2504
determines the species specificity of the A-site cleft
antibiotics: the structures of tiamulin,
homoharringtonine, and bruceantin bound to the
ribosome." J.Mol.Biol.,
389, 146-156. doi: 10.1016/j.jmb.2009.04.005.
|
Co-crystal structure of bruceantin bound to the large
ribosomal subunit . SNAP
output
|
3g8s
|
RNA binding protein-RNA |
X-ray (3.1 Å) |
Cochrane JC, Lipchock SV, Smith KD, Strobel SA |
(2009) "Structural
and chemical basis for glucosamine 6-phosphate binding
and activation of the glmS ribozyme."
Biochemistry, 48, 3239-3246.
doi: 10.1021/bi802069p.
|
Crystal structure of the pre-cleaved bacillus anthracis
glms ribozyme . SNAP
output
|
3g8t
|
RNA binding protein-RNA |
X-ray (3.0 Å) |
Cochrane JC, Lipchock SV, Smith KD, Strobel SA |
(2009) "Structural
and chemical basis for glucosamine 6-phosphate binding
and activation of the glmS ribozyme."
Biochemistry, 48, 3239-3246.
doi: 10.1021/bi802069p.
|
Crystal structure of the g33a mutant bacillus anthracis
glms ribozyme bound to glcn6p . SNAP output
|
3g96
|
RNA binding protein-RNA |
X-ray (3.01 Å) |
Cochrane JC, Lipchock SV, Smith KD, Strobel SA |
(2009) "Structural
and chemical basis for glucosamine 6-phosphate binding
and activation of the glmS ribozyme."
Biochemistry, 48, 3239-3246.
doi: 10.1021/bi802069p.
|
Crystal structure of the bacillus anthracis glms
ribozyme bound to man6p . SNAP output
|
3g9c
|
RNA binding protein-RNA |
X-ray (2.9 Å) |
Cochrane JC, Lipchock SV, Smith KD, Strobel SA |
(2009) "Structural
and chemical basis for glucosamine 6-phosphate binding
and activation of the glmS ribozyme."
Biochemistry, 48, 3239-3246.
doi: 10.1021/bi802069p.
|
Crystal structure of the product bacillus anthracis
glms ribozyme . SNAP
output
|
3g9y
|
transcription-RNA |
X-ray (1.4 Å) |
Loughlin FE, Mansfield RE, Vaz PM, McGrath AP,
Setiyaputra S, Gamsjaeger R, Chen ES, Morris BJ, Guss JM,
Mackay JP |
(2009) "The zinc
fingers of the SR-like protein ZRANB2 are
single-stranded RNA-binding domains that recognize 5'
splice site-like sequences."
Proc.Natl.Acad.Sci.USA, 106,
5581-5586. doi: 10.1073/pnas.0802466106.
|
Crystal structure of the second zinc finger from
zranb2-znf265 bound to 6 nt ssrna sequence agguaa .
SNAP output
|
3gib
|
RNA binding protein-RNA |
X-ray (2.4 Å) |
Link TM, Valentin-Hansen P, Brennan RG |
(2009) "Structure
of Escherichia coli Hfq bound to polyriboadenylate
RNA." Proc.Natl.Acad.Sci.USA,
106, 19292-19297. doi: 10.1073/pnas.0908744106.
|
Crystal structure of the complex of the e. coli hfq
with poly(a) . SNAP
output
|
3gpq
|
viral protein-RNA |
X-ray (2.0 Å) |
Malet H, Coutard B, Jamal S, Dutartre H, Papageorgiou
N, Neuvonen M, Ahola T, Forrester N, Gould EA, Lafitte D,
Ferron F, Lescar J, Gorbalenya AE, de Lamballerie X,
Canard B |
(2009) "The
crystal structures of Chikungunya and Venezuelan equine
encephalitis virus nsP3 macro domains define a
conserved adenosine binding pocket."
J.Virol., 83, 6534-6545. doi:
10.1128/JVI.00189-09.
|
Crystal structure of macro domain of chikungunya virus
in complex with RNA . SNAP output
|
3h5x
|
transferase-RNA |
X-ray (1.77 Å) |
Zamyatkin DF, Parra F, Machin A, Grochulski P, Ng
KK |
(2009) "Binding
of 2'-amino-2'-deoxycytidine-5'-triphosphate to
norovirus polymerase induces rearrangement of the
active site." J.Mol.Biol.,
390, 10-16. doi: 10.1016/j.jmb.2009.04.069.
|
Crystal structure of
2'-amino-2'-deoxy-cytidine-5'-triphosphate bound to
norovirus gii RNA polymerase . SNAP output
|
3h5y
|
transferase-RNA |
X-ray (1.77 Å) |
Zamyatkin DF, Parra F, Machin A, Grochulski P, Ng
KK |
(2009) "Binding
of 2'-amino-2'-deoxycytidine-5'-triphosphate to
norovirus polymerase induces rearrangement of the
active site." J.Mol.Biol.,
390, 10-16. doi: 10.1016/j.jmb.2009.04.069.
|
Norovirus polymerase+primer-template+ctp complex at 6
mm mncl2 . SNAP
output
|
3hay
|
isomerase-biosynthetic protein-RNA |
X-ray (4.99 Å) |
Duan J, Li L, Lu J, Wang W, Ye K |
(2009) "Structural
mechanism of substrate RNA recruitment in H/ACA
RNA-guided pseudouridine synthase."
Mol.Cell, 34, 427-439. doi:
10.1016/j.molcel.2009.05.005.
|
Crystal structure of a substrate-bound full h-aca rnp
from pyrococcus furiosus . SNAP output
|
3hhn
|
ligase-RNA |
X-ray (2.987 Å) |
Shechner DM, Grant RA, Bagby SC, Koldobskaya Y,
Piccirilli JA, Bartel DP |
(2009) "Crystal
structure of the catalytic core of an RNA-polymerase
ribozyme." Science, 326,
1271-1275. doi: 10.1126/science.1174676.
|
Crystal structure of class i ligase ribozyme
self-ligation product, in complex with u1a rbd .
SNAP output
|
3hhz
|
viral protein-RNA |
X-ray (3.5 Å) |
Green TJ, Luo M |
(2009) "Structure
of the vesicular stomatitis virus nucleocapsid in
complex with the nucleocapsid-binding domain of the
small polymerase cofactor, P."
Proc.Natl.Acad.Sci.USA, 106,
11713-11718. doi: 10.1073/pnas.0903228106.
|
Complex of the vesicular stomatitis virus nucleocapsid
and the nucleocapsid-binding domain of the
phosphoprotein . SNAP
output
|
3hjw
|
isomerase-RNA |
X-ray (2.35 Å) |
Liang B, Zhou J, Kahen E, Terns RM, Terns MP, Li
H |
(2009) "Structure
of a functional ribonucleoprotein pseudouridine
synthase bound to a substrate RNA."
Nat.Struct.Mol.Biol., 16,
740-746. doi: 10.1038/nsmb.1624.
|
Structure of a functional ribonucleoprotein
pseudouridine synthase bound to a substrate RNA .
SNAP output
|
3hjy
|
isomerase-RNA |
X-ray (3.65 Å) |
Liang B, Zhou J, Kahen E, Terns RM, Terns MP, Li
H |
(2009) "Structure
of a functional ribonucleoprotein pseudouridine
synthase bound to a substrate RNA."
Nat.Struct.Mol.Biol., 16,
740-746. doi: 10.1038/nsmb.1624.
|
Structure of a functional ribonucleoprotein
pseudouridine synthase bound to a substrate RNA .
SNAP output
|
3hl2
|
transferase |
X-ray (2.81 Å) |
Palioura S, Sherrer RL, Steitz TA, Soll D, Simonovic
M |
(2009) "The
human SepSecS-tRNASec complex reveals the mechanism of
selenocysteine formation." Science,
325, 321-325. doi: 10.1126/science.1173755.
|
The crystal structure of the human sepsecs-trnasec
complex . SNAP
output
|
3hsb
|
RNA binding protein-RNA |
X-ray (2.2 Å) |
Someya T, Baba S, Fujimoto M, Kawai G, Kumasaka T,
Nakamura K |
(2012) "Crystal
structure of Hfq from Bacillus subtilis in complex with
SELEX-derived RNA aptamer: insight into RNA-binding
properties of bacterial Hfq." Nucleic Acids
Res., 40, 1856-1867. doi:
10.1093/nar/gkr892.
|
Crystal structure of ymah (hfq) from bacillus subtilis
in complex with an RNA aptamer . SNAP output
|
3htx
|
transferase-RNA |
X-ray (3.1 Å) |
Huang Y, Ji L, Huang Q, Vassylyev DG, Chen X, Ma
JB |
(2009) "Structural
insights into mechanisms of the small RNA
methyltransferase HEN1." Nature,
461, 823-827. doi: 10.1038/nature08433.
|
Crystal structure of small RNA methyltransferase hen1 .
SNAP output
|
3i55
|
ribosome-antibiotic |
X-ray (3.11 Å) |
Gurel G, Blaha G, Steitz TA, Moore PB |
(2009) "Structures
of triacetyloleandomycin and mycalamide A bind to the
large ribosomal subunit of Haloarcula marismortui."
Antimicrob.Agents Chemother.,
53, 5010-5014. doi: 10.1128/AAC.00817-09.
|
Co-crystal structure of mycalamide a bound to the large
ribosomal subunit . SNAP
output
|
3i56
|
ribosome-antibiotic |
X-ray (2.9 Å) |
Gurel G, Blaha G, Steitz TA, Moore PB |
(2009) "Structures
of triacetyloleandomycin and mycalamide A bind to the
large ribosomal subunit of Haloarcula marismortui."
Antimicrob.Agents Chemother.,
53, 5010-5014. doi: 10.1128/AAC.00817-09.
|
Co-crystal structure of triacetyloleandomcyin bound to
the large ribosomal subunit . SNAP output
|
3i5x
|
hydrolase-RNA |
X-ray (1.9 Å) |
Del Campo M, Lambowitz AM |
(2009) "Structure
of the Yeast DEAD box protein Mss116p reveals two
wedges that crimp RNA." Mol.Cell,
35, 598-609. doi: 10.1016/j.molcel.2009.07.032.
|
Structure of mss116p bound to ssrna and amp-pnp .
SNAP output
|
3i5y
|
hydrolase-RNA |
X-ray (2.49 Å) |
Del Campo M, Lambowitz AM |
(2009) "Structure
of the Yeast DEAD box protein Mss116p reveals two
wedges that crimp RNA." Mol.Cell,
35, 598-609. doi: 10.1016/j.molcel.2009.07.032.
|
Structure of mss116p bound to ssrna containing a single
5-bru and amp-pnp . SNAP
output
|
3i61
|
hydrolase-RNA |
X-ray (2.1 Å) |
Del Campo M, Lambowitz AM |
(2009) "Structure
of the Yeast DEAD box protein Mss116p reveals two
wedges that crimp RNA." Mol.Cell,
35, 598-609. doi: 10.1016/j.molcel.2009.07.032.
|
Structure of mss116p bound to ssrna and adp-beryllium
fluoride . SNAP
output
|
3i62
|
hydrolase-RNA |
X-ray (1.95 Å) |
Del Campo M, Lambowitz AM |
(2009) "Structure
of the Yeast DEAD box protein Mss116p reveals two
wedges that crimp RNA." Mol.Cell,
35, 598-609. doi: 10.1016/j.molcel.2009.07.032.
|
Structure of mss116p bound to ssrna and adp-aluminum
fluoride . SNAP
output
|
3iab
|
hydrolase-RNA |
X-ray (2.7 Å) |
Perederina A, Esakova O, Quan C, Khanova E,
Krasilnikov AS |
(2010) "Eukaryotic
ribonucleases P/MRP: the crystal structure of the P3
domain." Embo J., 29,
761-769. doi: 10.1038/emboj.2009.396.
|
Crystal structure of rnase p -rnase mrp proteins pop6,
pop7 in a complex with the p3 domain of rnase mrp RNA .
SNAP output
|
3ice
|
transcription regulator-RNA |
X-ray (2.8 Å) |
Thomsen ND, Berger JM |
(2009) "Running
in reverse: the structural basis for translocation
polarity in hexameric helicases."
Cell(Cambridge,Mass.), 139,
523-534. doi: 10.1016/j.cell.2009.08.043.
|
Rho transcription termination factor bound to RNA and
adp-bef3 . SNAP
output
|
3icq
|
RNA binding protein |
X-ray (3.2 Å) |
Cook AG, Fukuhara N, Jinek M, Conti E |
(2009) "Structures
of the tRNA export factor in the nuclear and cytosolic
states." Nature, 461,
60-65. doi: 10.1038/nature08394.
|
Karyopherin nuclear state . SNAP output
|
3id5
|
transferase-ribosomal protein-RNA |
X-ray (4.01 Å) |
Ye K, Jia R, Lin J, Ju M, Peng J, Xu A, Zhang L |
(2009) "Structural
organization of box C/D RNA-guided RNA
methyltransferase."
Proc.Natl.Acad.Sci.USA, 106,
13808-13813. doi: 10.1073/pnas.0905128106.
|
Crystal structure of sulfolobus solfataricus c-d rnp
assembled with nop5, fibrillarin, l7ae and a split half
c-d RNA . SNAP
output
|
3ie1
|
hydrolase-RNA |
X-ray (2.85 Å) |
Ishikawa H, Nakagawa N, Kuramitsu S, Masui R |
"Crystal structure of H380A mutant TTHA0252 from
Thermus thermophilus HB8 complexed with RNA." |
Crystal structure of h380a mutant ttha0252 from thermus
thermophilus hb8 complexed with RNA . SNAP output
|
3iem
|
hydrolase-RNA |
X-ray (2.5 Å) |
Ishikawa H, Nakagawa N, Kuramitsu S, Masui R |
"Crystal Structure of TTHA0252 from Thermus
thermophilus HB8 complexed with RNA analog." |
Crystal structure of ttha0252 from thermus thermophilus
hb8 complexed with RNA analog . SNAP output
|
3iev
|
nucleotide binding protein-RNA |
X-ray (1.9 Å) |
Tu C, Zhou X, Tropea JE, Austin BP, Waugh DS, Court
DL, Ji X |
(2009) "Structure
of ERA in complex with the 3' end of 16S rRNA:
implications for ribosome biogenesis."
Proc.Natl.Acad.Sci.USA, 106,
14843-14848. doi: 10.1073/pnas.0904032106.
|
Crystal structure of era in complex with mggnp and the
3' end of 16s rrna . SNAP output
|
3irw
|
RNA binding protein-RNA |
X-ray (2.7 Å) |
Smith KD, Lipchock SV, Ames TD, Wang J, Breaker RR,
Strobel SA |
(2009) "Structural
basis of ligand binding by a c-di-GMP riboswitch."
Nat.Struct.Mol.Biol., 16,
1218-1223. doi: 10.1038/nsmb.1702.
|
Structure of a c-di-gmp riboswitch from v. cholerae .
SNAP output
|
3ivk
|
immune system - RNA |
X-ray (3.1 Å) |
Shechner DM, Grant RA, Bagby SC, Koldobskaya Y,
Piccirilli JA, Bartel DP |
(2009) "Crystal
structure of the catalytic core of an RNA-polymerase
ribozyme." Science, 326,
1271-1275. doi: 10.1126/science.1174676.
|
Crystal structure of the catalytic core of an RNA
polymerase ribozyme complexed with an antigen binding
antibody fragment . SNAP
output
|
3iwn
|
RNA-RNA binding protein |
X-ray (3.2 Å) |
Kulshina N, Baird NJ, Ferre-D'Amare AR |
(2009) "Recognition
of the bacterial second messenger cyclic diguanylate by
its cognate riboswitch."
Nat.Struct.Mol.Biol., 16,
1212-1217. doi: 10.1038/nsmb.1701.
|
Co-crystal structure of a bacterial c-di-gmp riboswitch
. SNAP output
|
3iyq
|
ribosomal protein-RNA |
cryo-EM (13.0 Å) |
Weis F, Bron P, Giudice E, Rolland JP, Thomas D,
Felden B, Gillet R |
(2010) "tmRNA-SmpB:
a journey to the centre of the bacterial ribosome."
Embo J., 29, 3810-3818. doi:
10.1038/emboj.2010.252.
|
Tmrna-smpb: a journey to the center of the bacterial
ribosome . SNAP
output
|
3iyr
|
ribosomal protein-RNA |
cryo-EM (13.0 Å) |
Weis F, Bron P, Giudice E, Rolland JP, Thomas D,
Felden B, Gillet R |
(2010) "tmRNA-SmpB:
a journey to the centre of the bacterial ribosome."
Embo J., 29, 3810-3818. doi:
10.1038/emboj.2010.252.
|
Tmrna-smpb: a journey to the center of the bacterial
ribosome . SNAP
output
|
3iz4
|
RNA binding protein-RNA |
cryo-EM (13.6 Å) |
Fu J, Hashem Y, Wower I, Lei J, Liao HY, Zwieb C,
Wower J, Frank J |
(2010) "Visualizing
the transfer-messenger RNA as the ribosome resumes
translation." Embo J.,
29, 3819-3825. doi: 10.1038/emboj.2010.255.
|
Modified e. coli tmrna in the resume state with the
trna-like domain in the ribosomal p site interacting
with the smpb . SNAP
output
|
3izy
|
RNA, ribosomal protein |
cryo-EM (10.8 Å) |
Yassin AS, Haque ME, Datta PP, Elmore K, Banavali NK,
Spremulli LL, Agrawal RK |
(2011) "Insertion
domain within mammalian mitochondrial translation
initiation factor 2 serves the role of eubacterial
initiation factor 1."
Proc.Natl.Acad.Sci.USA, 108,
3918-3923. doi: 10.1073/pnas.1017425108.
|
Mammalian mitochondrial translation initiation factor 2
. SNAP output
|
3izz
|
RNA, ribosomal protein |
cryo-EM (10.8 Å) |
Yassin AS, Haque ME, Datta PP, Elmore K, Banavali NK,
Spremulli LL, Agrawal RK |
(2011) "Insertion
domain within mammalian mitochondrial translation
initiation factor 2 serves the role of eubacterial
initiation factor 1."
Proc.Natl.Acad.Sci.USA, 108,
3918-3923. doi: 10.1073/pnas.1017425108.
|
Models for ribosome components that are nearest
neighbors to the bovine mitochondrial initiation
factor2 bound to the e. coli ribosome . SNAP output
|
3j06
|
virus |
cryo-EM (3.3 Å) |
Ge P, Zhou ZH |
(2011) "Hydrogen-bonding
networks and RNA bases revealed by cryo electron
microscopy suggest a triggering mechanism for calcium
switches." Proc.Natl.Acad.Sci.USA,
108, 9637-9642. doi: 10.1073/pnas.1018104108.
|
Cryoem helical reconstruction of tmv . SNAP output
|
3j0d
|
translation |
cryo-EM (11.1 Å) |
Yokoyama T, Shaikh TR, Iwakura N, Kaji H, Kaji A,
Agrawal RK |
(2012) "Structural
insights into initial and intermediate steps of the
ribosome-recycling process." Embo J.,
31, 1836-1846. doi: 10.1038/emboj.2012.22.
|
Models for the t. thermophilus ribosome recycling
factor bound to the e. coli post-termination complex .
SNAP output
|
3j0e
|
translation |
cryo-EM (9.9 Å) |
Yokoyama T, Shaikh TR, Iwakura N, Kaji H, Kaji A,
Agrawal RK |
(2012) "Structural
insights into initial and intermediate steps of the
ribosome-recycling process." Embo J.,
31, 1836-1846. doi: 10.1038/emboj.2012.22.
|
Models for the t. thermophilus ribosome recycling
factor and the e. coli elongation factor g bound to the
e. coli post-termination complex . SNAP output
|
3j0l
|
ribosome |
cryo-EM (9.8 Å) |
Budkevich T, Giesebrecht J, Altman RB, Munro JB,
Mielke T, Nierhaus KH, Blanchard SC, Spahn CM |
(2011) "Structure
and dynamics of the Mammalian ribosomal
pretranslocation complex." Mol.Cell,
44, 214-224. doi: 10.1016/j.molcel.2011.07.040.
|
Core of mammalian 80s pre-ribosome in complex with
trnas fitted to a 9.8a cryo-EM map: classic pre state 1
. SNAP output
|
3j0o
|
ribosome |
cryo-EM (9.0 Å) |
Budkevich T, Giesebrecht J, Altman RB, Munro JB,
Mielke T, Nierhaus KH, Blanchard SC, Spahn CM |
(2011) "Structure
and dynamics of the Mammalian ribosomal
pretranslocation complex." Mol.Cell,
44, 214-224. doi: 10.1016/j.molcel.2011.07.040.
|
Core of mammalian 80s pre-ribosome in complex with
trnas fitted to a 9a cryo-EM map: classic pre state 2 .
SNAP output
|
3j0p
|
ribosome |
cryo-EM (10.6 Å) |
Budkevich T, Giesebrecht J, Altman RB, Munro JB,
Mielke T, Nierhaus KH, Blanchard SC, Spahn CM |
(2011) "Structure
and dynamics of the Mammalian ribosomal
pretranslocation complex." Mol.Cell,
44, 214-224. doi: 10.1016/j.molcel.2011.07.040.
|
Core of mammalian 80s pre-ribosome in complex with
trnas fitted to a 10.6a cryo-EM map: rotated pre state
1 . SNAP output
|
3j0q
|
ribosome |
cryo-EM (10.6 Å) |
Budkevich T, Giesebrecht J, Altman RB, Munro JB,
Mielke T, Nierhaus KH, Blanchard SC, Spahn CM |
(2011) "Structure
and dynamics of the Mammalian ribosomal
pretranslocation complex." Mol.Cell,
44, 214-224. doi: 10.1016/j.molcel.2011.07.040.
|
Core of mammalian 80s pre-ribosome in complex with
trnas fitted to a 10.6a cryo-EM map: rotated pre state
2 . SNAP output
|
3j16
|
ribosome |
cryo-EM (7.2 Å) |
Becker T, Franckenberg S, Wickles S, Shoemaker CJ,
Anger AM, Armache J-P, Sieber H, Ungewickell C,
Berninghausen O, Daberkow I, Karcher A, Thomm M, Hopfner
KP, Green R, Beckmann R |
(2012) "Structural
basis of highly conserved ribosome recycling in
eukaryotes and archaea." Nature,
482, 501-506. doi: 10.1038/nature10829.
|
Models of ribosome-bound dom34p and rli1p and their
ribosomal binding partners . SNAP output
|
3j3v
|
ribosome |
cryo-EM (13.3 Å) |
Li N, Chen Y, Guo Q, Zhang Y, Yuan Y, Ma C, Deng H,
Lei J, Gao N |
(2013) "Cryo-EM
structures of the late-stage assembly intermediates of
the bacterial 50S ribosomal subunit." Nucleic
Acids Res., 41, 7073-7083. doi:
10.1093/nar/gkt423.
|
Atomic model of the immature 50s subunit from bacillus
subtilis (state i-a) . SNAP output
|
3j3w
|
ribosome |
cryo-EM (10.7 Å) |
Li N, Chen Y, Guo Q, Zhang Y, Yuan Y, Ma C, Deng H,
Lei J, Gao N |
(2013) "Cryo-EM
structures of the late-stage assembly intermediates of
the bacterial 50S ribosomal subunit." Nucleic
Acids Res., 41, 7073-7083. doi:
10.1093/nar/gkt423.
|
Atomic model of the immature 50s subunit from bacillus
subtilis (state ii-a) . SNAP output
|
3j45
|
ribosome-protein transport |
cryo-EM (9.5 Å) |
Park E, Menetret JF, Gumbart JC, Ludtke SJ, Li W,
Whynot A, Rapoport TA, Akey CW |
(2013) "Structure
of the SecY channel during initiation of protein
translocation." Nature,
506, 102-106. doi: 10.1038/nature12720.
|
Structure of a non-translocating secy protein channel
with the 70s ribosome . SNAP output
|
3j46
|
ribosome-protein transport |
cryo-EM (10.1 Å) |
Park E, Menetret JF, Gumbart JC, Ludtke SJ, Li W,
Whynot A, Rapoport TA, Akey CW |
(2013) "Structure
of the SecY channel during initiation of protein
translocation." Nature,
506, 102-106. doi: 10.1038/nature12720.
|
Structure of the secy protein translocation channel in
action . SNAP output
|
3j5l
|
ribosome-antibiotic |
cryo-EM (6.6 Å) |
Arenz S, Ramu H, Gupta P, Berninghausen O, Beckmann
R, Vazquez-Laslop N, Mankin AS, Wilson DN |
(2014) "Molecular
basis for erythromycin-dependent ribosome stalling
during translation of the ErmBL leader peptide."
Nat Commun, 5, 3501. doi:
10.1038/ncomms4501.
|
Structure of the e. coli 50s subunit with ermbl nascent
chain . SNAP output
|
3j5s
|
ribosome-translation |
cryo-EM (7.5 Å) |
Chen B, Boel G, Hashem Y, Ning W, Fei J, Wang C,
Gonzalez RL, Hunt JF, Frank J |
(2014) "EttA
regulates translation by binding the ribosomal E site
and restricting ribosome-tRNA dynamics."
Nat.Struct.Mol.Biol., 21,
152-159. doi: 10.1038/nsmb.2741.
|
Etta binds to ribosome exit site and regulates
translation by restricting ribosome and trna dynamics .
SNAP output
|
3j5y
|
translation-RNA |
cryo-EM (9.7 Å) |
des Georges A, Hashem Y, Unbehaun A, Grassucci RA,
Taylor D, Hellen CU, Pestova TV, Frank J |
(2014) "Structure
of the mammalian ribosomal pre-termination complex
associated with eRF1*eRF3*GDPNP." Nucleic Acids
Res., 42, 3409-3418. doi:
10.1093/nar/gkt1279.
|
Structure of the mammalian ribosomal pre-termination
complex associated with erf1-erf3-gdpnp . SNAP output
|
3j6b
|
ribosome |
cryo-EM (3.2 Å) |
Amunts A, Brown A, Bai XC, Llacer JL, Hussain T,
Emsley P, Long F, Murshudov G, Scheres SH, Ramakrishnan
V |
(2014) "Structure
of the yeast mitochondrial large ribosomal
subunit." Science, 343,
1485-1489. doi: 10.1126/science.1249410.
|
Structure of the yeast mitochondrial large ribosomal
subunit . SNAP
output
|
3j77
|
ribosome |
cryo-EM (6.2 Å) |
Svidritskiy E, Brilot AF, Koh CS, Grigorieff N,
Korostelev AA |
(2014) "Structures
of Yeast 80S Ribosome-tRNA Complexes in the Rotated and
Nonrotated Conformations." Structure,
22, 1210-1218. doi: 10.1016/j.str.2014.06.003.
|
Structures of yeast 80s ribosome-trna complexes in the
rotated and non-rotated conformations (class ii -
rotated ribosome with 1 trna) . SNAP output
|
3j78
|
ribosome |
cryo-EM (6.3 Å) |
Svidritskiy E, Brilot AF, Koh CS, Grigorieff N,
Korostelev AA |
(2014) "Structures
of Yeast 80S Ribosome-tRNA Complexes in the Rotated and
Nonrotated Conformations." Structure,
22, 1210-1218. doi: 10.1016/j.str.2014.06.003.
|
Structures of yeast 80s ribosome-trna complexes in the
rotated and non-rotated conformations (class i -
non-rotated ribosome with 2 trnas) . SNAP output
|
3j79
|
ribosome-inhibitor |
cryo-EM (3.2 Å) |
Wong W, Bai XC, Brown A, Fernandez IS, Hanssen E,
Condron M, Tan YH, Baum J, Scheres SH |
(2014) "Cryo-EM
structure of the Plasmodium falciparum 80S ribosome
bound to the anti-protozoan drug emetine."
Elife, 3, e03080. doi:
10.7554/eLife.03080.
|
cryo-EM structure of the plasmodium falciparum 80s
ribosome bound to the anti-protozoan drug emetine,
large subunit . SNAP
output
|
3j7a
|
ribosome-inhibitor |
cryo-EM (3.2 Å) |
Wong W, Bai XC, Brown A, Fernandez IS, Hanssen E,
Condron M, Tan YH, Baum J, Scheres SH |
(2014) "Cryo-EM
structure of the Plasmodium falciparum 80S ribosome
bound to the anti-protozoan drug emetine."
Elife, 3, e03080. doi:
10.7554/eLife.03080.
|
cryo-EM structure of the plasmodium falciparum 80s
ribosome bound to the anti-protozoan drug emetine,
small subunit . SNAP
output
|
3j7y
|
ribosome |
cryo-EM (3.4 Å) |
Brown A, Amunts A, Bai XC, Sugimoto Y, Edwards PC,
Murshudov G, Scheres SH, Ramakrishnan V |
(2014) "Structure
of the large ribosomal subunit from human
mitochondria." Science,
346, 718-722. doi: 10.1126/science.1258026.
|
Structure of the large ribosomal subunit from human
mitochondria . SNAP
output
|
3j7z
|
ribosome-antibiotic |
cryo-EM (3.9 Å) |
Arenz S, Meydan S, Starosta AL, Berninghausen O,
Beckmann R, Vazquez-Laslop N, Wilson DN |
(2014) "Drug
Sensing by the Ribosome Induces Translational Arrest
via Active Site Perturbation." Mol.Cell,
56, 446-452. doi: 10.1016/j.molcel.2014.09.014.
|
Structure of the e. coli 50s subunit with ermcl nascent
chain . SNAP output
|
3j80
|
ribosome |
cryo-EM (3.75 Å) |
Hussain T, Llacer JL, Fernandez IS, Munoz A,
Martin-Marcos P, Savva CG, Lorsch JR, Hinnebusch AG,
Ramakrishnan V |
(2014) "Structural
changes enable start codon recognition by the
eukaryotic translation initiation complex."
Cell(Cambridge,Mass.), 159,
597-607. doi: 10.1016/j.cell.2014.10.001.
|
Cryoem structure of 40s-eif1-eif1a preinitiation
complex . SNAP
output
|
3j81
|
ribosome |
cryo-EM (4.0 Å) |
Hussain T, Llacer JL, Fernandez IS, Munoz A,
Martin-Marcos P, Savva CG, Lorsch JR, Hinnebusch AG,
Ramakrishnan V |
(2014) "Structural
changes enable start codon recognition by the
eukaryotic translation initiation complex."
Cell(Cambridge,Mass.), 159,
597-607. doi: 10.1016/j.cell.2014.10.001.
|
Cryoem structure of a partial yeast 48s preinitiation
complex . SNAP
output
|
3j8g
|
ribosome |
cryo-EM (5.0 Å) |
Zhang X, Yan K, Zhang Y, Li N, Ma C, Li Z, Zhang Y,
Feng B, Liu J, Sun Y, Xu Y, Lei J, Gao N |
(2014) "Structural
insights into the function of a unique tandem GTPase
EngA in bacterial ribosome assembly." Nucleic
Acids Res. doi: 10.1093/nar/gku1135.
|
Electron cryo-microscopy structure of enga bound with
the 50s ribosomal subunit . SNAP output
|
3j9b
|
RNA binding protein-transferase-RNA |
cryo-EM (4.3 Å) |
Chang S, Sun D, Liang H, Wang J, Li J, Guo L, Wang X,
Guan C, Boruah BM, Yuan L, Feng F, Yang M, Wang L, Wang
Y, Wojdyla J, Li L, Wang J, Wang M, Cheng G, Wang HW, Liu
Y |
(2015) "Cryo-EM
Structure of Influenza Virus RNA Polymerase Complex at
4.3 angstrom Resolution." Mol.Cell. doi:
10.1016/j.molcel.2014.12.031.
|
Electron cryo-microscopy of an RNA polymerase .
SNAP output
|
3j9m
|
ribosome |
cryo-EM (3.5 Å) |
Amunts A, Brown A, Toots J, Scheres SH, Ramakrishnan
V |
(2015) "Ribosome.
The structure of the human mitochondrial ribosome."
Science, 348, 95-98. doi:
10.1126/science.aaa1193.
|
Structure of the human mitochondrial ribosome (class 1)
. SNAP output
|
3j9w
|
ribosome |
cryo-EM (3.9 Å) |
Sohmen D, Chiba S, Shimokawa-Chiba N, Innis CA,
Berninghausen O, Beckmann R, Ito K, Wilson DN |
(2015) "Structure
of the Bacillus subtilis 70S ribosome reveals the basis
for species-specific stalling." Nat
Commun, 6, 6941. doi: 10.1038/ncomms7941.
|
cryo-EM structure of the bacillus subtilis mifm-stalled
ribosome complex . SNAP
output
|
3j9y
|
ribosome |
cryo-EM (3.9 Å) |
Arenz S, Nguyen F, Beckmann R, Wilson DN |
(2015) "Cryo-EM
structure of the tetracycline resistance protein TetM
in complex with a translating ribosome at 3.9- angstrom
resolution." Proc.Natl.Acad.Sci.USA,
112, 5401-5406. doi: 10.1073/pnas.1501775112.
|
cryo-EM structure of tetracycline resistance protein
tetm bound to a translating e.coli ribosome . SNAP output
|
3j9z
|
ribosome |
cryo-EM (3.6 Å) |
Li W, Liu Z, Koripella RK, Langlois R, Sanyal S,
Frank J |
(2015) "Activation
of GTP hydrolysis in mRNA-tRNA translocation by
elongation factor G." Sci Adv,
1, e1500169. doi: 10.1126/sciadv.1500169.
|
Activation of gtp hydrolysis in mrna-trna translocation
by elongation factor g . SNAP output
|
3ja1
|
ribosome |
cryo-EM (3.6 Å) |
Li W, Liu Z, Koripella RK, Langlois R, Sanyal S,
Frank J |
(2015) "Activation
of GTP hydrolysis in mRNA-tRNA translocation by
elongation factor G." Sci Adv,
1, e1500169. doi: 10.1126/sciadv.1500169.
|
Activation of gtp hydrolysis in mrna-trna translocation
by elongation factor g . SNAP output
|
3jam
|
translation |
cryo-EM (3.46 Å) |
Llacer JL, Hussain T, Marler L, Aitken CE, Thakur A,
Lorsch JR, Hinnebusch AG, Ramakrishnan V |
(2015) "Conformational
Differences between Open and Closed States of the
Eukaryotic Translation Initiation Complex."
Mol.Cell, 59, 399-412. doi:
10.1016/j.molcel.2015.06.033.
|
Cryoem structure of 40s-eif1a-eif1 complex from yeast .
SNAP output
|
3jap
|
translation |
cryo-EM (4.9 Å) |
Llacer JL, Hussain T, Marler L, Aitken CE, Thakur A,
Lorsch JR, Hinnebusch AG, Ramakrishnan V |
(2015) "Conformational
Differences between Open and Closed States of the
Eukaryotic Translation Initiation Complex."
Mol.Cell, 59, 399-412. doi:
10.1016/j.molcel.2015.06.033.
|
Structure of a partial yeast 48s preinitiation complex
in closed conformation . SNAP output
|
3jb7
|
transferase-viral protein-RNA |
cryo-EM (4.0 Å) |
Zhang X, Ding K, Yu X, Chang W, Sun J, Hong Zhou
Z |
(2015) "In situ
structures of the segmented genome and RNA polymerase
complex inside a dsRNA virus." Nature,
527, 531-534. doi: 10.1038/nature15767.
|
In situ structures of the segmented genome and RNA
polymerase complex inside a dsrna virus . SNAP output
|
3jb9
|
RNA binding protein-RNA |
cryo-EM (3.6 Å) |
Yan C, Hang J, Wan R, Huang M, Wong C, Shi Y |
(2015) "Structure
of a yeast spliceosome at 3.6-angstrom resolution."
Science, 349, 1182-1191. doi:
10.1126/science.aac7629.
|
cryo-EM structure of the yeast spliceosome at 3.6
angstrom resolution . SNAP output
|
3jbn
|
ribosome |
cryo-EM (4.7 Å) |
Sun M, Li W, Blomqvist K, Das S, Hashem Y, Dvorin JD,
Frank J |
(2015) "Dynamical
features of the Plasmodium falciparum ribosome during
translation." Nucleic Acids Res.,
43, 10515-10524. doi: 10.1093/nar/gkv991.
|
Cryo-electron microscopy reconstruction of the
plasmodium falciparum 80s ribosome bound to p-trna .
SNAP output
|
3jbo
|
ribosome |
cryo-EM (5.8 Å) |
Sun M, Li W, Blomqvist K, Das S, Hashem Y, Dvorin JD,
Frank J |
(2015) "Dynamical
features of the Plasmodium falciparum ribosome during
translation." Nucleic Acids Res.,
43, 10515-10524. doi: 10.1093/nar/gkv991.
|
Cryo-electron microscopy reconstruction of the
plasmodium falciparum 80s ribosome bound to p-e-trna .
SNAP output
|
3jbp
|
ribosome |
cryo-EM (6.7 Å) |
Sun M, Li W, Blomqvist K, Das S, Hashem Y, Dvorin JD,
Frank J |
(2015) "Dynamical
features of the Plasmodium falciparum ribosome during
translation." Nucleic Acids Res.,
43, 10515-10524. doi: 10.1093/nar/gkv991.
|
Cryo-electron microscopy reconstruction of the
plasmodium falciparum 80s ribosome bound to e-trna .
SNAP output
|
3jbu
|
ribosome |
cryo-EM (3.64 Å) |
Zhang J, Pan X, Yan K, Sun S, Gao N, Sui SF |
(2015) "Mechanisms
of ribosome stalling by SecM at multiple elongation
steps." Elife, 4. doi:
10.7554/eLife.09684.
|
Mechanisms of ribosome stalling by secm at multiple
elongation steps . SNAP
output
|
3jbv
|
ribosome |
cryo-EM (3.32 Å) |
Zhang J, Pan X, Yan K, Sun S, Gao N, Sui SF |
(2015) "Mechanisms
of ribosome stalling by SecM at multiple elongation
steps." Elife, 4. doi:
10.7554/eLife.09684.
|
Mechanisms of ribosome stalling by secm at multiple
elongation steps . SNAP
output
|
3jcd
|
ribosome |
cryo-EM (3.7 Å) |
Zhang D, Yan K, Liu G, Song G, Luo J, Shi Y, Cheng E,
Wu S, Jiang T, Lou J, Gao N, Qin Y |
(2016) "EF4
disengages the peptidyl-tRNA CCA end and facilitates
back-translocation on the 70S ribosome." Nat.
Struct. Mol. Biol., 23, 125-131.
doi: 10.1038/nsmb.3160.
|
Structure of escherichia coli ef4 in
posttranslocational ribosomes (post ef4) . SNAP output
|
3jce
|
ribosome |
cryo-EM (3.2 Å) |
Zhang D, Yan K, Liu G, Song G, Luo J, Shi Y, Cheng E,
Wu S, Jiang T, Lou J, Gao N, Qin Y |
(2016) "EF4
disengages the peptidyl-tRNA CCA end and facilitates
back-translocation on the 70S ribosome." Nat.
Struct. Mol. Biol., 23, 125-131.
doi: 10.1038/nsmb.3160.
|
Structure of escherichia coli ef4 in pretranslocational
ribosomes (pre ef4) . SNAP output
|
3jcj
|
ribosome |
cryo-EM (3.7 Å) |
Sprink T, Ramrath DJ, Yamamoto H, Yamamoto K, Loerke
J, Ismer J, Hildebrand PW, Scheerer P, Burger J, Mielke
T, Spahn CM |
(2016) "Structures
of ribosome-bound initiation factor 2 reveal the
mechanism of subunit association." Sci
Adv, 2, e1501502. doi: 10.1126/sciadv.1501502.
|
Structures of ribosome-bound initiation factor 2 reveal
the mechanism of subunit association . SNAP output
|
3jcm
|
transcription |
cryo-EM (3.8 Å) |
Wan R, Yan C, Bai R, Wang L, Huang M, Wong CC, Shi
Y |
(2016) "The 3.8
angstrom structure of the U4/U6.U5 tri-snRNP: Insights
into spliceosome assembly and catalysis."
Science, 351, 466-475. doi:
10.1126/science.aad6466.
|
cryo-EM structure of the spliceosomal u4-u6.u5
tri-snrnp . SNAP
output
|
3jcn
|
ribosome |
cryo-EM (4.6 Å) |
Sprink T, Ramrath DJ, Yamamoto H, Yamamoto K, Loerke
J, Ismer J, Hildebrand PW, Scheerer P, Burger J, Mielke
T, Spahn CM |
(2016) "Structures
of ribosome-bound initiation factor 2 reveal the
mechanism of subunit association." Sci
Adv, 2, e1501502. doi: 10.1126/sciadv.1501502.
|
Structures of ribosome-bound initiation factor 2 reveal
the mechanism of subunit association: initiation
complex i . SNAP
output
|
3jcs
|
ribosome |
cryo-EM (2.8 Å) |
Shalev-Benami M, Zhang Y, Matzov D, Halfon Y, Zackay
A, Rozenberg H, Zimmerman E, Bashan A, Jaffe CL, Yonath
A, Skiniotis G |
(2016) "2.8-
angstrom Cryo-EM Structure of the Large Ribosomal
Subunit from the Eukaryotic Parasite Leishmania."
Cell Rep, 16, 288-294. doi:
10.1016/j.celrep.2016.06.014.
|
2.8 angstrom cryo-EM structure of the large ribosomal
subunit from the eukaryotic parasite leishmania .
SNAP output
|
3jct
|
ribosome |
cryo-EM (3.08 Å) |
Wu S, Tutuncuoglu B, Yan K, Brown H, Zhang Y, Tan D,
Gamalinda M, Yuan Y, Li Z, Jakovljevic J, Ma C, Lei J,
Dong MQ, Woolford JL, Gao N |
(2016) "Diverse
roles of assembly factors revealed by structures of
late nuclear pre-60S ribosomes." Nature,
534, 133-137. doi: 10.1038/nature17942.
|
cryo-EM structure of eukaryotic pre-60s ribosomal
subunits . SNAP
output
|
3jd5
|
ribosome |
cryo-EM (7.0 Å) |
Kaushal PS, Sharma MR, Booth TM, Haque EM, Tung CS,
Sanbonmatsu KY, Spremulli LL, Agrawal RK |
(2014) "Cryo-EM
structure of the small subunit of the mammalian
mitochondrial ribosome."
Proc.Natl.Acad.Sci.USA, 111,
7284-7289. doi: 10.1073/pnas.1401657111.
|
cryo-EM structure of the small subunit of the mammalian
mitochondrial ribosome . SNAP output
|
3k0j
|
RNA-RNA binding protein |
X-ray (3.1 Å) |
Kulshina N, Edwards TE, Ferre-D'Amare AR |
(2010) "Thermodynamic
analysis of ligand binding and ligand binding-induced
tertiary structure formation by the thiamine
pyrophosphate riboswitch." Rna,
16, 186-196. doi: 10.1261/rna.1847310.
|
Crystal structure of the e. coli thim riboswitch in
complex with thiamine pyrophosphate and the u1a
crystallization module . SNAP output
|
3k49
|
RNA binding protein - RNA |
X-ray (2.5 Å) |
Zhu D, Stumpf CR, Krahn JM, Wickens M, Hall TM |
(2009) "A 5'
cytosine binding pocket in Puf3p specifies regulation
of mitochondrial mRNAs."
Proc.Natl.Acad.Sci.USA, 106,
20192-20197. doi: 10.1073/pnas.0812079106.
|
Puf3 RNA binding domain bound to cox17 RNA 3' utr
recognition sequence site b . SNAP output
|
3k4e
|
RNA binding protein - RNA |
X-ray (3.2 Å) |
Zhu D, Stumpf CR, Krahn JM, Wickens M, Hall TM |
(2009) "A 5'
cytosine binding pocket in Puf3p specifies regulation
of mitochondrial mRNAs."
Proc.Natl.Acad.Sci.USA, 106,
20192-20197. doi: 10.1073/pnas.0812079106.
|
Puf3 RNA binding domain bound to cox17 RNA 3' utr
recognition sequence site a . SNAP output
|
3k5q
|
RNA-RNA binding protein |
X-ray (2.2 Å) |
Wang Y, Opperman L, Wickens M, Hall TM |
(2009) "Structural
basis for specific recognition of multiple mRNA targets
by a PUF regulatory protein."
Proc.Natl.Acad.Sci.USA, 106,
20186-20191. doi: 10.1073/pnas.0812076106.
|
Crystal structure of fbf-2-fbe complex . SNAP output
|
3k5y
|
RNA-RNA binding protein |
X-ray (2.3 Å) |
Wang Y, Opperman L, Wickens M, Hall TM |
(2009) "Structural
basis for specific recognition of multiple mRNA targets
by a PUF regulatory protein."
Proc.Natl.Acad.Sci.USA, 106,
20186-20191. doi: 10.1073/pnas.0812076106.
|
Crystal structure of fbf-2-gld-1 fbea complex .
SNAP output
|
3k5z
|
RNA-RNA binding protein |
X-ray (2.4 Å) |
Wang Y, Opperman L, Wickens M, Hall TM |
(2009) "Structural
basis for specific recognition of multiple mRNA targets
by a PUF regulatory protein."
Proc.Natl.Acad.Sci.USA, 106,
20186-20191. doi: 10.1073/pnas.0812076106.
|
Crystal structure of fbf-2-gld-1 fbea g4a mutant
complex . SNAP
output
|
3k61
|
RNA-RNA binding protein |
X-ray (2.21 Å) |
Wang Y, Opperman L, Wickens M, Hall TM |
(2009) "Structural
basis for specific recognition of multiple mRNA targets
by a PUF regulatory protein."
Proc.Natl.Acad.Sci.USA, 106,
20186-20191. doi: 10.1073/pnas.0812076106.
|
Crystal structure of fbf-2-fog-1 fbea complex .
SNAP output
|
3k62
|
RNA-RNA binding protein |
X-ray (1.9 Å) |
Wang Y, Opperman L, Wickens M, Hall TM |
(2009) "Structural
basis for specific recognition of multiple mRNA targets
by a PUF regulatory protein."
Proc.Natl.Acad.Sci.USA, 106,
20186-20191. doi: 10.1073/pnas.0812076106.
|
Crystal structure of fbf-2-gld-1 fbeb complex .
SNAP output
|
3k64
|
RNA-RNA binding protein |
X-ray (2.0 Å) |
Wang Y, Opperman L, Wickens M, Hall TM |
(2009) "Structural
basis for specific recognition of multiple mRNA targets
by a PUF regulatory protein."
Proc.Natl.Acad.Sci.USA, 106,
20186-20191. doi: 10.1073/pnas.0812076106.
|
Crystal structure of fbf-2-fem-3 pme complex . SNAP output
|
3kfu
|
ligase-RNA |
X-ray (3.0 Å) |
Blaise M, Bailly M, Frechin M, Behrens MA, Fischer F,
Oliveira CL, Becker HD, Pedersen JS, Thirup S, Kern
D |
(2010) "Crystal
structure of a transfer-ribonucleoprotein particle that
promotes asparagine formation." Embo J.,
29, 3118-3129. doi: 10.1038/emboj.2010.192.
|
Crystal structure of the transamidosome . SNAP output
|
3klv
|
transferase-RNA |
X-ray (2.6 Å) |
Ferrer-Orta C, Sierra M, Agudo R, de la Higuera I,
Arias A, Perez-Luque R, Escarmis C, Domingo E, Verdaguer
N |
(2010) "Structure
of foot-and-mouth disease virus mutant polymerases with
reduced sensitivity to ribavirin."
J.Virol., 84, 6188-6199. doi:
10.1128/JVI.02420-09.
|
M296i g62s mutant of foot-and-mouth disease virus
RNA-polymerase in complex with a template- primer RNA .
SNAP output
|
3kmq
|
transferase-RNA |
X-ray (2.11 Å) |
Ferrer-Orta C, Sierra M, Agudo R, de la Higuera I,
Arias A, Perez-Luque R, Escarmis C, Domingo E, Verdaguer
N |
(2010) "Structure
of foot-and-mouth disease virus mutant polymerases with
reduced sensitivity to ribavirin."
J.Virol., 84, 6188-6199. doi:
10.1128/JVI.02420-09.
|
G62s mutant of foot-and-mouth disease virus
RNA-polymerase in complex with a template- primer RNA,
tetragonal structure . SNAP output
|
3kms
|
transferase-RNA |
X-ray (2.2 Å) |
Ferrer-Orta C, Sierra M, Agudo R, de la Higuera I,
Arias A, Perez-Luque R, Escarmis C, Domingo E, Verdaguer
N |
(2010) "Structure
of foot-and-mouth disease virus mutant polymerases with
reduced sensitivity to ribavirin."
J.Virol., 84, 6188-6199. doi:
10.1128/JVI.02420-09.
|
G62s mutant of foot-and-mouth disease virus
RNA-polymerase in complex with a template- primer RNA
trigonal structure . SNAP output
|
3kna
|
transferase-RNA |
X-ray (2.8 Å) |
Ferrer-Orta C, Sierra M, Agudo R, de la Higuera I,
Arias A, Perez-Luque R, Escarmis C, Domingo E, Verdaguer
N |
(2010) "Structure
of foot-and-mouth disease virus mutant polymerases with
reduced sensitivity to ribavirin."
J.Virol., 84, 6188-6199. doi:
10.1128/JVI.02420-09.
|
M296i mutant of foot-and-mouth disease virus
RNA-polymerase in complex with a template- primer RNA .
SNAP output
|
3koa
|
transferase-RNA |
X-ray (2.4 Å) |
Ferrer-Orta C, Sierra M, Agudo R, de la Higuera I,
Arias A, Perez-Luque R, Escarmis C, Domingo E, Verdaguer
N |
(2010) "Structure
of foot-and-mouth disease virus mutant polymerases with
reduced sensitivity to ribavirin."
J.Virol., 84, 6188-6199. doi:
10.1128/JVI.02420-09.
|
M296i mutant of foot-and-mouth disease virus
RNA-polymerase in complex with a template- primer RNA
and gtp . SNAP
output
|
3ks8
|
viral protein-RNA |
X-ray (2.401 Å) |
Kimberlin CR, Bornholdt ZA, Li S, Woods VL, Macrae
IJ, Saphire EO |
(2009) "Ebolavirus
VP35 uses a bimodal strategy to bind dsRNA for innate
immune suppression."
Proc.Natl.Acad.Sci.USA, 107,
314-319. doi: 10.1073/pnas.0910547107.
|
Crystal structure of reston ebolavirus vp35 RNA binding
domain in complex with 18bp dsrna . SNAP output
|
3ktv
|
RNA-RNA binding protein |
X-ray (3.8 Å) |
Wild K, Bange G, Bozkurt G, Segnitz B, Hendricks A,
Sinning I |
(2010) "Structural
insights into the assembly of the human and archaeal
signal recognition particles." Acta
Crystallogr.,Sect.D, 66, 295-303.
doi: 10.1107/S0907444910000879.
|
Crystal structure of the human srp19-s-domain srp RNA
complex . SNAP
output
|
3ktw
|
RNA-RNA binding protein |
X-ray (3.2 Å) |
Wild K, Bange G, Bozkurt G, Segnitz B, Hendricks A,
Sinning I |
(2010) "Structural
insights into the assembly of the human and archaeal
signal recognition particles." Acta
Crystallogr.,Sect.D, 66, 295-303.
doi: 10.1107/S0907444910000879.
|
Crystal structure of the srp19-s-domain srp RNA complex
of sulfolobus solfataricus . SNAP output
|
3l25
|
RNA binding protein-RNA |
X-ray (2.0 Å) |
Leung DW, Prins KC, Borek DM, Farahbakhsh M,
Tufariello JM, Ramanan P, Nix JC, Helgeson LA, Otwinowski
Z, Honzatko RB, Basler CF, Amarasinghe GK |
(2010) "Structural
basis for dsRNA recognition and interferon antagonism
by Ebola VP35." Nat.Struct.Mol.Biol.,
17, 165-172. doi: 10.1038/nsmb.1765.
|
Crystal structure of zaire ebola vp35 interferon
inhibitory domain bound to 8 bp dsrna . SNAP output
|
3l26
|
RNA binding protein-RNA |
X-ray (2.4 Å) |
Leung DW, Prins KC, Borek DM, Farahbakhsh M,
Tufariello JM, Ramanan P, Nix JC, Helgeson LA, Otwinowski
Z, Honzatko RB, Basler CF, Amarasinghe GK |
(2010) "Structural
basis for dsRNA recognition and interferon antagonism
by Ebola VP35." Nat.Struct.Mol.Biol.,
17, 165-172. doi: 10.1038/nsmb.1765.
|
Crystal structure of zaire ebola vp35 interferon
inhibitory domain bound to 8 bp dsrna . SNAP output
|
3l3c
|
RNA binding protein-RNA |
X-ray (2.85 Å) |
Cochrane JC, Lipchock SV, Smith KD, Strobel SA |
(2009) "Structural
and chemical basis for glucosamine 6-phosphate binding
and activation of the glmS ribozyme."
Biochemistry, 48, 3239-3246.
doi: 10.1021/bi802069p.
|
Crystal structure of the bacillus anthracis glms
ribozyme bound to glc6p . SNAP output
|
3lob
|
virus |
X-ray (3.6 Å) |
Banerjee M, Speir JA, Kwan MH, Huang R, Aryanpur PP,
Bothner B, Johnson JE |
(2010) "Structure
and function of a genetically engineered mimic of a
nonenveloped virus entry intermediate."
J.Virol., 84, 4737-4746. doi:
10.1128/JVI.02670-09.
|
Crystal structure of flock house virus calcium mutant .
SNAP output
|
3lqx
|
RNA-RNA binding protein |
X-ray (1.93 Å) |
Batey RT, Doudna JA |
(2002) "Structural
and Energetic Analysis of Metal Ions Essential to SRP
Signal Recognition Domain Assembly."
Biochemistry, 41,
11703-11710.
|
Srp ribonucleoprotein core complexed with cobalt
hexammine . SNAP
output
|
3lrn
|
hydrolase-RNA |
X-ray (2.6 Å) |
Lu C, Xu H, Ranjith-Kumar CT, Brooks MT, Hou TY, Hu
F, Herr AB, Strong RK, Kao CC, Li P |
(2010) "The
Structural Basis of 5' Triphosphate Double-Stranded RNA
Recognition by RIG-I C-Terminal Domain."
Structure, 18, 1032-1043.
doi: 10.1016/j.str.2010.05.007.
|
Crystal structure of human rig-i ctd bound to a 14 bp
gc 5' ppp dsrna . SNAP
output
|
3lrr
|
hydrolase-RNA |
X-ray (2.15 Å) |
Lu C, Xu H, Ranjith-Kumar CT, Brooks MT, Hou TY, Hu
F, Herr AB, Strong RK, Kao CC, Li P |
(2010) "The
Structural Basis of 5' Triphosphate Double-Stranded RNA
Recognition by RIG-I C-Terminal Domain."
Structure, 18, 1032-1043.
doi: 10.1016/j.str.2010.05.007.
|
Crystal structure of human rig-i ctd bound to a 12 bp
au rich 5' ppp dsrna . SNAP output
|
3lwo
|
isomerase-RNA binding protein-RNA |
X-ray (2.855 Å) |
Zhou J, Lv C, Liang B, Chen M, Yang W, Li H |
(2010) "Glycosidic
bond conformation preference plays a pivotal role in
catalysis of RNA pseudouridylation: a combined
simulation and structural study."
J.Mol.Biol., 401, 690-695.
doi: 10.1016/j.jmb.2010.06.061.
|
Structure of h-aca rnp bound to a substrate RNA
containing 5bru . SNAP
output
|
3lwp
|
isomerase-RNA binding protein-RNA |
X-ray (2.5 Å) |
Zhou J, Lv C, Liang B, Chen M, Yang W, Li H |
(2010) "Glycosidic
bond conformation preference plays a pivotal role in
catalysis of RNA pseudouridylation: a combined
simulation and structural study."
J.Mol.Biol., 401, 690-695.
doi: 10.1016/j.jmb.2010.06.061.
|
Structure of h-aca rnp bound to a substrate RNA
containing 5brdu . SNAP
output
|
3lwq
|
isomerase-RNA binding protein-RNA |
X-ray (2.678 Å) |
Zhou J, Liang B, Li H |
(2010) "Functional
and Structural Impact of Target Uridine Substitutions
on the H/ACA Ribonucleoprotein Particle Pseudouridine
Synthase ." Biochemistry,
49, 6276-6281. doi: 10.1021/bi1006699.
|
Structure of h-aca rnp bound to a substrate RNA
containing 3mu . SNAP
output
|
3lwr
|
isomerase-RNA binding protein-RNA |
X-ray (2.203 Å) |
Zhou J, Liang B, Li H |
(2010) "Functional
and Structural Impact of Target Uridine Substitutions
on the H/ACA Ribonucleoprotein Particle Pseudouridine
Synthase ." Biochemistry,
49, 6276-6281. doi: 10.1021/bi1006699.
|
Structure of h-aca rnp bound to a substrate RNA
containing 4su . SNAP
output
|
3lwv
|
isomerase-RNA binding protein-RNA |
X-ray (2.499 Å) |
Zhou J, Liang B, Li H |
(2010) "Functional
and Structural Impact of Target Uridine Substitutions
on the H/ACA Ribonucleoprotein Particle Pseudouridine
Synthase ." Biochemistry,
49, 6276-6281. doi: 10.1021/bi1006699.
|
Structure of h-aca rnp bound to a substrate RNA
containing 2'-deoxyuridine . SNAP output
|
3m7n
|
hydrolase-RNA |
X-ray (2.4 Å) |
Hartung S, Niederberger T, Hartung M, Tresch A,
Hopfner K-P |
(2010) "Quantitative
analysis of processive RNA degradation by the archaeal
RNA exosome." Nucleic Acids Res.,
38, 5166-5176. doi: 10.1093/nar/gkq238.
|
Archaeoglobus fulgidus exosome with RNA bound to the
active site . SNAP
output
|
3m85
|
hydrolase-RNA |
X-ray (3.0 Å) |
Hartung S, Niederberger T, Hartung M, Tresch A,
Hopfner K-P |
(2010) "Quantitative
analysis of processive RNA degradation by the archaeal
RNA exosome." Nucleic Acids Res.,
38, 5166-5176. doi: 10.1093/nar/gkq238.
|
Archaeoglobus fulgidus exosome y70a with RNA bound to
the active site . SNAP
output
|
3mdg
|
RNA binding-RNA |
X-ray (2.22 Å) |
Yang Q, Gilmartin GM, Doublie S |
(2010) "Structural
basis of UGUA recognition by the Nudix protein CFI(m)25
and implications for a regulatory role in mRNA 3'
processing." Proc.Natl.Acad.Sci.USA,
107, 10062-10067. doi: 10.1073/pnas.1000848107.
|
Crystal structure of the 25kda subunit of human
cleavage factor im in complex with RNA uuguau .
SNAP output
|
3mdi
|
RNA binding-RNA |
X-ray (2.07 Å) |
Yang Q, Gilmartin GM, Doublie S |
(2010) "Structural
basis of UGUA recognition by the Nudix protein CFI(m)25
and implications for a regulatory role in mRNA 3'
processing." Proc.Natl.Acad.Sci.USA,
107, 10062-10067. doi: 10.1073/pnas.1000848107.
|
Crystal structure of the 25kda subunit of human
cleavage factor im in complex with RNA uguaaa .
SNAP output
|
3mj0
|
RNA-RNA binding protein |
X-ray (2.306 Å) |
Huang Y, Ding L, Ma J |
"Crystal Structure of drosophila Ago2 PAZ domain in
complex with 3'-end 2'-O-methylated RNA." |
Crystal structure of drosophia ago-paz domain in
complex with 3'-end 2'-o-methylated RNA . SNAP output
|
3moj
|
RNA binding protein-RNA |
X-ray (2.902 Å) |
Hardin JW, Hu YX, McKay DB |
(2010) "Structure
of the RNA binding domain of a DEAD-box helicase bound
to its ribosomal RNA target reveals a novel mode of
recognition by an RNA recognition motif."
J.Mol.Biol., 402, 412-427.
doi: 10.1016/j.jmb.2010.07.040.
|
Structure of the RNA binding domain of the bacillus
subtilis yxin protein complexed with a fragment of 23s
ribosomal RNA . SNAP
output
|
3mqk
|
isomerase-RNA binding protein-RNA |
X-ray (2.8 Å) |
Zhou J, Liang B, Li H |
(2011) "Structural
and functional evidence of high specificity of Cbf5 for
ACA trinucleotide." Rna,
17, 244-250. doi: 10.1261/rna.2415811.
|
Cbf5-nop10-gar1 complex binding with 17mer RNA
containing aca trinucleotide . SNAP output
|
3mum
|
RNA binding protein-RNA |
X-ray (2.9 Å) |
Smith KD, Lipchock SV, Livingston AL, Shanahan CA,
Strobel SA |
(2010) "Structural
and biochemical determinants of ligand binding by the
c-di-GMP riboswitch ." Biochemistry,
49, 7351-7359. doi: 10.1021/bi100671e.
|
Crystal structure of the g20a mutant c-di-gmp riboswith
bound to c-di-gmp . SNAP
output
|
3mur
|
RNA binding protein-RNA |
X-ray (3.0 Å) |
Smith KD, Lipchock SV, Livingston AL, Shanahan CA,
Strobel SA |
(2010) "Structural
and biochemical determinants of ligand binding by the
c-di-GMP riboswitch ." Biochemistry,
49, 7351-7359. doi: 10.1021/bi100671e.
|
Crystal structure of the c92u mutant c-di-gmp riboswith
bound to c-di-gmp . SNAP
output
|
3mut
|
RNA binding protein-RNA |
X-ray (3.0 Å) |
Smith KD, Lipchock SV, Livingston AL, Shanahan CA,
Strobel SA |
(2010) "Structural
and biochemical determinants of ligand binding by the
c-di-GMP riboswitch ." Biochemistry,
49, 7351-7359. doi: 10.1021/bi100671e.
|
Crystal structure of the g20a-c92u mutant c-di-gmp
riboswith bound to c-di-gmp . SNAP output
|
3muv
|
RNA binding protein-RNA |
X-ray (3.2 Å) |
Smith KD, Lipchock SV, Livingston AL, Shanahan CA,
Strobel SA |
(2010) "Structural
and biochemical determinants of ligand binding by the
c-di-GMP riboswitch ." Biochemistry,
49, 7351-7359. doi: 10.1021/bi100671e.
|
Crystal structure of the g20a-c92u mutant c-di-gmp
riboswith bound to c-di-amp . SNAP output
|
3mxh
|
RNA binding protein-RNA |
X-ray (2.3 Å) |
Smith KD, Lipchock SV, Livingston AL, Shanahan CA,
Strobel SA |
(2010) "Structural
and biochemical determinants of ligand binding by the
c-di-GMP riboswitch ." Biochemistry,
49, 7351-7359. doi: 10.1021/bi100671e.
|
Native structure of a c-di-gmp riboswitch from v.
cholerae . SNAP
output
|
3ncu
|
RNA binding protein-RNA |
X-ray (2.55 Å) |
Wang Y, Ludwig J, Schuberth C, Goldeck M, Schlee M,
Li H, Juranek S, Sheng G, Micura R, Tuschl T, Hartmann G,
Patel DJ |
(2010) "Structural
and functional insights into 5'-ppp RNA pattern
recognition by the innate immune receptor RIG-I."
Nat.Struct.Mol.Biol., 17,
781-787. doi: 10.1038/nsmb.1863.
|
Structural and functional insights into pattern
recognition by the innate immune receptor rig-i .
SNAP output
|
3ndb
|
signaling protein-RNA |
X-ray (3.0 Å) |
Hainzl T, Huang S, Merilainen G, Brannstrom K,
Sauer-Eriksson AE |
(2011) "Structural
basis of signal-sequence recognition by the signal
recognition particle."
Nat.Struct.Mol.Biol., 18,
389-391. doi: 10.1038/nsmb.1994.
|
Crystal structure of a signal sequence bound to the
signal recognition particle . SNAP output
|
3nl0
|
transferase-RNA |
X-ray (2.6 Å) |
Agudo R, Ferrer-Orta C, Arias A, de la Higuera I,
Perales C, Perez-Luque R, Verdaguer N, Domingo E |
(2010) "A
multi-step process of viral adaptation to a mutagenic
nucleoside analogue by modulation of transition types
leads to extinction-escape." Plos Pathog.,
6, e1001072. doi: 10.1371/journal.ppat.1001072.
|
Mutant p44s m296i of foot-and-mouth disease virus
RNA-dependent RNA polymerase . SNAP output
|
3nma
|
transferase-RNA |
X-ray (2.6 Å) |
Agudo R, Ferrer-Orta C, Arias A, de la Higuera I,
Perales C, Perez-Luque R, Verdaguer N, Domingo E |
(2010) "A
multi-step process of viral adaptation to a mutagenic
nucleoside analogue by modulation of transition types
leads to extinction-escape." Plos Pathog.,
6, e1001072. doi: 10.1371/journal.ppat.1001072.
|
Mutant p169s of foot-and-mouth disease virus RNA
dependent RNA-polymerase . SNAP output
|
3nmr
|
RNA binding protein-RNA |
X-ray (1.85 Å) |
Teplova M, Song J, Gaw HY, Teplov A, Patel DJ |
(2010) "Structural
Insights into RNA Recognition by the Alternate-Splicing
Regulator CUG-Binding Protein 1."
Structure, 18, 1364-1377.
doi: 10.1016/j.str.2010.06.018.
|
Crystal structure of cugbp1 rrm1-2-RNA complex .
SNAP output
|
3nmu
|
transferase-RNA |
X-ray (2.729 Å) |
Xue S, Wang R, Yang F, Terns RM, Terns MP, Zhang X,
Maxwell ES, Li H |
(2010) "Structural
basis for substrate placement by an archaeal box C/D
ribonucleoprotein particle." Mol.Cell,
39, 939-949. doi: 10.1016/j.molcel.2010.08.022.
|
Crystal structure of substrate-bound halfmer box c-d
rnp . SNAP output
|
3nna
|
RNA binding protein-RNA |
X-ray (1.899 Å) |
Teplova M, Song J, Gaw HY, Teplov A, Patel DJ |
(2010) "Structural
Insights into RNA Recognition by the Alternate-Splicing
Regulator CUG-Binding Protein 1."
Structure, 18, 1364-1377.
doi: 10.1016/j.str.2010.06.018.
|
Crystal structure of cugbp1 rrm1-2-RNA complex .
SNAP output
|
3nnc
|
RNA binding protein-RNA |
X-ray (2.2 Å) |
Teplova M, Song J, Gaw HY, Teplov A, Patel DJ |
(2010) "Structural
Insights into RNA Recognition by the Alternate-Splicing
Regulator CUG-Binding Protein 1."
Structure, 18, 1364-1377.
doi: 10.1016/j.str.2010.06.018.
|
Crystal structure of cugbp1 rrm1-2-RNA complex .
SNAP output
|
3nnh
|
RNA binding protein-RNA |
X-ray (2.75 Å) |
Teplova M, Song J, Gaw HY, Teplov A, Patel DJ |
(2010) "Structural
Insights into RNA Recognition by the Alternate-Splicing
Regulator CUG-Binding Protein 1."
Structure, 18, 1364-1377.
doi: 10.1016/j.str.2010.06.018.
|
Crystal structure of the cugbp1 rrm1 with guuguuuuguuu
RNA . SNAP output
|
3nvi
|
transferase-RNA |
X-ray (2.709 Å) |
Xue S, Wang R, Yang F, Terns RM, Terns MP, Zhang X,
Maxwell ES, Li H |
(2010) "Structural
basis for substrate placement by an archaeal box C/D
ribonucleoprotein particle." Mol.Cell,
39, 939-949. doi: 10.1016/j.molcel.2010.08.022.
|
Structure of n-terminal truncated nop56-58 bound with
l7ae and box c-d RNA . SNAP output
|
3nvk
|
transferase-RNA |
X-ray (3.209 Å) |
Xue S, Wang R, Yang F, Terns RM, Terns MP, Zhang X,
Maxwell ES, Li H |
(2010) "Structural
basis for substrate placement by an archaeal box C/D
ribonucleoprotein particle." Mol.Cell,
39, 939-949. doi: 10.1016/j.molcel.2010.08.022.
|
Structural basis for substrate placement by an archaeal
box c-d ribonucleoprotein particle . SNAP output
|
3o3i
|
RNA binding protein |
X-ray (2.801 Å) |
Tian Y, Simanshu DK, Ma JB, Patel DJ |
(2011) "Inaugural
Article: Structural basis for piRNA 2'-O-methylated
3'-end recognition by Piwi PAZ (Piwi/Argonaute/Zwille)
domains." Proc.Natl.Acad.Sci.USA,
108, 903-910. doi: 10.1073/pnas.1017762108.
|
Crystal structure of human hiwi1 paz domain (residues
277-399) in complex with 14-mer RNA (12-bp + 2-nt
overhang) containing 2'-oh at its 3'-end . SNAP output
|
3o6e
|
RNA binding protein-RNA |
X-ray (2.904 Å) |
Tian Y, Simanshu DK, Ma JB, Patel DJ |
(2011) "Inaugural
Article: Structural basis for piRNA 2'-O-methylated
3'-end recognition by Piwi PAZ (Piwi/Argonaute/Zwille)
domains." Proc.Natl.Acad.Sci.USA,
108, 903-910. doi: 10.1073/pnas.1017762108.
|
Crystal structure of human hiwi1 paz domain (residues
277-399) in complex with 14-mer RNA (12-bp + 2-nt
overhang) containing 2'-och3 at its 3'-end . SNAP output
|
3o7v
|
RNA binding protein-RNA |
X-ray (2.1 Å) |
Tian Y, Simanshu DK, Ma JB, Patel DJ |
(2011) "Inaugural
Article: Structural basis for piRNA 2'-O-methylated
3'-end recognition by Piwi PAZ (Piwi/Argonaute/Zwille)
domains." Proc.Natl.Acad.Sci.USA,
108, 903-910. doi: 10.1073/pnas.1017762108.
|
Crystal structure of human hiwi1 (v361m) paz domain
(residues 277-399) in complex with 14-mer RNA (12-bp +
2-nt overhang) containing 2'-och3 at its 3'-end .
SNAP output
|
3o8c
|
hydrolase-RNA |
X-ray (2.0 Å) |
Appleby TC, Anderson R, Fedorova O, Pyle AM, Wang R,
Liu X, Brendza KM, Somoza JR |
(2011) "Visualizing
ATP-Dependent RNA Translocation by the NS3 Helicase
from HCV." J.Mol.Biol.,
405, 1139-1153. doi: 10.1016/j.jmb.2010.11.034.
|
Visualizing atp-dependent RNA translocation by the ns3
helicase from hcv . SNAP
output
|
3o8r
|
hydrolase-RNA |
X-ray (2.304 Å) |
Appleby TC, Anderson R, Fedorova O, Pyle AM, Wang R,
Liu X, Brendza KM, Somoza JR |
(2011) "Visualizing
ATP-Dependent RNA Translocation by the NS3 Helicase
from HCV." J.Mol.Biol.,
405, 1139-1153. doi: 10.1016/j.jmb.2010.11.034.
|
Visualizing atp-dependent RNA translocation by the ns3
helicase from hcv . SNAP
output
|
3og8
|
hydrolase-RNA |
X-ray (2.4 Å) |
Lu C, Ranjith-Kumar CT, Hao L, Kao CC, Li P |
(2011) "Crystal
structure of RIG-I C-terminal domain bound to
blunt-ended double-strand RNA without 5'
triphosphate." Nucleic Acids Res.,
39, 1565-1575. doi: 10.1093/nar/gkq974.
|
Crystal structure of human rig-i ctd bound to a 14-bp
blunt-ended dsrna . SNAP
output
|
3oij
|
ribosomal protein |
X-ray (3.0 Å) |
Thomas SR, Keller CA, Szyk A, Cannon JR,
Laronde-Leblanc NA |
(2011) "Structural
insight into the functional mechanism of Nep1/Emg1
N1-specific pseudouridine methyltransferase in ribosome
biogenesis." Nucleic Acids Res.,
39, 2445-2457. doi: 10.1093/nar/gkq1131.
|
Crystal structure of saccharomyces cerevisiae nep1-emg1
bound to s-adenosylhomocysteine and 2 molecules of
cognate RNA . SNAP
output
|
3oin
|
ribosomal protein |
X-ray (1.9 Å) |
Thomas SR, Keller CA, Szyk A, Cannon JR,
Laronde-Leblanc NA |
(2011) "Structural
insight into the functional mechanism of Nep1/Emg1
N1-specific pseudouridine methyltransferase in ribosome
biogenesis." Nucleic Acids Res.,
39, 2445-2457. doi: 10.1093/nar/gkq1131.
|
Crystal structure of saccharomyces cerevisiae nep1-emg1
bound to s-adenosylhomocysteine and 1 molecule of
cognate RNA . SNAP
output
|
3ol6
|
transferase-RNA |
X-ray (2.5 Å) |
Gong P, Peersen OB |
(2010) "Structural
basis for active site closure by the poliovirus
RNA-dependent RNA polymerase."
Proc.Natl.Acad.Sci.USA, 107,
22505-22510. doi: 10.1073/pnas.1007626107.
|
Poliovirus polymerase elongation complex . SNAP output
|
3ol7
|
transferase-RNA |
X-ray (2.7 Å) |
Gong P, Peersen OB |
(2010) "Structural
basis for active site closure by the poliovirus
RNA-dependent RNA polymerase."
Proc.Natl.Acad.Sci.USA, 107,
22505-22510. doi: 10.1073/pnas.1007626107.
|
Poliovirus polymerase elongation complex with ctp .
SNAP output
|
3ol8
|
transferase-RNA |
X-ray (2.75 Å) |
Gong P, Peersen OB |
(2010) "Structural
basis for active site closure by the poliovirus
RNA-dependent RNA polymerase."
Proc.Natl.Acad.Sci.USA, 107,
22505-22510. doi: 10.1073/pnas.1007626107.
|
Poliovirus polymerase elongation complex with ctp-mn .
SNAP output
|
3ol9
|
transferase-RNA |
X-ray (2.25 Å) |
Gong P, Peersen OB |
(2010) "Structural
basis for active site closure by the poliovirus
RNA-dependent RNA polymerase."
Proc.Natl.Acad.Sci.USA, 107,
22505-22510. doi: 10.1073/pnas.1007626107.
|
Poliovirus polymerase elongation complex with
3'-deoxy-ctp . SNAP
output
|
3ola
|
transferase-RNA |
X-ray (2.55 Å) |
Gong P, Peersen OB |
(2010) "Structural
basis for active site closure by the poliovirus
RNA-dependent RNA polymerase."
Proc.Natl.Acad.Sci.USA, 107,
22505-22510. doi: 10.1073/pnas.1007626107.
|
Poliovirus polymerase elongation complex with
2'-deoxy-ctp . SNAP
output
|
3olb
|
transferase-RNA |
X-ray (2.41 Å) |
Gong P, Peersen OB |
(2010) "Structural
basis for active site closure by the poliovirus
RNA-dependent RNA polymerase."
Proc.Natl.Acad.Sci.USA, 107,
22505-22510. doi: 10.1073/pnas.1007626107.
|
Poliovirus polymerase elongation complex with
2',3'-dideoxy-ctp . SNAP
output
|
3oto
|
ribosome |
X-ray (3.69 Å) |
Demirci H, Murphy F, Belardinelli R, Kelley AC,
Ramakrishnan V, Gregory ST, Dahlberg AE, Jogl G |
(2010) "Modification
of 16S ribosomal RNA by the KsgA methyltransferase
restructures the 30S subunit to optimize ribosome
function." Rna, 16,
2319-2324. doi: 10.1261/rna.2357210.
|
Crystal structure of the 30s ribosomal subunit from a
ksga mutant of thermus thermophilus (hb8) . SNAP output
|
3ouy
|
transferase-RNA |
X-ray (2.69 Å) |
Pan B, Xiong Y, Steitz TA |
(2010) "How the
CCA-Adding Enzyme Selects Adenine over Cytosine at
Position 76 of tRNA." Science,
330, 937-940. doi: 10.1126/science.1194985.
|
How the cca-adding enzyme selects adenine over cytosine
at position 76 of trna . SNAP output
|
3ov7
|
transferase-RNA |
X-ray (3.0 Å) |
Pan B, Xiong Y, Steitz TA |
(2010) "How the
CCA-Adding Enzyme Selects Adenine over Cytosine at
Position 76 of tRNA." Science,
330, 937-940. doi: 10.1126/science.1194985.
|
How the cca-adding enzyme selects adenine over cytosine
in position 76 of trna . SNAP output
|
3ova
|
transferase-RNA |
X-ray (1.98 Å) |
Pan B, Xiong Y, Steitz TA |
(2010) "How the
CCA-Adding Enzyme Selects Adenine over Cytosine at
Position 76 of tRNA." Science,
330, 937-940. doi: 10.1126/science.1194985.
|
How the cca-adding enzyme selects adenine over cytosine
in position 76 of trna . SNAP output
|
3ovb
|
transferase-RNA |
X-ray (1.95 Å) |
Pan B, Xiong Y, Steitz TA |
(2010) "How the
CCA-Adding Enzyme Selects Adenine over Cytosine at
Position 76 of tRNA." Science,
330, 937-940. doi: 10.1126/science.1194985.
|
How the cca-adding enzyme selects adenine over cytosine
in position 76 of trna . SNAP output
|
3ovs
|
transferase-RNA |
X-ray (2.8 Å) |
Pan B, Xiong Y, Steitz TA |
(2010) "How the
CCA-Adding Enzyme Selects Adenine over Cytosine at
Position 76 of tRNA." Science,
330, 937-940. doi: 10.1126/science.1194985.
|
How the cca-adding enzyme selects adenine over cytosine
in position 76 of trna . SNAP output
|
3ow2
|
ribosome |
X-ray (2.7 Å) |
|
|
Crystal structure of enhanced macrolide bound to 50s
ribosomal subunit . SNAP
output
|
3p49
|
RNA binding protein-RNA |
X-ray (3.55 Å) |
Butler EB, Xiong Y, Wang J, Strobel SA |
(2011) "Structural
basis of cooperative ligand binding by the glycine
riboswitch." Chem.Biol.,
18, 293-298. doi: 10.1016/j.chembiol.2011.01.013.
|
Crystal structure of a glycine riboswitch from
fusobacterium nucleatum . SNAP output
|
3pdm
|
virus |
fiber diffraction |
Tewary SK, Oda T, Kendall A, Bian W, Stubbs G, Wong
SM, Swaminathan K |
(2010) "Structure
of Hibiscus latent Singapore virus by fiber
diffraction: A non-conserved His122 contributes to coat
protein stability." J.Mol.Biol. doi:
10.1016/j.jmb.2010.12.032.
|
Hibiscus latent singapore virus . SNAP output
|
3pew
|
hydrolase-RNA |
X-ray (1.501 Å) |
Montpetit B, Thomsen ND, Helmke KJ, Seeliger MA,
Berger JM, Weis K |
(2011) "A
conserved mechanism of DEAD-box ATPase activation by
nucleoporins and InsP(6) in mRNA export."
Nature, 472, 238-242. doi:
10.1038/nature09862.
|
S. cerevisiae dbp5 l327v bound to RNA and adp bef3 .
SNAP output
|
3pey
|
hydrolase-RNA |
X-ray (1.401 Å) |
Montpetit B, Thomsen ND, Helmke KJ, Seeliger MA,
Berger JM, Weis K |
(2011) "A
conserved mechanism of DEAD-box ATPase activation by
nucleoporins and InsP(6) in mRNA export."
Nature, 472, 238-242. doi:
10.1038/nature09862.
|
S. cerevisiae dbp5 bound to RNA and adp bef3 . SNAP output
|
3pf4
|
gene regulation-RNA |
X-ray (1.38 Å) |
Sachs R, Max KE, Heinemann U, Balbach J |
(2012) "RNA
single strands bind to a conserved surface of the major
cold shock protein in crystals and solution."
Rna, 18, 65-76. doi: 10.1261/rna.02809212.
|
Crystal structure of bs-cspb in complex with r(gucuuua)
. SNAP output
|
3pf5
|
gene regulation-RNA |
X-ray (1.68 Å) |
Sachs R, Max KE, Heinemann U, Balbach J |
(2012) "RNA
single strands bind to a conserved surface of the major
cold shock protein in crystals and solution."
Rna, 18, 65-76. doi: 10.1261/rna.02809212.
|
Crystal structure of bs-cspb in complex with ru6 .
SNAP output
|
3pio
|
ribosome-antibiotic |
X-ray (3.25 Å) |
Belousoff MJ, Shapira T, Bashan A, Zimmerman E,
Rozenberg H, Arakawa K, Kinashi H, Yonath A |
(2011) "Crystal
structure of the synergistic antibiotic pair,
lankamycin and lankacidin, in complex with the large
ribosomal subunit."
Proc.Natl.Acad.Sci.USA, 108,
2717-2722. doi: 10.1073/pnas.1019406108.
|
Crystal structure of the synergistic antibiotic pair
lankamycin and lankacidin in complex with the large
ribosomal subunit . SNAP
output
|
3pip
|
ribosome-antibiotic |
X-ray (3.45 Å) |
Belousoff MJ, Shapira T, Bashan A, Zimmerman E,
Rozenberg H, Arakawa K, Kinashi H, Yonath A |
(2011) "Crystal
structure of the synergistic antibiotic pair,
lankamycin and lankacidin, in complex with the large
ribosomal subunit."
Proc.Natl.Acad.Sci.USA, 108,
2717-2722. doi: 10.1073/pnas.1019406108.
|
Crystal structure of the synergistic antibiotic pair
lankamycin and lankacidin in complex with the large
ribosomal subunit . SNAP
output
|
3pkm
|
hydrolase-RNA |
X-ray (3.103 Å) |
Wang R, Preamplume G, Terns MP, Terns RM, Li H |
(2011) "Interaction
of the Cas6 Riboendonuclease with CRISPR RNAs:
Recognition and Cleavage." Structure,
19, 257-264. doi: 10.1016/j.str.2010.11.014.
|
Crystal structure of cas6 with its substrate RNA .
SNAP output
|
3pla
|
transferase-RNA |
X-ray (3.15 Å) |
Lin J, Lai S, Jia R, Xu A, Zhang L, Lu J, Ye K |
(2011) "Structural
basis for site-specific ribose methylation by box C/D
RNA protein complexes." Nature,
469, 559-563. doi: 10.1038/nature09688.
|
Crystal structure of a catalytically active
substrate-bound box c-d rnp from sulfolobus
solfataricus . SNAP
output
|
3ptx
|
viral protein-RNA |
X-ray (3.0 Å) |
Green TJ, Rowse M, Tsao J, Kang J, Ge P, Zhou ZH, Luo
M |
(2011) "Access
to RNA Encapsidated in the Nucleocapsid of Vesicular
Stomatitis Virus." J.Virol.,
85, 2714-2722. doi: 10.1128/JVI.01927-10.
|
Crystal structure of a vesicular stomatitis virus
nucleocapsid-polya complex . SNAP output
|
3pu0
|
viral protein-RNA |
X-ray (3.09 Å) |
Green TJ, Rowse M, Tsao J, Kang J, Ge P, Zhou ZH, Luo
M |
(2011) "Access
to RNA Encapsidated in the Nucleocapsid of Vesicular
Stomatitis Virus." J.Virol.,
85, 2714-2722. doi: 10.1128/JVI.01927-10.
|
Crystal structure of a vesicular stomatitis virus
nucleocapsid-polyc complex . SNAP output
|
3pu1
|
viral protein-RNA |
X-ray (3.14 Å) |
Green TJ, Rowse M, Tsao J, Kang J, Ge P, Zhou ZH, Luo
M |
(2011) "Access
to RNA Encapsidated in the Nucleocapsid of Vesicular
Stomatitis Virus." J.Virol.,
85, 2714-2722. doi: 10.1128/JVI.01927-10.
|
Crystal structure of a vesicular stomatitis virus
nucleocapsid-polyg complex . SNAP output
|
3pu4
|
viral protein-RNA |
X-ray (3.0 Å) |
Green TJ, Rowse M, Tsao J, Kang J, Ge P, Zhou ZH, Luo
M |
(2011) "Access
to RNA Encapsidated in the Nucleocapsid of Vesicular
Stomatitis Virus." J.Virol.,
85, 2714-2722. doi: 10.1128/JVI.01927-10.
|
Crystal structure of a vesicular stomatitis virus
nucleocapsid-polyu complex . SNAP output
|
3q0l
|
RNA binding protein-RNA |
X-ray (2.503 Å) |
Lu G, Hall TM |
(2011) "Alternate
modes of cognate RNA recognition by human PUMILIO
proteins." Structure, 19,
361-367. doi: 10.1016/j.str.2010.12.019.
|
Crystal structure of the pumilio-homology domain from
human pumilio1 in complex with p38alpha nrea . SNAP output
|
3q0m
|
RNA binding protein-RNA |
X-ray (2.705 Å) |
Lu G, Hall TM |
(2011) "Alternate
modes of cognate RNA recognition by human PUMILIO
proteins." Structure, 19,
361-367. doi: 10.1016/j.str.2010.12.019.
|
Crystal structure of the pumilio-homology domain from
human pumilio1 in complex with p38alpha nreb . SNAP output
|
3q0n
|
RNA binding protein-RNA |
X-ray (2.4 Å) |
Lu G, Hall TM |
(2011) "Alternate
modes of cognate RNA recognition by human PUMILIO
proteins." Structure, 19,
361-367. doi: 10.1016/j.str.2010.12.019.
|
Crystal structure of the pumilio-homology domain from
human pumilio1 in complex with erk2 nre . SNAP output
|
3q0o
|
RNA binding protein-RNA |
X-ray (2.804 Å) |
Lu G, Hall TM |
(2011) "Alternate
modes of cognate RNA recognition by human PUMILIO
proteins." Structure, 19,
361-367. doi: 10.1016/j.str.2010.12.019.
|
Crystal structure of the pumilio-homology domain from
human pumilio1 in complex with erk2 nre . SNAP output
|
3q0p
|
RNA binding protein-RNA |
X-ray (2.6 Å) |
Lu G, Hall TM |
(2011) "Alternate
modes of cognate RNA recognition by human PUMILIO
proteins." Structure, 19,
361-367. doi: 10.1016/j.str.2010.12.019.
|
Crystal structure of the pumilio-homology domain from
human pumilio1 in complex with hunchback nre . SNAP output
|
3q0q
|
RNA binding protein-RNA |
X-ray (2.0 Å) |
Lu G, Hall TM |
(2011) "Alternate
modes of cognate RNA recognition by human PUMILIO
proteins." Structure, 19,
361-367. doi: 10.1016/j.str.2010.12.019.
|
Crystal structure of the pumilio-homology domain from
human pumilio2 in complex with p38alpha nrea . SNAP output
|
3q0r
|
RNA binding protein-RNA |
X-ray (2.0 Å) |
Lu G, Hall TM |
(2011) "Alternate
modes of cognate RNA recognition by human PUMILIO
proteins." Structure, 19,
361-367. doi: 10.1016/j.str.2010.12.019.
|
Crystal structure of the pumilio-homology domain from
human pumilio2 in complex with p38alpha nreb . SNAP output
|
3q0s
|
RNA binding protein-RNA |
X-ray (2.0 Å) |
Lu G, Hall TM |
(2011) "Alternate
modes of cognate RNA recognition by human PUMILIO
proteins." Structure, 19,
361-367. doi: 10.1016/j.str.2010.12.019.
|
Crystal structure of the pumilio-homology domain from
human pumilio2 in complex with erk2 nre . SNAP output
|
3q2t
|
RNA binding protein-RNA |
X-ray (3.061 Å) |
Yang Q, Coseno M, Gilmartin GM, Doublie S |
(2011) "Crystal
Structure of a Human Cleavage Factor
CFI(m)25/CFI(m)68/RNA Complex Provides an Insight into
Poly(A) Site Recognition and RNA Looping."
Structure, 19, 368-377. doi:
10.1016/j.str.2010.12.021.
|
Crystal structure of cfim68 rrm-cfim25-RNA complex .
SNAP output
|
3qg9
|
RNA binding protein-RNA |
X-ray (2.25 Å) |
Koh YY, Wang Y, Qiu C, Opperman L, Gross L, Tanaka
Hall TM, Wickens M |
(2011) "Stacking
interactions in PUF-RNA complexes." Rna,
17, 718-727. doi: 10.1261/rna.2540311.
|
Crystal structure of fbf-2-gld-1 fbea a7u mutant
complex . SNAP
output
|
3qgb
|
RNA binding protein-RNA |
X-ray (2.4 Å) |
Koh YY, Wang Y, Qiu C, Opperman L, Gross L, Tanaka
Hall TM, Wickens M |
(2011) "Stacking
interactions in PUF-RNA complexes." Rna,
17, 718-727. doi: 10.1261/rna.2540311.
|
Crystal structure of fbf-2 r288y mutant in complex with
gld-1 fbea . SNAP
output
|
3qgc
|
RNA binding protein-RNA |
X-ray (1.9 Å) |
Koh YY, Wang Y, Qiu C, Opperman L, Gross L, Tanaka
Hall TM, Wickens M |
(2011) "Stacking
interactions in PUF-RNA complexes." Rna,
17, 718-727. doi: 10.1261/rna.2540311.
|
Crystal structure of fbf-2 r288y mutant in complex with
gld-1 fbea a7u mutant . SNAP output
|
3qjj
|
immune system-RNA |
X-ray (2.8 Å) |
Wang R, Zheng H, Preamplume G, Li H |
"Cooperative and Specific Binding of a RAMP Protein
to Single-stranded CRISPR Repeat RNA." |
One ramp protein binding different RNA substrates .
SNAP output
|
3qjl
|
immune system-RNA |
X-ray (2.7 Å) |
Wang R, Zheng H, Preamplume G, Li H |
"Cooperative and Specific Binding of a RAMP Protein
to Single-stranded CRISPR Repeat RNA." |
One ramp protein binding different RNA substrates .
SNAP output
|
3qjp
|
immune system-RNA |
X-ray (3.3 Å) |
Wang R, Zheng H, Preamplume G, Li H |
"Cooperative and Specific Binding of a RAMP Protein
to Single-stranded CRISPR Repeat RNA." |
An ramp protein binding different RNA substrates .
SNAP output
|
3qrp
|
RNA binding protein-RNA |
X-ray (2.352 Å) |
Gesner EM, Schellenberg MJ, Garside EL, George MM,
Macmillan AM |
(2011) "Recognition
and maturation of effector RNAs in a CRISPR
interference pathway."
Nat.Struct.Mol.Biol., 18,
688-692. doi: 10.1038/nsmb.2042.
|
Structure of thermus thermophilus cse3 bound to an RNA
representing a product mimic complex . SNAP output
|
3qrq
|
RNA binding protein-RNA |
X-ray (3.194 Å) |
Gesner EM, Schellenberg MJ, Garside EL, George MM,
Macmillan AM |
(2011) "Recognition
and maturation of effector RNAs in a CRISPR
interference pathway."
Nat.Struct.Mol.Biol., 18,
688-692. doi: 10.1038/nsmb.2042.
|
Structure of thermus thermophilus cse3 bound to an RNA
representing a pre-cleavage complex . SNAP output
|
3qrr
|
RNA binding protein-RNA |
X-ray (3.099 Å) |
Gesner EM, Schellenberg MJ, Garside EL, George MM,
Macmillan AM |
(2011) "Recognition
and maturation of effector RNAs in a CRISPR
interference pathway."
Nat.Struct.Mol.Biol., 18,
688-692. doi: 10.1038/nsmb.2042.
|
Structure of thermus thermophilus cse3 bound to an RNA
representing a product complex . SNAP output
|
3qsu
|
chaperone-RNA |
X-ray (2.2 Å) |
Horstmann N, Orans J, Valentin-Hansen P, Shelburne
SA, Brennan RG |
(2012) "Structural
mechanism of Staphylococcus aureus Hfq binding to an
RNA A-tract." Nucleic Acids Res.,
40, 11023-11035. doi: 10.1093/nar/gks809.
|
Structure of staphylococcus aureus hfq in complex with
a7 RNA . SNAP output
|
3qsy
|
translation-RNA |
X-ray (3.2 Å) |
Stolboushkina E, Nikonov S, Zelinskaya N, Arkhipova
V, Nikulin A, Garber M, Nikonov O |
(2013) "Crystal
structure of the archaeal translation initiation factor
2 in complex with a GTP analogue and
Met-tRNAf(Met.)." J.Mol.Biol.,
425, 989-998. doi: 10.1016/j.jmb.2012.12.023.
|
Recognition of the methionylated initiator trna by the
translation initiation factor 2 in archaea . SNAP output
|
3r1h
|
RNA binding protein-RNA |
X-ray (3.15 Å) |
Shechner DM, Bartel DP |
(2011) "The
structural basis of RNA-catalyzed RNA
polymerization." Nat.Struct.Mol.Biol.,
18, 1036-1042. doi: 10.1038/nsmb.2107.
|
Crystal structure of the class i ligase
ribozyme-substrate preligation complex, c47u mutant,
ca2+ bound . SNAP
output
|
3r1l
|
RNA binding protein-RNA |
X-ray (3.125 Å) |
Shechner DM, Bartel DP |
(2011) "The
structural basis of RNA-catalyzed RNA
polymerization." Nat.Struct.Mol.Biol.,
18, 1036-1042. doi: 10.1038/nsmb.2107.
|
Crystal structure of the class i ligase
ribozyme-substrate preligation complex, c47u mutant,
mg2+ bound . SNAP
output
|
3r2c
|
transcription-RNA |
X-ray (1.902 Å) |
Stagno JR, Altieri AS, Bubunenko M, Tarasov SG, Li J,
Court DL, Byrd RA, Ji X |
(2011) "Structural
basis for RNA recognition by NusB and NusE in the
initiation of transcription antitermination."
Nucleic Acids Res., 39,
7803-7815. doi: 10.1093/nar/gkr418.
|
Crystal structure of antitermination factors nusb and
nuse in complex with boxa RNA . SNAP output
|
3r2d
|
transcription-RNA |
X-ray (2.199 Å) |
Stagno JR, Altieri AS, Bubunenko M, Tarasov SG, Li J,
Court DL, Byrd RA, Ji X |
(2011) "Structural
basis for RNA recognition by NusB and NusE in the
initiation of transcription antitermination."
Nucleic Acids Res., 39,
7803-7815. doi: 10.1093/nar/gkr418.
|
Crystal structure of antitermination factors nusb and
nuse in complex with dsrna . SNAP output
|
3r9w
|
hydrolase-RNA |
X-ray (2.05 Å) |
Tu C, Zhou X, Tarasov SG, Tropea JE, Austin BP, Waugh
DS, Court DL, Ji X |
(2011) "The Era
GTPase recognizes the GAUCACCUCC sequence and binds
helix 45 near the 3' end of 16S rRNA."
Proc.Natl.Acad.Sci.USA, 108,
10156-10161. doi: 10.1073/pnas.1017679108.
|
Crystal structure of era in complex with mggdpnp and
nucleotides 1506-1542 of 16s ribosomal RNA . SNAP output
|
3r9x
|
hydrolase-transferase-RNA |
X-ray (2.8 Å) |
Tu C, Zhou X, Tarasov SG, Tropea JE, Austin BP, Waugh
DS, Court DL, Ji X |
(2011) "The Era
GTPase recognizes the GAUCACCUCC sequence and binds
helix 45 near the 3' end of 16S rRNA."
Proc.Natl.Acad.Sci.USA, 108,
10156-10161. doi: 10.1073/pnas.1017679108.
|
Crystal structure of era in complex with mggdpnp,
nucleotides 1506-1542 of 16s ribosomal RNA, and ksga .
SNAP output
|
3rc8
|
hydrolase-RNA |
X-ray (2.9 Å) |
Jedrzejczak R, Wang J, Dauter M, Szczesny RJ, Stepien
PP, Dauter Z |
(2011) "Human
Suv3 protein reveals unique features among SF2
helicases." Acta Crystallogr.,Sect.D,
67, 988-996. doi: 10.1107/S0907444911040248.
|
Human mitochondrial helicase suv3 in complex with short
RNA fragment . SNAP
output
|
3rer
|
chaperone-RNA |
X-ray (1.7 Å) |
Wang W, Wang L, Zou Y, Zhang J, Gong Q, Wu J, Shi
Y |
(2011) "Cooperation
of Escherichia coli Hfq hexamers in DsrA binding."
Genes Dev., 25, 2106-2117.
doi: 10.1101/gad.16746011.
|
Crystal structure of e. coli hfq in complex with au6a
RNA and adp . SNAP
output
|
3rtj
|
hydrolase-RNA |
X-ray (3.0 Å) |
Monzingo AF, Robertus JD |
(1992) "X-ray
analysis of substrate analogs in the ricin A-chain
active site." J.Mol.Biol.,
227, 1136-1145.
|
Crystal structure of ricin bound with dinucleotide apg
. SNAP output
|
3rw6
|
transport protein-RNA |
X-ray (2.3 Å) |
Teplova M, Wohlbold L, Khin NW, Izaurralde E, Patel
DJ |
(2011) "Structure-function
studies of nucleocytoplasmic transport of retroviral
genomic RNA by mRNA export factor TAP."
Nat.Struct.Mol.Biol., 18,
990-998. doi: 10.1038/nsmb.2094.
|
Structure of nuclear RNA export factor tap bound to cte
RNA . SNAP output
|
3s4g
|
virus |
X-ray (6.0 Å) |
Lane SW, Dennis CA, Lane CL, Trinh CH, Rizkallah PJ,
Stockley PG, Phillips SE |
(2011) "Construction
and crystal structure of recombinant STNV capsids."
J.Mol.Biol., 413, 41-50. doi:
10.1016/j.jmb.2011.07.062.
|
Low resolution structure of stnv complexed with RNA .
SNAP output
|
3siu
|
splicing-RNA |
X-ray (2.626 Å) |
Liu S, Ghalei H, Luhrmann R, Wahl MC |
(2011) "Structural
basis for the dual U4 and U4atac snRNA-binding
specificity of spliceosomal protein hPrp31."
Rna, 17, 1655-1663. doi:
10.1261/rna.2690611.
|
Structure of a hprp31-15.5k-u4atac 5' stem loop
complex, monomeric form . SNAP output
|
3siv
|
splicing-RNA |
X-ray (3.304 Å) |
Liu S, Ghalei H, Luhrmann R, Wahl MC |
(2011) "Structural
basis for the dual U4 and U4atac snRNA-binding
specificity of spliceosomal protein hPrp31."
Rna, 17, 1655-1663. doi:
10.1261/rna.2690611.
|
Structure of a hprp31-15.5k-u4atac 5' stem loop
complex, dimeric form . SNAP output
|
3sn2
|
lyase-RNA |
X-ray (2.99 Å) |
Walden WE, Selezneva A, Volz K |
(2012) "Accommodating
variety in iron-responsive elements: Crystal structure
of transferrin receptor 1 B IRE bound to iron
regulatory protein 1." Febs Lett.,
586, 32-35. doi: 10.1016/j.febslet.2011.11.018.
|
Crystal structure analysis of iron regulatory protein 1
in complex with transferrin receptor ire b RNA .
SNAP output
|
3snp
|
lyase-RNA |
X-ray (2.8 Å) |
Walden WE, Selezneva AI, Dupuy J, Volbeda A,
Fontecilla-Camps JC, Theil EC, Volz K |
(2006) "Structure
of dual function iron regulatory protein 1 complexed
with ferritin IRE-RNA." Science,
314, 1903-1908. doi: 10.1126/science.1133116.
|
Crystal structure analysis of iron regulatory protein 1
in complex with ferritin h ire RNA . SNAP output
|
3sqw
|
hydrolase-RNA |
X-ray (1.909 Å) |
Mohr G, Del Campo M, Turner KG, Gilman B, Wolf RZ,
Lambowitz AM |
(2011) "High-Throughput
Genetic Identification of Functionally Important
Regions of the Yeast DEAD-Box Protein Mss116p."
J.Mol.Biol., 413, 952-972.
doi: 10.1016/j.jmb.2011.09.015.
|
Structure of mss116p (nte deletion) bound to ssrna and
amp-pnp . SNAP
output
|
3t1h
|
ribosome-antibiotic |
X-ray (3.11 Å) |
Vendeix FA, Murphy FV, Cantara WA, Leszczynska G,
Gustilo EM, Sproat B, Malkiewicz A, Agris PF |
(2012) "Human
tRNA(Lys3)(UUU) Is Pre-Structured by Natural
Modifications for Cognate and Wobble Codon Binding
through Keto-Enol Tautomerism."
J.Mol.Biol., 416, 467-485.
doi: 10.1016/j.jmb.2011.12.048.
|
Structure of the thermus thermophilus 30s ribosomal
subunit complexed with a human anti-codon stem loop
(hasl) of transfer RNA lysine 3 (trnalys3) bound to an
mrna with an aaa-codon in the a-site and paromomycin .
SNAP output
|
3t1y
|
ribosome-antibiotic |
X-ray (2.8 Å) |
Vendeix FA, Murphy FV, Cantara WA, Leszczynska G,
Gustilo EM, Sproat B, Malkiewicz A, Agris PF |
(2012) "Human
tRNA(Lys3)(UUU) Is Pre-Structured by Natural
Modifications for Cognate and Wobble Codon Binding
through Keto-Enol Tautomerism."
J.Mol.Biol., 416, 467-485.
doi: 10.1016/j.jmb.2011.12.048.
|
Structure of the thermus thermophilus 30s ribosomal
subunit complexed with a human anti-codon stem loop
(hasl) of transfer RNA lysine 3 (trnalys3) bound to an
mrna with an aag-codon in the a-site and paromomycin .
SNAP output
|
3t3n
|
hydrolase-RNA |
X-ray (3.09 Å) |
Dorleans A, Li de la Sierra-Gallay I, Piton J, Zig L,
Gilet L, Putzer H, Condon C |
(2011) "Molecular
Basis for the Recognition and Cleavage of RNA by the
Bifunctional 5'-3' Exo/Endoribonuclease RNase J."
Structure, 19, 1252-1261.
doi: 10.1016/j.str.2011.06.018.
|
Molecular basis for the recognition and cleavage of RNA
(uuccgu) by the bifunctional 5'-3' exo-endoribonuclease
rnase j . SNAP
output
|
3t3o
|
hydrolase-RNA |
X-ray (2.5 Å) |
Dorleans A, Li de la Sierra-Gallay I, Piton J, Zig L,
Gilet L, Putzer H, Condon C |
(2011) "Molecular
Basis for the Recognition and Cleavage of RNA by the
Bifunctional 5'-3' Exo/Endoribonuclease RNase J."
Structure, 19, 1252-1261.
doi: 10.1016/j.str.2011.06.018.
|
Molecular basis for the recognition and cleavage of RNA
(cugg) by the bifunctional 5'-3' exo-endoribonuclease
rnase j . SNAP
output
|
3t5n
|
viral protein-RNA |
X-ray (1.787 Å) |
Hastie KM, Liu T, Li S, King LB, Ngo N, Zandonatti
MA, Woods VL, de la Torre JC, Saphire EO |
(2011) "Crystal
structure of the Lassa virus nucleoprotein-RNA complex
reveals a gating mechanism for RNA binding."
Proc.Natl.Acad.Sci.USA, 108,
19365-19370. doi: 10.1073/pnas.1108515108.
|
1.8a crystal structure of lassa virus nucleoprotein in
complex with ssrna . SNAP output
|
3t5q
|
viral protein-RNA |
X-ray (3.0 Å) |
Hastie KM, Liu T, Li S, King LB, Ngo N, Zandonatti
MA, Woods VL, de la Torre JC, Saphire EO |
(2011) "Crystal
structure of the Lassa virus nucleoprotein-RNA complex
reveals a gating mechanism for RNA binding."
Proc.Natl.Acad.Sci.USA, 108,
19365-19370. doi: 10.1073/pnas.1108515108.
|
3a structure of lassa virus nucleoprotein in complex
with ssrna . SNAP
output
|
3trz
|
RNA binding protein-RNA |
X-ray (2.9 Å) |
Nam Y, Chen C, Gregory RI, Chou JJ, Sliz P |
(2011) "Molecular
Basis for Interaction of let-7 MicroRNAs with
Lin28." Cell(Cambridge,Mass.),
147, 1080-1091. doi: 10.1016/j.cell.2011.10.020.
|
Mouse lin28a in complex with let-7d microrna
pre-element . SNAP
output
|
3ts0
|
RNA binding protein-RNA |
X-ray (2.763 Å) |
Nam Y, Chen C, Gregory RI, Chou JJ, Sliz P |
(2011) "Molecular
Basis for Interaction of let-7 MicroRNAs with
Lin28." Cell(Cambridge,Mass.),
147, 1080-1091. doi: 10.1016/j.cell.2011.10.020.
|
Mouse lin28a in complex with let-7f-1 microrna
pre-element . SNAP
output
|
3ts2
|
RNA binding protein-RNA |
X-ray (2.01 Å) |
Nam Y, Chen C, Gregory RI, Chou JJ, Sliz P |
(2011) "Molecular
Basis for Interaction of let-7 MicroRNAs with
Lin28." Cell(Cambridge,Mass.),
147, 1080-1091. doi: 10.1016/j.cell.2011.10.020.
|
Mouse lin28a in complex with let-7g microrna
pre-element . SNAP
output
|
3tup
|
ligase-RNA |
X-ray (3.05 Å) |
Klipcan L, Moor N, Finarov I, Kessler N, Sukhanova M,
Safro MG |
(2012) "Crystal
Structure of Human Mitochondrial PheRS Complexed with
tRNA(Phe) in the Active "Open" State."
J.Mol.Biol., 415, 527-537.
doi: 10.1016/j.jmb.2011.11.029.
|
Crystal structure of human mitochondrial phers
complexed with trnaphe in the active open state .
SNAP output
|
3u2e
|
lyase-RNA |
X-ray (2.32 Å) |
Filippova EV, Minasov G, Shuvalova L, Kiryukhina O,
Massa C, Schirmer T, Joachimiak A, Anderson WF, Midwest
Center for Structural Genomics (MCSG) |
"EAL domain from Caulobacter crescentus in complex
with 5'-pGpG and Mg++." |
Eal domain of phosphodiesterase pdea in complex with
5'-pgpg and mg++ . SNAP
output
|
3u4m
|
RNA-RNA binding protein |
X-ray (2.0 Å) |
Tishchenko S, Gabdulkhakov A, Nevskaya N, Sarskikh A,
Kostareva O, Nikonova E, Sycheva A, Moshkovskii S, Garber
M, Nikonov S |
(2012) "High-resolution
crystal structure of the isolated ribosomal L1
stalk." Acta Crystallogr.,Sect.D,
68, 1051-1057. doi: 10.1107/S0907444912020136.
|
Crystal structure of ribosomal protein tthl1 in complex
with 80nt 23s RNA from thermus thermophilus . SNAP output
|
3u56
|
RNA-RNA binding protein |
X-ray (2.1 Å) |
Tishchenko SV, Nikonova EY, Kostareva OS,
Gabdulkhakov AG, Sarskikh AV, Piendl W, Nikonov SV,
Garber MB, Nevskaya NA |
"Crystal structure of ribosomal protein tthl1 in
complex with 80nt 23s rna from thermus
thermophilus." |
Crystal structure of mutant ribosomal protein t217v
tthl1 in complex with 80nt 23s RNA from thermus
thermophilus . SNAP
output
|
3ucu
|
signaling protein-RNA |
X-ray (2.8 Å) |
Smith KD, Lipchock SV, Strobel SA |
(2012) "Structural
and biochemical characterization of linear dinucleotide
analogues bound to the c-di-GMP-I aptamer."
Biochemistry, 51, 425-432.
doi: 10.1021/bi2016662.
|
The c-di-gmp-i riboswitch bound to pgpg . SNAP output
|
3ucz
|
signaling protein-RNA |
X-ray (2.8 Å) |
Smith KD, Lipchock SV, Strobel SA |
(2012) "Structural
and biochemical characterization of linear dinucleotide
analogues bound to the c-di-GMP-I aptamer."
Biochemistry, 51, 425-432.
doi: 10.1021/bi2016662.
|
The c-di-gmp-i riboswitch bound to gpg . SNAP output
|
3ud3
|
signaling protein-RNA |
X-ray (3.1 Å) |
Smith KD, Lipchock SV, Strobel SA |
(2012) "Structural
and biochemical characterization of linear dinucleotide
analogues bound to the c-di-GMP-I aptamer."
Biochemistry, 51, 425-432.
doi: 10.1021/bi2016662.
|
The c92u mutant c-di-gmp-i riboswitch bound to pgpa .
SNAP output
|
3ud4
|
signaling protein-RNA |
X-ray (2.7 Å) |
Smith KD, Lipchock SV, Strobel SA |
(2012) "Structural
and biochemical characterization of linear dinucleotide
analogues bound to the c-di-GMP-I aptamer."
Biochemistry, 51, 425-432.
doi: 10.1021/bi2016662.
|
The c92u mutant c-di-gmp-i riboswitch bound to gpa .
SNAP output
|
3umy
|
rrna binding protein-RNA |
X-ray (1.9 Å) |
Tishchenko SV, Nikonova EY, Kostareva OS,
Gabdulkhakov AG, Sarskikh AV, Piendl W, Nikonov SV,
Garber MB, Nevskaya NA |
"Crystal structure of mutant ribosomal protein T217A
TthL1 in complex with 80nt 23S RNA from Thermus
thermophilus." |
Crystal structure of mutant ribosomal protein t217a
tthl1 in complex with 80nt 23s RNA from thermus
thermophilus . SNAP
output
|
3uzs
|
transferase-RNA |
X-ray (4.52 Å) |
Tesmer VM, Lennarz S, Mayer G, Tesmer JJ |
(2012) "Molecular
mechanism for inhibition of g protein-coupled receptor
kinase 2 by a selective RNA aptamer."
Structure, 20, 1300-1309.
doi: 10.1016/j.str.2012.05.002.
|
Structure of the c13.28 RNA aptamer bound to the g
protein-coupled receptor kinase 2-heterotrimeric g
protein beta 1 and gamma 2 subunit complex . SNAP output
|
3uzt
|
transferase-RNA |
X-ray (3.51 Å) |
Tesmer VM, Lennarz S, Mayer G, Tesmer JJ |
(2012) "Molecular
mechanism for inhibition of g protein-coupled receptor
kinase 2 by a selective RNA aptamer."
Structure, 20, 1300-1309.
doi: 10.1016/j.str.2012.05.002.
|
Structure of the c13.18 RNA aptamer in complex with g
protein-coupled receptor kinase 2 . SNAP output
|
3v11
|
translation-RNA |
X-ray (5.0 Å) |
Schmitt E, Panvert M, Lazennec-Schurdevin C, Coureux
PD, Perez J, Thompson A, Mechulam Y |
(2012) "Structure
of the ternary initiation complex
aIF2-GDPNP-methionylated initiator tRNA."
Nat.Struct.Mol.Biol., 19,
450-454. doi: 10.1038/nsmb.2259.
|
Structure of the ternary initiation complex
aif2:gdpnp:methionylated initiator trna . SNAP output
|
3v6y
|
RNA binding protein-RNA |
X-ray (2.5 Å) |
Qiu C, Kershner A, Wang Y, Holley CH, Wilinski D,
Keles S, Kimble J, Wickens M, Hall TMT |
(2012) "Divergence of PUF protein specificity through
variations in an RNA-binding pocket."
J.Biol.Chem. |
Crystal structure of fbf-2 in complex with a mutant
gld-1 fbea13 RNA . SNAP
output
|
3v71
|
RNA binding protein-RNA |
X-ray (2.902 Å) |
Qiu C, Kershner A, Wang Y, Holley CH, Wilinski D,
Keles S, Kimble J, Wickens M, Hall TMT |
(2012) "Divergence of PUF protein specificity through
variations in an RNA-binding pocket."
J.Biol.Chem. |
Crystal structure of puf-6 in complex with 5be13 RNA .
SNAP output
|
3v74
|
RNA binding protein-RNA |
X-ray (2.3 Å) |
Wang Y, Qiu C, Kershner A, Holley CP, Wilinski D,
Keles S, Kimble J, Wickens M, Hall TMT |
(2012) "Divergence of PUF protein specificity through
variations in an RNA-binding pocket."
J.Biol.Chem. |
Crystal structure of fbf-2 in complex with gld-1 fbea13
RNA . SNAP output
|
3v7e
|
ribosomal protein-RNA |
X-ray (2.8 Å) |
Baird NJ, Zhang J, Hamma T, Ferre-D'Amare AR |
(2012) "YbxF and
YlxQ are bacterial homologs of L7Ae and bind K-turns
but not K-loops." Rna,
18, 759-770. doi: 10.1261/rna.031518.111.
|
Crystal structure of ybxf bound to the sam-i riboswitch
aptamer . SNAP
output
|
3vjr
|
hydrolase-RNA |
X-ray (2.4 Å) |
Ito K, Murakami R, Mochizuki M, Qi H, Shimizu Y,
Miura K, Ueda T, Uchiumi T |
(2012) "Structural
basis for the substrate recognition and catalysis of
peptidyl-tRNA hydrolase." Nucleic Acids
Res., 40, 10521-10531. doi:
10.1093/nar/gks790.
|
Crystal structure of peptidyl-trna hydrolase from
escherichia coli in complex with the
cca-acceptor-t[psi]c domain of trna . SNAP output
|
3vnu
|
translation, transferase-RNA |
X-ray (3.2 Å) |
Takeshita D, Yamashita S, Tomita K |
(2012) "Mechanism
for template-independent terminal adenylation activity
of Q beta replicase." Structure,
20, 1661-1669. doi: 10.1016/j.str.2012.07.004.
|
Complex structure of viral RNA polymerase i . SNAP output
|
3vnv
|
translation, transferase-RNA |
X-ray (2.604 Å) |
Takeshita D, Yamashita S, Tomita K |
(2012) "Mechanism
for template-independent terminal adenylation activity
of Q beta replicase." Structure,
20, 1661-1669. doi: 10.1016/j.str.2012.07.004.
|
Complex structure of viral RNA polymerase ii . SNAP output
|
3vyx
|
hydrolase-RNA |
X-ray (2.29 Å) |
Fu Q, Yuan YA |
(2013) "Structural
insights into RISC assembly facilitated by
dsRNA-binding domains of human RNA helicase A
(DHX9)." Nucleic Acids Res.,
41, 3457-3470. doi: 10.1093/nar/gkt042.
|
Structural insights into risc assembly facilitated by
dsrna binding domains of human RNA helicase (dhx9) .
SNAP output
|
3vyy
|
hydrolase-RNA |
X-ray (2.9 Å) |
Fu Q, Yuan YA |
(2013) "Structural
insights into RISC assembly facilitated by
dsRNA-binding domains of human RNA helicase A
(DHX9)." Nucleic Acids Res.,
41, 3457-3470. doi: 10.1093/nar/gkt042.
|
Structural insights into risc assembly facilitated by
dsrna binding domains of human RNA helicase a (dhx9) .
SNAP output
|
3w1k
|
transferase-RNA |
X-ray (7.5 Å) |
Itoh Y, Brocker MJ, Sekine S, Hammond G, Suetsugu S,
Soll D, Yokoyama S |
(2013) "Decameric
SelA-tRNA(Sec) ring structure reveals mechanism of
bacterial selenocysteine formation."
Science, 340, 75-78. doi:
10.1126/science.1229521.
|
Crystal structure of the selenocysteine synthase sela
and trnasec complex . SNAP output
|
3w3s
|
ligase-RNA |
X-ray (3.095 Å) |
Itoh Y, Sekine S, Suetsugu S, Yokoyama S |
(2013) "Tertiary
structure of bacterial selenocysteine tRNA."
Nucleic Acids Res., 41,
6729-6738. doi: 10.1093/nar/gkt321.
|
Crystal structure of a. aeolicus trnasec in complex
with m. kandleri serrs . SNAP output
|
3wbm
|
RNA binding protein-RNA |
X-ray (2.0 Å) |
Guo L, Ding J, Guo R, Hou Y, Wang DC, Huang L |
(2014) "Biochemical
and structural insights into RNA binding by Ssh10b, a
member of the highly conserved Sac10b protein family in
Archaea." J.Biol.Chem.,
289, 1478-1490. doi: 10.1074/jbc.M113.521351.
|
Crystal structure of protein-RNA complex . SNAP output
|
3wc1
|
transferase-RNA |
X-ray (4.18 Å) |
Nakamura A, Nemoto T, Heinemann IU, Yamashita K,
Sonoda T, Komoda K, Tanaka I, Soll D, Yao M |
(2013) "Structural
basis of reverse nucleotide polymerization."
Proc.Natl.Acad.Sci.USA, 110,
20970-20975. doi: 10.1073/pnas.1321312111.
|
Crystal structure of c. albicans trna(his)
guanylyltransferase (thg1) with a g-1 deleted trna(his)
. SNAP output
|
3wc2
|
transferase-RNA |
X-ray (3.641 Å) |
Nakamura A, Nemoto T, Heinemann IU, Yamashita K,
Sonoda T, Komoda K, Tanaka I, Soll D, Yao M |
(2013) "Structural
basis of reverse nucleotide polymerization."
Proc.Natl.Acad.Sci.USA, 110,
20970-20975. doi: 10.1073/pnas.1321312111.
|
Crystal structure of c. albicans trna(his)
guanylyltransferase (thg1) with a trna(phe)(gug) .
SNAP output
|
3wfq
|
transferase-RNA |
X-ray (3.619 Å) |
Yamashita S, Takeshita D, Tomita K |
(2014) "Translocation
and rotation of tRNA during template-independent RNA
polymerization by tRNA nucleotidyltransferase."
Structure, 22, 315-325. doi:
10.1016/j.str.2013.12.002.
|
Trna processing enzyme complex 1 . SNAP output
|
3wfr
|
transferase-RNA |
X-ray (3.501 Å) |
Yamashita S, Takeshita D, Tomita K |
(2014) "Translocation
and rotation of tRNA during template-independent RNA
polymerization by tRNA nucleotidyltransferase."
Structure, 22, 315-325. doi:
10.1016/j.str.2013.12.002.
|
Trna processing enzyme complex 2 . SNAP output
|
3wfs
|
transferase-RNA |
X-ray (3.311 Å) |
Yamashita S, Takeshita D, Tomita K |
(2014) "Translocation
and rotation of tRNA during template-independent RNA
polymerization by tRNA nucleotidyltransferase."
Structure, 22, 315-325. doi:
10.1016/j.str.2013.12.002.
|
Trna processing enzyme complex 3 . SNAP output
|
3wqy
|
ligase-RNA |
X-ray (3.3 Å) |
Naganuma M, Sekine S, Chong YE, Guo M, Yang XL,
Gamper H, Hou YM, Schimmel P, Yokoyama S |
(2014) "The
selective tRNA aminoacylation mechanism based on a
single G.U pair." Nature,
510, 507-511. doi: 10.1038/nature13440.
|
Crystal structure of archaeoglobus fulgidus alanyl-trna
synthetase in complex with wild-type trna(ala) having
g3.u70 . SNAP output
|
3wqz
|
ligase-RNA |
X-ray (3.489 Å) |
Naganuma M, Sekine S, Chong YE, Guo M, Yang XL,
Gamper H, Hou YM, Schimmel P, Yokoyama S |
(2014) "The
selective tRNA aminoacylation mechanism based on a
single G.U pair." Nature,
510, 507-511. doi: 10.1038/nature13440.
|
Crystal structure of archaeoglobus fulgidus alanyl-trna
synthetase in complex with a trna(ala) variant having
a3.u70 . SNAP output
|
3wzi
|
transcription-RNA |
X-ray (2.9 Å) |
Yan X, Guo W, Yuan YA |
(2015) "Crystal
structures of CRISPR-associated Csx3 reveal a
manganese-dependent deadenylation exoribonuclease."
Rna Biol., 12, 749-760. doi:
10.1080/15476286.2015.1051300.
|
Crystal structure of afcsx3 in complex with ssrna .
SNAP output
|
3zc0
|
hydrolase-RNA |
X-ray (2.982 Å) |
Parizotto EA, Lowe ED, Parker JS |
(2013) "Structural
Basis for Duplex RNA Recognition and Cleavage by
Archaeoglobus Fulgidus C3Po."
Nat.Struct.Mol.Biol., 20,
380. doi: 10.1038/NSMB.2487.
|
Structure of afc3po - duplex RNA complex . SNAP output
|
3zd6
|
hydrolase-RNA |
X-ray (2.8 Å) |
Kohlway A, Luo D, Rawling DC, Ding SC, Pyle AM |
(2013) "Defining
the Functional Determinants for RNA Surveillance by
Rig-I." Embo Rep., 14,
772. doi: 10.1038/EMBOR.2013.108.
|
Snapshot 1 of rig-i scanning on RNA duplex . SNAP output
|
3zd7
|
hydrolase-RNA |
X-ray (2.5 Å) |
Kohlway A, Luo D, Rawling DC, Ding SC, Pyle AM |
(2013) "Defining
the Functional Determinants for RNA Surveillance by
Rig-I." Embo Rep., 14,
772. doi: 10.1038/EMBOR.2013.108.
|
Snapshot 3 of rig-i scanning on RNA duplex . SNAP output
|
3zjt
|
ligase-RNA |
X-ray (2.2 Å) |
Hernandez V, Crepin T, Palencia A, Cusack S, Akama T,
Baker SJ, Bu W, Feng L, Freund YR, Liu L, Meewan M, Mohan
M, Mao W, Rock FL, Sexton H, Sheoran A, Zhang Y, Zhang Y,
Zhou Y, Nieman JA, Anugula MR, Keramane EM, Savariraj K,
Reddy DS, Sharma R, Subedi R, Singh R, O'Leary A, Simon
NL, De Marsh PL, Mushtaq S, Warner M, Livermore DM, Alley
MRK, Plattner JJ |
(2013) "Discovery
of a Novel Class of Boron-Based Antibacterials with
Activity Against Gram-Negative Bacteria."
Antimicrob.Agents Chemother.,
57, 1394. doi: 10.1128/AAC.02058-12.
|
Ternary complex of e.coli leucyl-trna synthetase,
trna(leu)574 and the benzoxaborole an3017 in the
editing conformation . SNAP output
|
3zju
|
ligase-RNA |
X-ray (2.4 Å) |
Hernandez V, Crepin T, Palencia A, Cusack S, Akama T,
Baker SJ, Bu W, Feng L, Freund YR, Liu L, Meewan M, Mohan
M, Mao W, Rock FL, Sexton H, Sheoran A, Zhang Y, Zhang Y,
Zhou Y, Nieman JA, Anugula MR, Keramane EM, Savariraj K,
Reddy DS, Sharma R, Subedi R, Singh R, O'Leary A, Simon
NL, De Marsh PL, Mushtaq S, Warner M, Livermore DM, Alley
MRK, Plattner JJ |
(2013) "Discovery
of a Novel Class of Boron-Based Antibacterials with
Activity Against Gram-Negative Bacteria."
Antimicrob.Agents Chemother.,
57, 1394. doi: 10.1128/AAC.02058-12.
|
Ternary complex of e .coli leucyl-trna synthetase,
trna(leu) and the benzoxaborole an3016 in the editing
conformation . SNAP
output
|
3zjv
|
ligase-RNA |
X-ray (2.31 Å) |
Hernandez V, Crepin T, Palencia A, Cusack S, Akama T,
Baker SJ, Bu W, Feng L, Freund YR, Liu L, Meewan M, Mohan
M, Mao W, Rock FL, Sexton H, Sheoran A, Zhang Y, Zhang Y,
Zhou Y, Nieman JA, Anugula MR, Keramane EM, Savariraj K,
Reddy DS, Sharma R, Subedi R, Singh R, O'Leary A, Simon
NL, De Marsh PL, Mushtaq S, Warner M, Livermore DM, Alley
MRK, Plattner JJ |
(2013) "Discovery
of a Novel Class of Boron-Based Antibacterials with
Activity Against Gram-Negative Bacteria."
Antimicrob.Agents Chemother.,
57, 1394. doi: 10.1128/AAC.02058-12.
|
Ternary complex of e .coli leucyl-trna synthetase,
trna(leu) and the benzoxaborole an3213 in the editing
conformation . SNAP
output
|
3zla
|
viral protein-RNA |
X-ray (3.2 Å) |
Ariza A, Tanner SJ, Walter CT, Dent KC, Shepherd DA,
Wu W, Matthews SV, Hiscox JA, Green TJ, Luo M, Elliott
RM, Fooks AR, Ashcroft AE, Stonehouse NJ, Ranson NA, Barr
JN, Edwards TA |
(2013) "Nucleocapsid
Protein Structures from Orthobunyaviruses Reveal
Insight Into Ribonucleoprotein Architecture and RNA
Polymerization." Nucleic Acids Res.,
41, 5912. doi: 10.1093/NAR/GKT268.
|
Crystal structure of the nucleocapsid protein from
bunyamwera virus bound to RNA . SNAP output
|
3zn8
|
protein transport |
cryo-EM (12.0 Å) |
Von Loeffelholz O, Knoops K, Ariosa A, Zhang X,
Karuppasamy M, Huard K, Schoehn G, Berger I, Shan SO,
Schaffitzel C |
(2013) "Structural
Basis of Signal Sequence Surveillance and Selection by
the Srp-Sr Complex." Nat.Struct.Mol.Biol.,
20, 604. doi: 10.1038/NSMB.2546.
|
Structural basis of signal sequence surveillance and
selection by the srp-sr complex . SNAP output
|
484d
|
RNA binding protein-RNA |
NMR |
Ye X, Gorin A, Frederick R, Hu W, Majumdar A, Xu W,
McLendon G, Ellington A, Patel DJ |
(1999) "RNA
architecture dictates the conformations of a bound
peptide." Chem.Biol., 6,
657-669. doi: 10.1016/S1074-5521(99)80117-3.
|
Solution structure of hiv-1 rev peptide-RNA aptamer
complex . SNAP
output
|
4a2i
|
ribosome-hydrolase |
cryo-EM (16.5 Å) |
Jomaa A, Stewart G, Mears JA, Kireeva I, Brown ED,
Ortega J |
(2011) "Cryo-Electron
Microscopy Structure of the 30S Subunit in Complex with
the Yjeq Biogenesis Factor." RNA,
17, 2026. doi: 10.1261/RNA.2922311.
|
Cryo-electron microscopy structure of the 30s subunit
in complex with the yjeq biogenesis factor . SNAP output
|
4a2x
|
RNA binding protein-RNA |
X-ray (4.0 Å) |
Kowalinski E, Lunardi T, McCarthy AA, Louber J,
Brunel J, Grigorov B, Gerlier D, Cusack S |
(2011) "Structural
basis for the activation of innate immune
pattern-recognition receptor RIG-I by viral RNA."
Cell, 147, 423-435. doi:
10.1016/j.cell.2011.09.039.
|
Structure of duck rig-i c-terminal domain (ctd) with
14-mer dsrna . SNAP
output
|
4a36
|
RNA binding protein-RNA |
X-ray (3.7 Å) |
Kowalinski E, Lunardi T, Mccarthy AA, Louber J,
Brunel J, Grigorov B, Gerlier D, Cusack S |
(2011) "Structural
Basis for the Activation of Innate Immune Pattern
Recognition Receptor Rig-I by Viral RNA."
Cell(Cambridge,Mass.), 147,
423. doi: 10.1016/J.CELL.2011.09.039.
|
Structure of duck rig-i helicase domain bound to 19-mer
dsrna and atp transition state analogue . SNAP output
|
4adv
|
translation |
cryo-EM (13.5 Å) |
Boehringer D, O'Farrell HC, Rife JP, Ban N |
(2012) "Structural
Insights Into Methyltransferase Ksga Function in 30S
Ribosomal Subunit Biogenesis."
J.Biol.Chem., 287,
10453-10459. doi: 10.1074/JBC.M111.318121.
|
Structure of the e. coli methyltransferase ksga bound
to the e. coli 30s ribosomal subunit . SNAP output
|
4afy
|
hydrolase |
X-ray (2.01 Å) |
Robert-Paganin J, Nonin-Lecomte S, Rety S |
(2012) "Crystal
Structure of an Eal Domain in Complex with Reaction
Product 5'-Pgpg." Plos One,
7, 52424. doi: 10.1371/JOURNAL.PONE.0052424.
|
Crystal structure of the fimx eal domain in complex
with reaction product pgpg . SNAP output
|
4al6
|
hydrolase-RNA |
X-ray (2.63 Å) |
Haurwitz RE, Sternberg SH, Doudna JA |
(2012) "Csy4
Relies on an Unusual Catalytic Dyad to Position and
Cleave Crispr RNA." Embo J.,
31, 2824. doi: 10.1038/EMBOJ.2012.107.
|
Crystal structure of the s148acsy4-crrna complex .
SNAP output
|
4al7
|
hydrolase-RNA |
X-ray (2.32 Å) |
Haurwitz RE, Sternberg SH, Doudna JA |
(2012) "Csy4
Relies on an Unusual Catalytic Dyad to Position and
Cleave Crispr RNA." Embo J.,
31, 2824. doi: 10.1038/EMBOJ.2012.10.
|
Crystal structure of the csy4-minimal crrna complex .
SNAP output
|
4alp
|
chaperone-RNA |
X-ray (1.48 Å) |
Mayr F, Schutz A, Doge N, Heinemann U |
(2012) "The
Lin28 Cold-Shock Domain Remodels Pre-Let-7
Microrna." Nucleic Acids Res.,
40, 7492. doi: 10.1093/NAR/GKS355.
|
The lin28b cold shock domain in complex with
hexauridine . SNAP
output
|
4ang
|
virus |
X-ray (3.5 Å) |
Persson M, Tars K, Liljas L |
(2013) "Prr1
Coat Protein Binding to its RNA Translational
Operator." Acta Crystallogr.,Sect.D,
69, 367. doi: 10.1107/S0907444912047464.
|
Small RNA phage prr1 in complex with an RNA operator
fragment . SNAP
output
|
4aq7
|
ligase-RNA |
X-ray (2.5 Å) |
Palencia A, Crepin T, Vu MT, Lincecum Jr TL, Martinis
SA, Cusack S |
(2012) "Structural
Dynamics of the Aminoacylation and Proofreading
Functional Cycle of Bacterial Leucyl-tRNA
Synthetase." Nat.Struct.Mol.Biol.,
19, 677. doi: 10.1038/NSMB.2317.
|
Ternary complex of e. coli leucyl-trna synthetase,
trna(leu) and leucyl-adenylate analogue in the
aminoacylation conformation . SNAP output
|
4aqy
|
ribosome |
X-ray (3.5 Å) |
Matt T, Ng CL, Lang K, Sha SH, Akbergenov R,
Shcherbakov D, Meyer M, Duscha S, Xie J, Dubbaka SR,
Perez-Fernandez D, Vasella A, Ramakrishnan V, Schacht J,
Bottger EC |
(2012) "Dissociation
of Antibacterial Activity and Aminoglycoside
Ototoxicity in the 4-Monosubstituted 2-Deoxystreptamine
Apramycin." Proc.Natl.Acad.Sci.USA,
109, 10984. doi: 10.1073/PNAS.1204073109.
|
Structure of ribosome-apramycin complexes . SNAP output
|
4arc
|
ligase-RNA |
X-ray (2.0 Å) |
Palencia A, Crepin T, Vu MT, Lincecum Jr TL, Martinis
SA, Cusack S |
(2012) "Structural
Dynamics of the Aminoacylation and Proofreading
Functional Cycle of Bacterial Leucyl-tRNA
Synthetase." Nat.Struct.Mol.Biol.,
19, 677. doi: 10.1038/NSMB.2317.
|
Ternary complex of e. coli leucyl-trna synthetase,
trna(leu) and leucine in the editing conformation .
SNAP output
|
4ari
|
ligase-RNA |
X-ray (2.08 Å) |
Palencia A, Crepin T, Vu MT, Lincecum Jr TL, Martinis
SA, Cusack S |
(2012) "Structural
Dynamics of the Aminoacylation and Proofreading
Functional Cycle of Bacterial Leucyl-tRNA
Synthetase." Nat.Struct.Mol.Biol.,
19, 677. doi: 10.1038/NSMB.2317.
|
Ternary complex of e. coli leucyl-trna synthetase,
trna(leu) and the benzoxaborole an2679 in the editing
conformation . SNAP
output
|
4as1
|
ligase-RNA |
X-ray (2.02 Å) |
Palencia A, Crepin T, Vu MT, Lincecum Jr TL, Martinis
SA, Cusack S |
(2012) "Structural
Dynamics of the Aminoacylation and Proofreading
Functional Cycle of Bacterial Leucyl-tRNA
Synthetase." Nat.Struct.Mol.Biol.,
19, 677. doi: 10.1038/NSMB.2317.
|
Ternary complex of e. coli leucyl-trna synthetase,
trna(leu) and the benzoxaborole an2679 in the editing
conformation . SNAP
output
|
4ato
|
toxin-antitoxin |
X-ray (2.2 Å) |
Short FL, Pei XY, Blower TR, Ong SL, Fineran PC,
Luisi BF, Salmond GPC |
(2013) "Selectivity
and Self-Assembly in the Control of a Bacterial Toxin
by an Antitoxic Noncoding RNA Pseudoknot."
Proc.Natl.Acad.Sci.USA, 110,
E241. doi: 10.1073/PNAS.1216039110.
|
New insights into the mechanism of bacterial type iii
toxin-antitoxin systems: selective toxin inhibition by
a non-coding RNA pseudoknot . SNAP output
|
4ay2
|
hydrolase-RNA |
X-ray (2.8 Å) |
Luo D, Kohlway A, Vela A, Pyle AM |
(2012) "Visualizing
the Determinants of Viral RNA Recognition by Innate
Immune Sensor Rig-I." Structure,
20, 1983. doi: 10.1016/J.STR.2012.08.029.
|
Capturing 5' tri-phosphorylated RNA duplex by rig-i .
SNAP output
|
4b3g
|
hydrolase-RNA |
X-ray (2.85 Å) |
Lim SC, Bowler MW, Lai TF, Song H |
(2012) "The
Ighmbp2 Helicase Structure Reveals the Molecular Basis
for Disease-Causing Mutations in Dmsa1."
Nucleic Acids Res., 40,
11009. doi: 10.1093/NAR/GKS792.
|
Crystal structure of ighmbp2 helicase in complex with
RNA . SNAP output
|
4b3m
|
ribosome |
X-ray (2.9 Å) |
Perez-Fernandez D, Shcherbakov D, Matt T, Leong NC,
Kudyba I, Duscha S, Boukari H, Patak R, Dubakka SR, Lang
K, Meyer M, Akbergenov R, Freihofer P, Vaddi S, Thommes
P, Ramakrishnan V, Vasella A, Bottger EC |
(2014) "4'-O-Substitutions
Determine Selectivity of Aminoglycoside
Antibiotics." Nat.Commun.,
5, 3112. doi: 10.1038/NCOMMS4112.
|
Crystal structure of the 30s ribosome in complex with
compound 1 . SNAP
output
|
4b3r
|
ribosome |
X-ray (3.0 Å) |
Perez-Fernandez D, Shcherbakov D, Matt T, Leong NC,
Kudyba I, Duscha S, Boukari H, Patak R, Dubakka SR, Lang
K, Meyer M, Akbergenov R, Freihofer P, Vaddi S, Thommes
P, Ramakrishnan V, Vasella A, Bottger EC |
(2014) "4'-O-Substitutions
Determine Selectivity of Aminoglycoside
Antibiotics." Nat.Commun.,
5, 3112. doi: 10.1038/NCOMMS4112.
|
Crystal structure of the 30s ribosome in complex with
compound 30 . SNAP
output
|
4b3s
|
ribosome |
X-ray (3.15 Å) |
Perez-Fernandez D, Shcherbakov D, Matt T, Leong NC,
Kudyba I, Duscha S, Boukari H, Patak R, Dubakka SR, Lang
K, Meyer M, Akbergenov R, Freihofer P, Vaddi S, Thommes
P, Ramakrishnan V, Vasella A, Bottger EC |
(2014) "4'-O-Substitutions
Determine Selectivity of Aminoglycoside
Antibiotics." Nat.Commun.,
5, 3112. doi: 10.1038/NCOMMS4112.
|
Crystal structure of the 30s ribosome in complex with
compound 37 . SNAP
output
|
4b3t
|
ribosome |
X-ray (3.0 Å) |
Perez-Fernandez D, Shcherbakov D, Matt T, Leong NC,
Kudyba I, Duscha S, Boukari H, Patak R, Dubakka SR, Lang
K, Meyer M, Akbergenov R, Freihofer P, Vaddi S, Thommes
P, Ramakrishnan V, Vasella A, Bottger EC |
(2014) "4'-O-Substitutions
Determine Selectivity of Aminoglycoside
Antibiotics." Nat.Commun.,
5, 3112. doi: 10.1038/NCOMMS4112.
|
Crystal structure of the 30s ribosome in complex with
compound 39 . SNAP
output
|
4b8t
|
transcription-RNA |
NMR |
Nicastro G, Garcia-Mayoral MF, Hollingworth D, Kelly
G, Martin SR, Briata P, Gherzi R, Ramos A |
(2012) "Noncanonical
G Recognition Mediates Ksrp Regulation of Let-7
Biogenesis." Nat.Struct.Mol.Biol.,
19, 1282. doi: 10.1038/NSMB.2427.
|
RNA binding protein solution structure of the third kh
domain of ksrp in complex with the g-rich target
sequence. . SNAP
output
|
4ba2
|
hydrolase-RNA |
X-ray (2.501 Å) |
Lorentzen E, Conti E |
(2012) "Crystal
Structure of a 9-Subunit Archaeal Exosome in
Pre-Catalytic States of the Phosphorolytic
Reaction." Archaea, 2012,
21869. doi: 10.1155/2012/721869.
|
Archaeal exosome (rrp4-rrp41(d182a)-rrp42) bound to
inorganic phosphate . SNAP output
|
4bhh
|
viral protein-RNA |
X-ray (3.4 Å) |
Reguera J, Malet H, Weber F, Cusack S |
(2013) "Structural
Basis for Encapsidation of Genomic RNA by La Crosse
Orthobunyavirus Nucleoprotein."
Proc.Natl.Acad.Sci.USA, 110,
7246. doi: 10.1073/PNAS.1302298110.
|
Crystal structure of tetramer of la crosse virus
nucleoprotein in complex with ssrna . SNAP output
|
4bkk
|
viral protein-RNA |
cryo-EM |
Bakker SE, Duquerroy S, Galloux M, Loney C, Conner E,
Eleouet JF, Rey FA, Bhella D |
(2013) "The
Respiratory Syncytial Virus Nucleoprotein-RNA Complex
Forms a Left-Handed Helical Nucleocapsid."
J.Gen.Virol., 94, 1734. doi:
10.1099/VIR.0.053025-0.
|
The respiratory syncytial virus nucleoprotein-RNA
complex forms a left-handed helical nucleocapsid. .
SNAP output
|
4bpb
|
hydrolase-RNA |
X-ray (2.584 Å) |
Luo D, Ding SC, Vela A, Kohlway A, Lindenbach BD,
Pyle AM |
(2011) "Structural
Insights Into RNA Recognition by Rig-I."
Cell(Cambridge,Mass.), 147,
409. doi: 10.1016/J.CELL.2011.09.023.
|
Structural insights into RNA recognition by rig-i .
SNAP output
|
4bs2
|
transcription |
NMR |
Lukavsky PJ, Daujotyte D, Tollervey JR, Ule J, Stuani
C, Buratti E, Baralle FE, Damberger FF, Allain FHT |
(2013) "Molecular
Basis of Ug-Rich RNA Recognition by the Human Splicing
Factor Tdp-43." Nat.Struct.Mol.Biol.,
20, 1443. doi: 10.1038/NSMB.2698.
|
NMR structure of human tdp-43 tandem rrms in complex
with ug-rich RNA . SNAP
output
|
4bts
|
ribosome |
X-ray (3.703 Å) |
Weisser M, Voigts-Hoffmann F, Rabl J, Leibundgut M,
Ban N |
(2013) "The
crystal structure of the eukaryotic 40S ribosomal
subunit in complex with eIF1 and eIF1A." Nat.
Struct. Mol. Biol., 20,
1015-1017. doi: 10.1038/nsmb.2622.
|
The crystal structure of the eukaryotic 40s ribosomal
subunit in complex with eif1 and eif1a . SNAP output
|
4bw0
|
RNA-RNA binding protein |
X-ray (2.33 Å) |
Huang L, Lilley DMJ |
(2013) "The
Molecular Recognition of Kink-Turn Structure by the
L7Ae Class of Proteins." RNA,
19, 1703. doi: 10.1261/RNA.041517.113.
|
The molecular recognition of kink turn structure by the
l7ae class of proteins . SNAP output
|
4by9
|
transferase-RNA |
NMR |
Lapinaite A, Simon B, Skjaerven L, Rakwalska-Bange M,
Gabel F, Carlomagno T |
(2013) "The
Structure of the Box C/D Enzyme Reveals Regulation of
RNA Methylation." Nature,
502, 519. doi: 10.1038/NATURE12581.
|
The structure of the box cd enzyme reveals regulation
of rrna methylation . SNAP output
|
4c4w
|
RNA binding protein-RNA |
X-ray (2.95 Å) |
Huang L, Lilley DMJ |
(2014) "Structure
of a Rare, Non-Standard Sequence K-Turn Bound by L7Ae
Protein." Nucleic Acids Res.,
42, 4734. doi: 10.1093/NAR/GKU087.
|
Structure of a rare, non-standard sequence k-turn bound
by l7ae protein . SNAP
output
|
4c7o
|
nuclear protein-RNA |
X-ray (2.6 Å) |
Voigts-Hoffmann F, Schmitz N, Shen K, Shan SO, Ataide
SF, Ban N |
(2013) "The
Structural Basis of Ftsy Recruitment and Gtpase
Activation by Srp RNA." Mol.Cell,
52, 643. doi: 10.1016/J.MOLCEL.2013.10.005.
|
The structural basis of ftsy recruitment and gtpase
activation by srp RNA . SNAP output
|
4c8z
|
hydrolase-RNA |
X-ray (2.503 Å) |
Niewoehner O, Jinek M, Doudna JA |
(2014) "Evolution
of Crispr RNA Recognition and Processing by Cas6
Endonucleases." Nucleic Acids Res.,
42, 1341. doi: 10.1093/NAR/GKT922.
|
Cas6 (ttha0078) product complex . SNAP output
|
4c9d
|
hydrolase-RNA |
X-ray (3.0 Å) |
Niewoehner O, Jinek M, Doudna JA |
(2014) "Evolution
of CRISPR RNA recognition and processing by Cas6
endonucleases." Nucleic Acids Res.,
42, 1341-1353. doi: 10.1093/nar/gkt922.
|
Cas6 (tthb231) product complex . SNAP output
|
4ce4
|
ribosome |
cryo-EM (4.9 Å) |
Greber BJ, Boehringer D, Leitner A, Bieri P,
Voigts-Hoffmann F, Erzberger JP, Leibundgut M, Aebersold
R, Ban N |
(2014) "Architecture
of the Large Subunit of the Mammalian Mitochondrial
Ribosome." Nature, 505,
515. doi: 10.1038/NATURE12890.
|
39s large subunit of the porcine mitochondrial ribosome
. SNAP output
|
4cio
|
RNA binding protein-RNA |
NMR |
Amrane S, Rebora K, Zniber I, Dupuy D, Mackereth
CD |
(2014) "Backbone-Independent
Nucleic Acid Binding by Splicing Factor Sup-12 Reveals
Key Aspects of Molecular Recognition."
Nat.Commun., 5, 4595. doi:
10.1038/NCOMMS5595.
|
Rrm domain from c. elegans sup-12 bound to ggugugc RNA
. SNAP output
|
4cqn
|
ligase-RNA |
X-ray (2.5 Å) |
Cvetesic N, Palencia A, Halasz I, Cusack S,
Gruic-Sovulj I |
(2014) "The
Physiological Target for Leurs Translational Quality
Control is Norvaline." Embo J.,
33, 1639. doi: 10.15252/EMBJ.201488199.
|
Crystal structure of the e.coli leurs-trna complex with
the non- cognate isoleucyl adenylate analogue .
SNAP output
|
4csf
|
viral protein-RNA |
X-ray (2.598 Å) |
Olal D, Dick A, Woods VL, Liu T, Li S, Devignot S,
Weber F, Saphire EO, Daumke O |
(2014) "Structural
Insights Into RNA Encapsidation and Helical Assembly of
the Toscana Virus Nucleoprotein." Nucleic Acids
Res., 42, 6025. doi: 10.1093/NAR/GKU229.
|
Structural insights into toscana virus RNA
encapsidation . SNAP
output
|
4csu
|
ribosome |
cryo-EM (5.5 Å) |
Feng B, Mandava CS, Guo Q, Wang J, Cao W, Li N, Zhang
Y, Zhang Y, Wang Z, Wu J, Sanyal S, Lei J, Gao N |
(2014) "Structural
and Functional Insights Into the Mode of Action of a
Universally Conserved Obg Gtpase." Plos
Biol., 12, 1866. doi: 10.1371/JOURNAL.PBIO.1001866.
|
cryo-EM structures of the 50s ribosome subunit bound
with obge . SNAP
output
|
4cxg
|
translation |
cryo-EM (8.7 Å) |
Budkevich TV, Giesebrecht J, Behrmann E, Loerke J,
Ramrath DJ, Mielke T, Ismer J, Hildebrand PW, Tung CS,
Nierhaus KH, Sanbonmatsu KY, Spahn CM |
(2014) "Regulation
of the Mammalian Elongation Cycle by Subunit Rolling: A
Eukaryotic-Specific Ribosome Rearrangement."
Cell(Cambridge,Mass.), 158,
121. doi: 10.1016/J.CELL.2014.04.044.
|
Regulation of the mammalian elongation cycle by 40s
subunit rolling: a eukaryotic-specific ribosome
rearrangement . SNAP
output
|
4cxh
|
translation |
cryo-EM (8.9 Å) |
Budkevich TV, Giesebrecht J, Behrmann E, Loerke J,
Ramrath DJ, Mielke T, Ismer J, Hildebrand PW, Tung CS,
Nierhaus KH, Sanbonmatsu KY, Spahn CM |
(2014) "Regulation
of the Mammalian Elongation Cycle by Subunit Rolling: A
Eukaryotic-Specific Ribosome Rearrangement."
Cell(Cambridge,Mass.), 158,
121. doi: 10.1016/J.CELL.2014.04.044.
|
Regulation of the mammalian elongation cycle by 40s
subunit rolling: a eukaryotic-specific ribosome
rearrangement . SNAP
output
|
4d25
|
hydrolase |
X-ray (1.9 Å) |
Xiol J, Spinelli P, Laussmann MA, Homolka D, Yang Z,
Cora E, Coute Y, Conn S, Kadlec J, Sachidanandam R,
Kaksonen M, Cusack S, Ephrussi A, Pillai RS |
(2014) "RNA
Clamping by Vasa Assembles a Pirna Amplifier Complex on
Transposon Transcripts."
Cell(Cambridge,Mass.), 157,
1698. doi: 10.1016/J.CELL.2014.05.018.
|
Crystal structure of the bombyx mori vasa helicase
(e339q) in complex with RNA and amppnp . SNAP output
|
4d26
|
hydrolase |
X-ray (2.1 Å) |
Xiol J, Spinelli P, Laussmann MA, Homolka D, Yang Z,
Cora E, Coute Y, Conn S, Kadlec J, Sachidanandam R,
Kaksonen M, Cusack S, Ephrussi A, Pillai RS |
(2014) "RNA
Clamping by Vasa Assembles a Pirna Amplifier Complex on
Transposon Transcripts."
Cell(Cambridge,Mass.), 157,
1698. doi: 10.1016/J.CELL.2014.05.018.
|
Crystal structure of the bombyx mori vasa helicase
(e339q) in complex with RNA,adp and pi . SNAP output
|
4d5l
|
ribosome |
cryo-EM (9.0 Å) |
Muhs M, Hilal T, Mielke T, Skabkin MA, Sanbonmatsu
KY, Pestova TV, Spahn CMT |
(2015) "Cryo-Em
of Ribosomal 80S Complexes with Termination Factors
Reveals the Translocated Cricket Paralysis Virus
Ires." Mol.Cell, 57, 422.
doi: 10.1016/J.MOLCEL.2014.12.016.
|
cryo-EM structures of ribosomal 80s complexes with
termination factors and cricket paralysis virus ires
reveal the ires in the translocated state . SNAP output
|
4d5n
|
ribosome-RNA |
cryo-EM (9.0 Å) |
Muhs M, Hilal T, Mielke T, Skabkin MA, Sanbonmatsu
KY, Pestova TV, Spahn CMT |
(2015) "Cryo-Em
of Ribosomal 80S Complexes with Termination Factors
Reveals the Translocated Cricket Paralysis Virus
Ires." Mol.Cell, 57, 422.
doi: 10.1016/J.MOLCEL.2014.12.016.
|
cryo-EM structures of ribosomal 80s complexes with
termination factors and cricket paralysis virus ires
reveal the ires in the translocated state . SNAP output
|
4d5y
|
ribosome |
cryo-EM (9.0 Å) |
Muhs M, Hilal T, Mielke T, Skabkin MA, Sanbonmatsu
KY, Pestova TV, Spahn CMT |
(2015) "Cryo-Em
Structures of Ribosomal 80S Complexes with Termination
Factors and Cricket Paralysis Virus Ires Reveal the
Ires in the Translocated State." Mol.Cell,
57, 422. doi: 10.1016/J.MOLCEL.2014.12.016.
|
cryo-EM structures of ribosomal 80s complexes with
termination factors and cricket paralysis virus ires
reveal the ires in the translocated state . SNAP output
|
4d61
|
ribosome |
cryo-EM (9.0 Å) |
Muhs M, Hilal T, Mielke T, Skabkin MA, Sanbonmatsu
KY, Pestova TV, Spahn CMT |
(2015) "Cryo-Em
of Ribosomal 80S Complexes with Termination Factors
Reveals the Translocated Cricket Paralysis Virus
Ires." Mol.Cell, 57, 422.
doi: 10.1016/J.MOLCEL.2014.12.016.
|
cryo-EM structures of ribosomal 80s complexes with
termination factors and cricket paralysis virus ires
reveal the ires in the translocated state . SNAP output
|
4d67
|
ribosome |
cryo-EM (9.0 Å) |
Muhs M, Hilal T, Mielke T, Skabkin MA, Sanbonmatsu
KY, Pestova TV, Spahn CMT |
(2015) "Cryo-Em
Structures of Ribosomal 80S Complexes with Termination
Factors and Cricket Paralysis Virus Ires Reveal the
Ires in the Translocated State." Mol.Cell,
57, 422. doi: 10.1016/J.MOLCEL.2014.12.016.
|
cryo-EM structures of ribosomal 80s complexes with
termination factors and cricket paralysis virus ires
reveal the ires in the translocated state . SNAP output
|
4db2
|
RNA binding protein-RNA |
X-ray (3.157 Å) |
Mallam AL, Del Campo M, Gilman B, Sidote DJ,
Lambowitz AM |
(2012) "Structural
basis for RNA-duplex recognition and unwinding by the
DEAD-box helicase Mss116p." Nature,
490, 121-125. doi: 10.1038/nature11402.
|
Mss116p dead-box helicase domain 2 bound to an RNA
duplex . SNAP output
|
4dr1
|
ribosome |
X-ray (3.6 Å) |
Demirci H, Murphy F, Murphy E, Gregory ST, Dahlberg
AE, Jogl G |
(2013) "A
structural basis for streptomycin-induced misreading of
the genetic code." Nat Commun,
4, 1355. doi: 10.1038/ncomms2346.
|
Crystal structure of the apo 30s ribosomal subunit from
thermus thermophilus (hb8) . SNAP output
|
4dr2
|
ribosome-antibiotic |
X-ray (3.249 Å) |
Demirci H, Murphy F, Murphy E, Gregory ST, Dahlberg
AE, Jogl G |
(2013) "A
structural basis for streptomycin-induced misreading of
the genetic code." Nat Commun,
4, 1355. doi: 10.1038/ncomms2346.
|
Crystal structure of the thermus thermophilus (hb8) 30s
ribosomal subunit with multiple copies of paromomycin
molecules bound . SNAP
output
|
4dr3
|
ribosome-antibiotic |
X-ray (3.348 Å) |
Demirci H, Murphy F, Murphy E, Gregory ST, Dahlberg
AE, Jogl G |
(2013) "A
structural basis for streptomycin-induced misreading of
the genetic code." Nat Commun,
4, 1355. doi: 10.1038/ncomms2346.
|
Crystal structure of the thermus thermophilus (hb8) 30s
ribosomal subunit with streptomycin bound . SNAP output
|
4dr4
|
ribosome-antibiotic |
X-ray (3.969 Å) |
Demirci H, Murphy F, Murphy E, Gregory ST, Dahlberg
AE, Jogl G |
(2013) "A
structural basis for streptomycin-induced misreading of
the genetic code." Nat Commun,
4, 1355. doi: 10.1038/ncomms2346.
|
Crystal structure of the thermus thermophilus (hb8) 30s
ribosomal subunit with codon, cognate transfer RNA
anticodon stem-loop and multiple copies of paromomycin
molecules bound . SNAP
output
|
4dr5
|
ribosome-antibiotic |
X-ray (3.45 Å) |
Demirci H, Murphy F, Murphy E, Gregory ST, Dahlberg
AE, Jogl G |
(2013) "A
structural basis for streptomycin-induced misreading of
the genetic code." Nat Commun,
4, 1355. doi: 10.1038/ncomms2346.
|
Crystal structure of the thermus thermophilus (hb8) 30s
ribosomal subunit with codon, crystallographically
disordered cognate transfer RNA anticodon stem-loop and
streptomycin bound . SNAP output
|
4dr6
|
ribosome-antibiotic |
X-ray (3.3 Å) |
Demirci H, Murphy F, Murphy E, Gregory ST, Dahlberg
AE, Jogl G |
(2013) "A
structural basis for streptomycin-induced misreading of
the genetic code." Nat Commun,
4, 1355. doi: 10.1038/ncomms2346.
|
Crystal structure of the thermus thermophilus (hb8) 30s
ribosomal subunit with codon, near-cognate transfer RNA
anticodon stem-loop mismatched at the first codon
position and streptomycin bound . SNAP output
|
4dr7
|
ribosome-antibiotic |
X-ray (3.75 Å) |
Demirci H, Murphy F, Murphy E, Gregory ST, Dahlberg
AE, Jogl G |
(2013) "A
structural basis for streptomycin-induced misreading of
the genetic code." Nat Commun,
4, 1355. doi: 10.1038/ncomms2346.
|
Crystal structure of the thermus thermophilus (hb8) 30s
ribosomal subunit with codon, crystallographically
disordered near-cognate transfer RNA anticodon
stem-loop mismatched at the second codon position, and
streptomycin bound . SNAP output
|
4duy
|
ribosome |
X-ray (3.386 Å) |
Demirci H, Murphy IV F, Murphy E, Gregory ST,
Dahlberg AE, Jogl G |
"A structural basis for streptomycin
resistance." |
Crystal structure of the thermus thermophilus 30s
ribosomal subunit with a 16s rrna mutation, u13c .
SNAP output
|
4duz
|
ribosome-antibiotic |
X-ray (3.651 Å) |
Demirci H, Murphy IV F, Murphy E, Gregory ST,
Dahlberg AE, Jogl G |
"A structural basis for streptomycin
resistance." |
Crystal structure of the thermus thermophilus 30s
ribosomal subunit with a 16s rrna mutation, u13c, bound
with streptomycin . SNAP
output
|
4dv0
|
ribosome |
X-ray (3.853 Å) |
Demirci H, Murphy IV F, Murphy E, Gregory ST,
Dahlberg AE, Jogl G |
"A structural basis for streptomycin
resistance." |
Crystal structure of the thermus thermophilus 30s
ribosomal subunit with a 16s rrna mutation, u20g .
SNAP output
|
4dv1
|
ribosome-antibiotic |
X-ray (3.849 Å) |
Demirci H, Murphy IV F, Murphy E, Gregory ST,
Dahlberg AE, Jogl G |
"A structural basis for streptomycin
resistance." |
Crystal structure of the thermus thermophilus 30s
ribosomal subunit with a 16s rrna mutation, u20g, bound
with streptomycin . SNAP
output
|
4dv2
|
ribosome |
X-ray (3.646 Å) |
Demirci H, Murphy IV F, Murphy E, Gregory ST,
Dahlberg AE, Jogl G |
"A structural basis for streptomycin
resistance." |
Crystal structure of the thermus thermophilus 30s
ribosomal subunit with a 16s rrna mutation, c912a .
SNAP output
|
4dv3
|
ribosome-antibiotic |
X-ray (3.547 Å) |
Demirci H, Murphy IV F, Murphy E, Gregory ST,
Dahlberg AE, Jogl G |
"A structural basis for streptomycin
resistance." |
Crystal structure of the thermus thermophilus 30s
ribosomal subunit with a 16s rrna mutation, c912a,
bound with streptomycin . SNAP output
|
4dv4
|
ribosome |
X-ray (3.651 Å) |
Demirci H, Murphy IV F, Murphy E, Gregory ST,
Dahlberg AE, Jogl G |
"A structural basis for streptomycin
resistance." |
Crystal structure of the thermus thermophilus 30s
ribosomal subunit with a 16s rrna mutation, a914g .
SNAP output
|
4dv5
|
ribosome-antibiotic |
X-ray (3.683 Å) |
Demirci H, Murphy IV F, Murphy E, Gregory ST,
Dahlberg AE, Jogl G |
"A structural basis for streptomycin
resistance." |
Crystal structure of the thermus thermophilus 30s
ribosomal subunit with a 16s rrna mutation, a914g,
bound with streptomycin . SNAP output
|
4dv6
|
ribosome |
X-ray (3.297 Å) |
Demirci H, Murphy IV F, Murphy E, Gregory ST,
Dahlberg AE, Jogl G |
"A structural basis for streptomycin
resistance." |
Crystal structure of the thermus thermophilus 30s
ribosomal subunit with a 16s rrna mutation, a915g .
SNAP output
|
4dv7
|
ribosome-antibiotic |
X-ray (3.294 Å) |
Demirci H, Murphy IV F, Murphy E, Gregory ST,
Dahlberg AE, Jogl G |
"A structural basis for streptomycin
resistance." |
Crystal structure of the thermus thermophilus 30s
ribosomal subunit with a 16s rrna mutation, a915g,
bound with streptomycin . SNAP output
|
4dw7
|
viral protein-RNA |
X-ray (3.08 Å) |
Krey T, Bontems F, Vonrhein C, Vaney MC, Bricogne G,
Rumenapf T, Rey FA |
(2012) "Crystal
Structure of the Pestivirus Envelope Glycoprotein
E(rns) and Mechanistic Analysis of Its Ribonuclease
Activity." Structure, 20,
862-873. doi: 10.1016/j.str.2012.03.018.
|
Crystal structure of an active-site mutant of the
glycoprotein erns from the pestivirus bvdv-1 in complex
with a cpu dinucleotide . SNAP output
|
4dwa
|
viral protein-RNA |
X-ray (3.01 Å) |
Krey T, Bontems F, Vonrhein C, Vaney MC, Bricogne G,
Rumenapf T, Rey FA |
(2012) "Crystal
Structure of the Pestivirus Envelope Glycoprotein
E(rns) and Mechanistic Analysis of Its Ribonuclease
Activity." Structure, 20,
862-873. doi: 10.1016/j.str.2012.03.018.
|
Crystal structure of an active-site mutant of the
glycoprotein erns from the pestivirus bvdv-1 in complex
with a cpupc trinucleotide . SNAP output
|
4dzs
|
RNA binding protein-RNA |
X-ray (3.14 Å) |
Valley CT, Porter DF, Qiu C, Campbell ZT, Hall TM,
Wickens M |
(2012) "Patterns
and plasticity in RNA-protein interactions enable
recruitment of multiple proteins through a single
site." Proc.Natl.Acad.Sci.USA,
109, 6054-6059. doi: 10.1073/pnas.1200521109.
|
Crystal structure of yeast puf4p RNA binding domain in
complex with ho-4be mutant RNA . SNAP output
|
4e78
|
viral protein, transferase-RNA |
X-ray (2.9 Å) |
Mosley RT, Edwards TE, Murakami E, Lam AM, Grice RL,
Du J, Sofia MJ, Furman PA, Otto MJ |
(2012) "Structure
of hepatitis C virus polymerase in complex with
primer-template RNA." J.Virol.,
86, 6503-6511. doi: 10.1128/JVI.00386-12.
|
Crystal structure of a product state assembly of hcv
ns5b genotype 2a jfh-1 isolate with beta hairpin loop
deletion bound to primer-template RNA with 3'-dg .
SNAP output
|
4e7a
|
viral protein, transferase-RNA |
X-ray (3.0 Å) |
Mosley RT, Edwards TE, Murakami E, Lam AM, Grice RL,
Du J, Sofia MJ, Furman PA, Otto MJ |
(2012) "Structure
of hepatitis C virus polymerase in complex with
primer-template RNA." J.Virol.,
86, 6503-6511. doi: 10.1128/JVI.00386-12.
|
Crystal structure of a product state assembly of hcv
ns5b genotype 2a jfh-1 isolate with beta hairpin
deletion bound to primer-template RNA with a 2',3'-ddc
. SNAP output
|
4ejt
|
transcription regulator-RNA |
X-ray (3.0 Å) |
Chang YM, Chen CK-M, Chang YC, Jeng WY, Hou MH, Wang
AH-J |
(2012) "Functional
studies of ssDNA binding ability of MarR family protein
TcaR from Staphylococcus epidermidis." Plos
One, 7, e45665. doi: 10.1371/journal.pone.0045665.
|
Staphylococcus epidermidis tcar in complex with RNA .
SNAP output
|
4erd
|
RNA binding protein-RNA |
X-ray (2.589 Å) |
Singh M, Wang Z, Koo BK, Patel A, Cascio D, Collins
K, Feigon J |
(2012) "Structural
Basis for Telomerase RNA Recognition and RNP Assembly
by the Holoenzyme La Family Protein p65."
Mol.Cell, 47, 16-26. doi:
10.1016/j.molcel.2012.05.018.
|
Crystal structure of the c-terminal domain of
tetrahymena telomerase protein p65 in complex with stem
iv of telomerase RNA . SNAP output
|
4eya
|
transcription-RNA |
X-ray (3.2 Å) |
Stagno JR, Ma B, Li J, Altieri AS, Byrd RA, Ji X |
(2012) "Crystal
structure of a plectonemic RNA supercoil." Nat
Commun, 3, 901. doi: 10.1038/ncomms1903.
|
Crystal structure of a plectonemic RNA supercoil .
SNAP output
|
4f02
|
translation-RNA |
X-ray (2.0 Å) |
Safaee N, Kozlov G, Noronha AM, Xie J, Wilds CJ,
Gehring K |
(2012) "Interdomain
Allostery Promotes Assembly of the Poly(A) mRNA Complex
with PABP and eIF4G." Mol.Cell,
48, 375-386. doi: 10.1016/j.molcel.2012.09.001.
|
Crystal structure of the pabp-binding site of eif4g in
complex with rrm1-2 of pabp and poly(a) . SNAP output
|
4f1n
|
RNA binding protein-RNA |
X-ray (3.187 Å) |
Nakanishi K, Weinberg DE, Bartel DP, Patel DJ |
(2012) "Structure
of yeast Argonaute with guide RNA."
Nature, 486, 368-374. doi:
10.1038/nature11211.
|
Crystal structure of kluyveromyces polysporus argonaute
with a guide RNA . SNAP
output
|
4f3t
|
hydrolase-RNA |
X-ray (2.25 Å) |
Elkayam E, Kuhn CD, Tocilj A, Haase AD, Greene EM,
Hannon GJ, Joshua-Tor L |
(2012) "The
Structure of Human Argonaute-2 in Complex with
miR-20a." Cell(Cambridge,Mass.),
150, 100-110. doi: 10.1016/j.cell.2012.05.017.
|
Human argonaute-2 - mir-20a complex . SNAP output
|
4fsj
|
virus |
X-ray (3.5 Å) |
Speir JA, Chen Z, Reddy VS, Johnson JE |
(2012) "Structural study of virus assembly
intermediates reveals maturation event sequence and a
staging position for externalized lytic peptides." |
Crystal structure of the virus like particle of flock
house virus . SNAP
output
|
4ftb
|
virus |
X-ray (2.7 Å) |
Speir JA, Chen Z, Reddy VS, Johnson JE |
(2012) "Structural study of virus assembly
intermediates reveals maturation event sequence and a
staging position for externalized lytic peptides." |
Crystal structure of the authentic flock house virus
particle . SNAP
output
|
4fte
|
virus |
X-ray (3.5 Å) |
Speir JA, Chen Z, Reddy VS, Johnson JE |
(2012) "Structural study of virus assembly
intermediates reveals maturation event sequence and a
staging position for externalized lytic peptides." |
Crystal structure of the d75n mutant capsid of flock
house virus . SNAP
output
|
4fts
|
virus |
X-ray (3.2 Å) |
Speir JA, Chen Z, Reddy VS, Johnson JE |
(2012) "Structural study of virus assembly
intermediates reveals maturation event sequence and a
staging position for externalized lytic peptides." |
Crystal structure of the n363t mutant of the flock
house virus capsid . SNAP output
|
4fvu
|
hydrolase-RNA |
X-ray (2.91 Å) |
Hastie KM, King LB, Zandonatti MA, Saphire EO |
(2012) "Structural
Basis for the dsRNA Specificity of the Lassa Virus NP
Exonuclease." Plos One,
7, e44211. doi: 10.1371/journal.pone.0044211.
|
Structural basis for the dsrna specificity of the lassa
virus np exonuclease . SNAP output
|
4fwt
|
translation, transferase-RNA |
X-ray (3.2 Å) |
Takeshita D, Yamashita S, Tomita K |
(2012) "Mechanism
for template-independent terminal adenylation activity
of Q beta replicase." Structure,
20, 1661-1669. doi: 10.1016/j.str.2012.07.004.
|
Complex structure of viral RNA polymerase form iii .
SNAP output
|
4g0a
|
hydrolase-RNA |
X-ray (2.1 Å) |
Hu L, Chow DC, Patton JT, Palzkill T, Estes MK,
Prasad BV |
(2012) "Crystallographic
Analysis of Rotavirus NSP2-RNA Complex Reveals Specific
Recognition of 5' GG Sequence for RTPase Activity."
J.Virol., 86, 10547-10557.
doi: 10.1128/JVI.01201-12.
|
Crystallographic analysis of rotavirus nsp2-RNA complex
reveals specific recognition of 5'-gg sequence for
rtpase activity . SNAP
output
|
4g9z
|
viral protein-RNA |
X-ray (2.03 Å) |
Jiang X, Huang Q, Wang W, Dong H, Ly H, Liang Y, Dong
C |
(2013) "Structures
of Arenaviral Nucleoproteins with Triphosphate dsRNA
Reveal a Unique Mechanism of Immune Suppression."
J.Biol.Chem., 288,
16949-16959. doi: 10.1074/jbc.M112.420521.
|
Lassa nucleoprotein with dsrna reveals novel mechanism
for immune suppression . SNAP output
|
4gcw
|
hydrolase-RNA |
X-ray (3.0 Å) |
Pellegrini O, Li de la Sierra-Gallay I, Piton J,
Gilet L, Condon C |
(2012) "Activation
of tRNA Maturation by Downstream Uracil Residues in B.
subtilis." Structure, 20,
1769-1777. doi: 10.1016/j.str.2012.08.002.
|
Crystal structure of rnase z in complex with precursor
trna(thr) . SNAP
output
|
4gha
|
viral protein,RNA binding protein-RNA |
X-ray (2.5 Å) |
Bale S, Julien JP, Bornholdt ZA, Kimberlin CR,
Halfmann P, Zandonatti MA, Kunert J, Kroon GJ, Kawaoka Y,
Macrae IJ, Wilson IA, Saphire EO |
(2012) "Marburg
Virus VP35 Can Both Fully Coat the Backbone and Cap the
Ends of dsRNA for Interferon Antagonism." Plos
Pathog., 8, e1002916. doi:
10.1371/journal.ppat.1002916.
|
Crystal structure of marburg virus vp35 RNA binding
domain bound to 12-bp dsrna . SNAP output
|
4ghl
|
transcription, viral protein-RNA |
X-ray (2.02 Å) |
Ramanan P, Edwards MR, Shabman RS, Leung DW,
Endlich-Frazier AC, Borek DM, Otwinowski Z, Liu G, Huh J,
Basler CF, Amarasinghe GK |
(2012) "Structural
basis for Marburg virus VP35-mediated immune evasion
mechanisms." Proc.Natl.Acad.Sci.USA,
109, 20661-20666. doi: 10.1073/pnas.1213559109.
|
Structural basis for marburg virus vp35 mediate immune
evasion mechanisms . SNAP output
|
4gkj
|
ribosome-antibiotic |
X-ray (3.298 Å) |
Cantara WA, Murphy FV, Demirci H, Agris PF |
(2013) "Expanded
use of sense codons is regulated by modified cytidines
in tRNA." Proc.Natl.Acad.Sci.USA,
110, 10964-10969. doi: 10.1073/pnas.1222641110.
|
Structure of the thermus thermophilus 30s ribosomal
subunit complexed with a human mitochondrial anticodon
stem loop (asl) of transfer RNA methionine (trnamet)
bound to an mrna with an aug-codon in the a-site and
paromomycin. . SNAP
output
|
4gkk
|
ribosome-antibiotic |
X-ray (3.2 Å) |
Cantara WA, Murphy FV, Demirci H, Agris PF |
(2013) "Expanded
use of sense codons is regulated by modified cytidines
in tRNA." Proc.Natl.Acad.Sci.USA,
110, 10964-10969. doi: 10.1073/pnas.1222641110.
|
Structure of the thermus thermophilus 30s ribosomal
subunit complexed with a human mitochondrial anticodon
stem loop (asl) of transfer RNA methionine (trnamet)
bound to an mrna with an aua-codon in the a-site and
paromomycin . SNAP
output
|
4gl2
|
RNA binding protein-RNA |
X-ray (3.557 Å) |
Wu B, Peisley A, Richards C, Yao H, Zeng X, Lin C,
Chu F, Walz T, Hur S |
(2013) "Structural
Basis for dsRNA Recognition, Filament Formation, and
Antiviral Signal Activation by MDA5."
Cell(Cambridge,Mass.), 152,
276-289. doi: 10.1016/j.cell.2012.11.048.
|
Structural basis for dsrna duplex backbone recognition
by mda5 . SNAP
output
|
4gv3
|
RNA binding protein-RNA |
X-ray (1.68 Å) |
Jiang X, Huang Q, Wang W, Dong H, Ly H, Liang Y, Dong
C |
(2013) "Structures
of Arenaviral Nucleoproteins with Triphosphate dsRNA
Reveal a Unique Mechanism of Immune Suppression."
J.Biol.Chem., 288,
16949-16959. doi: 10.1074/jbc.M112.420521.
|
Structures of lassa and tacaribe viral nucleoproteins
with or without 5 triphosphate dsrna substrate reveal a
unique 3 -5 exoribonuclease mechanism to suppress type
i interferon production . SNAP output
|
4gv6
|
RNA binding protein-RNA |
X-ray (1.98 Å) |
Jiang X, Huang Q, Wang W, Dong H, Ly H, Liang Y, Dong
C |
(2013) "Structures
of Arenaviral Nucleoproteins with Triphosphate dsRNA
Reveal a Unique Mechanism of Immune Suppression."
J.Biol.Chem., 288,
16949-16959. doi: 10.1074/jbc.M112.420521.
|
Structures of lassa and tacaribe viral nucleoproteins
with or without 5 triphosphate dsrna substrate reveal a
unique 3 -5 exoribonuclease mechanism to suppress type
i interferon production . SNAP output
|
4gv9
|
RNA binding protein-RNA |
X-ray (2.46 Å) |
Jiang X, Huang Q, Wang W, Dong H, Ly H, Liang Y, Dong
C |
(2013) "Structures
of Arenaviral Nucleoproteins with Triphosphate dsRNA
Reveal a Unique Mechanism of Immune Suppression."
J.Biol.Chem., 288,
16949-16959. doi: 10.1074/jbc.M112.420521.
|
Lassa nucleoprotein c-terminal domain in complex with
triphosphated dsrna soaking for 5 min . SNAP output
|
4h5o
|
viral protein-RNA |
X-ray (3.9 Å) |
Raymond DD, Piper ME, Gerrard SR, Skiniotis G, Smith
JL |
(2012) "Phleboviruses
encapsidate their genomes by sequestering RNA
bases." Proc.Natl.Acad.Sci.USA,
109, 19208-19213. doi: 10.1073/pnas.1213553109.
|
Crystal structure of rift valley fever virus
nucleocapsid protein pentamer bound to single-stranded
RNA . SNAP output
|
4h5p
|
viral protein-RNA |
X-ray (2.15 Å) |
Raymond DD, Piper ME, Gerrard SR, Skiniotis G, Smith
JL |
(2012) "Phleboviruses
encapsidate their genomes by sequestering RNA
bases." Proc.Natl.Acad.Sci.USA,
109, 19208-19213. doi: 10.1073/pnas.1213553109.
|
Crystal structure of rift valley fever virus
nucleocapsid protein tetramer bound to single-stranded
RNA . SNAP output
|
4hor
|
RNA binding protein-RNA |
X-ray (1.861 Å) |
Abbas YM, Pichlmair A, Gorna MW, Superti-Furga G,
Nagar B |
(2013) "Structural
basis for viral 5'-PPP-RNA recognition by human IFIT
proteins." Nature, 494,
60-64. doi: 10.1038/nature11783.
|
Crystal structure of full-length human ifit5 with
5`-triphosphate oligocytidine . SNAP output
|
4hos
|
RNA binding protein-RNA |
X-ray (2.0 Å) |
Abbas YM, Pichlmair A, Gorna MW, Superti-Furga G,
Nagar B |
(2013) "Structural
basis for viral 5'-PPP-RNA recognition by human IFIT
proteins." Nature, 494,
60-64. doi: 10.1038/nature11783.
|
Crystal structure of full-length human ifit5 with
5`-triphosphate oligouridine . SNAP output
|
4hot
|
RNA binding protein-RNA |
X-ray (2.501 Å) |
Abbas YM, Pichlmair A, Gorna MW, Superti-Furga G,
Nagar B |
(2013) "Structural
basis for viral 5'-PPP-RNA recognition by human IFIT
proteins." Nature, 494,
60-64. doi: 10.1038/nature11783.
|
Crystal structure of full-length human ifit5 with
5`-triphosphate oligoadenine . SNAP output
|
4ht8
|
RNA binding protein-RNA |
X-ray (1.9 Å) |
Wang W, Wang L, Wu J, Gong Q, Shi Y |
(2013) "Hfq-bridged
ternary complex is important for translation activation
of rpoS by DsrA." Nucleic Acids Res.,
41, 5938-5948. doi: 10.1093/nar/gkt276.
|
Crystal structure of e coli hfq bound to poly(a) a7 .
SNAP output
|
4ht9
|
RNA binding protein-RNA |
X-ray (1.8 Å) |
Wang W, Wang L, Wu J, Gong Q, Shi Y |
(2013) "Hfq-bridged
ternary complex is important for translation activation
of rpoS by DsrA." Nucleic Acids Res.,
41, 5938-5948. doi: 10.1093/nar/gkt276.
|
Crystal structure of e coli hfq bound to two rnas .
SNAP output
|
4i67
|
hydrolase-RNA |
X-ray (2.33 Å) |
Steimer L, Wurm JP, Linden MH, Rudolph MG, Wohnert J,
Klostermeier D |
(2013) "Recognition
of two distinct elements in the RNA substrate by the
RNA-binding domain of the T. thermophilus DEAD box
helicase Hera." Nucleic Acids Res.,
41, 6259-6272. doi: 10.1093/nar/gkt323.
|
Crystal structure of the rrm domain of RNA helicase
hera from t. thermophilus in complex with gggc RNA .
SNAP output
|
4ifd
|
hydrolase-RNA |
X-ray (2.805 Å) |
Makino DL, Baumgartner M, Conti E |
(2013) "Crystal
structure of an RNA-bound 11-subunit eukaryotic exosome
complex." Nature, 495,
70-75. doi: 10.1038/nature11870.
|
Crystal structure of an 11-subunit eukaryotic exosome
complex bound to RNA . SNAP output
|
4ig8
|
transferase-RNA |
X-ray (2.7 Å) |
Donovan J, Dufner M, Korennykh A |
(2013) "Structural
basis for cytosolic double-stranded RNA surveillance by
human oligoadenylate synthetase 1."
Proc.Natl.Acad.Sci.USA, 110,
1652-1657. doi: 10.1073/pnas.1218528110.
|
Structural basis for cytosolic double-stranded RNA
surveillance by human oas1 . SNAP output
|
4ii9
|
transferase-peptide-RNA |
X-ray (1.66 Å) |
Fonvielle M, Li de La Sierra-Gallay I, El-Sagheer AH,
Lecerf M, Patin D, Mellal D, Mayer C, Blanot D, Gale N,
Brown T, van Tilbeurgh H, Etheve-Quelquejeu M, Arthur
M |
(2013) "The
Structure of FemXWv in Complex with a Peptidyl-RNA
Conjugate: Mechanism of Aminoacyl Transfer from
Ala-tRNA(Ala) to Peptidoglycan Precursors."
Angew.Chem.Int.Ed.Engl., 52,
7278-7281. doi: 10.1002/anie.201301411.
|
Crystal structure of weissella viridescens femxvv
non-ribosomal amino acid transferase in complex with a
peptidyl-RNA conjugate . SNAP output
|
4ijs
|
RNA binding protein-RNA |
X-ray (3.2 Å) |
Li BB, Wang Q, Pan X, Fernandez de Castro I, Sun Y,
Guo Y, Tao X, Risco C, Sui SF, Lou ZY |
(2013) "Bunyamwera
virus possesses a distinct nucleocapsid protein to
facilitate genome encapsidation."
Proc.Natl.Acad.Sci.USA, 110,
9048-9053. doi: 10.1073/pnas.1222552110.
|
Crystal structure of nucleocapsid protein encoded by
the prototypic member of orthobunyavirus . SNAP output
|
4ill
|
hydrolase-RNA |
X-ray (2.484 Å) |
Shao Y, Li H |
(2013) "Recognition
and cleavage of a nonstructured CRISPR RNA by its
processing endoribonuclease Cas6."
Structure, 21, 385-393. doi:
10.1016/j.str.2013.01.010.
|
Recognition and cleavage of a non-structured crispr RNA
by its processing endoribonuclease cas6 . SNAP output
|
4ilm
|
hydrolase-RNA |
X-ray (3.068 Å) |
Shao Y, Li H |
(2013) "Recognition
and cleavage of a nonstructured CRISPR RNA by its
processing endoribonuclease Cas6."
Structure, 21, 385-393. doi:
10.1016/j.str.2013.01.010.
|
Crispr RNA processing endoribonuclease . SNAP output
|
4io9
|
ribosome-ribosome inhibitor |
X-ray (3.2 Å) |
Magee TV, Han S, McCurdy SP, Nguyen TT, Granskog K,
Marr ES, Maguire BA, Huband MD, Chen JM, Subashi TA,
Shanmugasundaram V |
(2013) "Novel
3-O-carbamoyl erythromycin A derivatives (carbamolides)
with activity against resistant staphylococcal and
streptococcal isolates."
Bioorg.Med.Chem.Lett., 23,
1727-1731. doi: 10.1016/j.bmcl.2013.01.067.
|
Crystal structure of compound 4d bound to large
ribosomal subunit (50s) from deinococcus radiodurans .
SNAP output
|
4ioa
|
ribosome-ribosome inhibitor |
X-ray (3.2 Å) |
Magee TV, Han S, McCurdy SP, Nguyen TT, Granskog K,
Marr ES, Maguire BA, Huband MD, Chen JM, Subashi TA,
Shanmugasundaram V |
(2013) "Novel
3-O-carbamoyl erythromycin A derivatives (carbamolides)
with activity against resistant staphylococcal and
streptococcal isolates."
Bioorg.Med.Chem.Lett., 23,
1727-1731. doi: 10.1016/j.bmcl.2013.01.067.
|
Crystal structure of compound 4e bound to large
ribosomal subunit (50s) from deinococcus radiodurans .
SNAP output
|
4ioc
|
ribosome-ribosome inhibitor |
X-ray (3.6 Å) |
Magee TV, Han S, McCurdy SP, Nguyen TT, Granskog K,
Marr ES, Maguire BA, Huband MD, Chen JM, Subashi TA,
Shanmugasundaram V |
(2013) "Novel
3-O-carbamoyl erythromycin A derivatives (carbamolides)
with activity against resistant staphylococcal and
streptococcal isolates."
Bioorg.Med.Chem.Lett., 23,
1727-1731. doi: 10.1016/j.bmcl.2013.01.067.
|
Crystal structure of compound 4f bound to large
ribosomal subunit (50s) from deinococcus radiodurans .
SNAP output
|
4iqx
|
transferase-DNA |
X-ray (2.5 Å) |
Agudo R, Ferrer-Orta C, Arias A, de la Higuera I,
Perales C, Perez-Luque R, Verdaguer N, Domingo E |
(2010) "A
multi-step process of viral adaptation to a mutagenic
nucleoside analogue by modulation of transition types
leads to extinction-escape." Plos Pathog.,
6, e1001072. doi: 10.1371/journal.ppat.1001072.
|
Mutant p44s p169s m296i of foot-and-mouth disease virus
RNA-dependent RNA polymerase . SNAP output
|
4j1g
|
viral protein-RNA |
X-ray (2.789 Å) |
Niu F, Shaw N, Wang YE, Jiao L, Ding W, Li X, Zhu P,
Upur H, Ouyang S, Cheng G, Liu ZJ |
(2013) "Structure
of the Leanyer orthobunyavirus nucleoprotein-RNA
complex reveals unique architecture for RNA
encapsidation." Proc.Natl.Acad.Sci.USA,
110, 9054-9059. doi: 10.1073/pnas.1300035110.
|
Leanyer orthobunyavirus nucleoprotein-ssrna complex .
SNAP output
|
4j39
|
RNA binding protein-RNA |
X-ray (1.7 Å) |
Katorcha E, Tamjar J, Popov AN, Malinina L |
"Procrustean bed of RNA silencing suppression." |
Crystal structure of p19 in complex with double-helical
19mer RNA p(cag)3c(cug)3 . SNAP output
|
4j5v
|
RNA binding protein-RNA |
X-ray (2.15 Å) |
Tamjar J, Katorcha E, Cabo A, Delgado S, Popov AN,
Malinina L |
"Structural insights into CNG-repetitive RNAs
associated with human Trinucleotide Repeat Expansion
Diseases (TREDs)." |
Crystal structure of p19 in complex with double-helical
RNA 19mer p(cag)3c(ccg)3 . SNAP output
|
4j7l
|
hydrolase-RNA |
X-ray (1.8 Å) |
Jiao X, Chang JH, Kilic T, Tong L, Kiledjian M |
(2013) "A
mammalian pre-mRNA 5' end capping quality control
mechanism and an unexpected link of capping to pre-mRNA
processing." Mol.Cell,
50, 104-115. doi: 10.1016/j.molcel.2013.02.017.
|
Crystal structure of mouse dxo in complex with product
RNA and two magnesium ions . SNAP output
|
4j7m
|
hydrolase-RNA |
X-ray (1.7 Å) |
Jiao X, Chang JH, Kilic T, Tong L, Kiledjian M |
(2013) "A
mammalian pre-mRNA 5' end capping quality control
mechanism and an unexpected link of capping to pre-mRNA
processing." Mol.Cell,
50, 104-115. doi: 10.1016/j.molcel.2013.02.017.
|
Crystal structure of mouse dxo in complex with
substrate mimic RNA and calcium ion . SNAP output
|
4jgn
|
RNA binding protein-RNA |
X-ray (1.86 Å) |
Katorcha E, Tamjar J, Popov AN, Malinina L |
"Procrustean bed of RNA silencing suppression." |
Crystal structure of RNA silencing suppressor p19 with
1nt-5'-overhanging double-helical RNA 20mer
puug(cug)5cu . SNAP
output
|
4ji0
|
ribosome |
X-ray (3.492 Å) |
Demirci H, Wang L, Murphy FV, Murphy EL, Carr JF,
Blanchard SC, Jogl G, Dahlberg AE, Gregory ST |
(2013) "The
central role of protein S12 in organizing the structure
of the decoding site of the ribosome."
Rna, 19, 1791-1801. doi:
10.1261/rna.040030.113.
|
Crystal structure of 30s ribosomal subunit from thermus
thermophilus . SNAP
output
|
4ji1
|
ribosome-antibiotic |
X-ray (3.144 Å) |
Demirci H, Wang L, Murphy FV, Murphy EL, Carr JF,
Blanchard SC, Jogl G, Dahlberg AE, Gregory ST |
(2013) "The
central role of protein S12 in organizing the structure
of the decoding site of the ribosome."
Rna, 19, 1791-1801. doi:
10.1261/rna.040030.113.
|
Crystal structure of 30s ribosomal subunit from thermus
thermophilus . SNAP
output
|
4ji2
|
ribosome |
X-ray (3.64 Å) |
Demirci H, Wang L, Murphy FV, Murphy EL, Carr JF,
Blanchard SC, Jogl G, Dahlberg AE, Gregory ST |
(2013) "The
central role of protein S12 in organizing the structure
of the decoding site of the ribosome."
Rna, 19, 1791-1801. doi:
10.1261/rna.040030.113.
|
Crystal structure of 30s ribosomal subunit from thermus
thermophilus . SNAP
output
|
4ji3
|
ribosome |
X-ray (3.35 Å) |
Demirci H, Wang L, Murphy FV, Murphy EL, Carr JF,
Blanchard SC, Jogl G, Dahlberg AE, Gregory ST |
(2013) "The
central role of protein S12 in organizing the structure
of the decoding site of the ribosome."
Rna, 19, 1791-1801. doi:
10.1261/rna.040030.113.
|
Crystal structure of 30s ribosomal subunit from thermus
thermophilus . SNAP
output
|
4ji4
|
ribosome-antibiotic |
X-ray (3.692 Å) |
Demirci H, Wang L, Murphy FV, Murphy EL, Carr JF,
Blanchard SC, Jogl G, Dahlberg AE, Gregory ST |
(2013) "The
central role of protein S12 in organizing the structure
of the decoding site of the ribosome."
Rna, 19, 1791-1801. doi:
10.1261/rna.040030.113.
|
Crystal structure of 30s ribosomal subunit from thermus
thermophilus . SNAP
output
|
4ji5
|
ribosome-antibiotic |
X-ray (3.85 Å) |
Demirci H, Wang L, Murphy FV, Murphy EL, Carr JF,
Blanchard SC, Jogl G, Dahlberg AE, Gregory ST |
(2013) "The
central role of protein S12 in organizing the structure
of the decoding site of the ribosome."
Rna, 19, 1791-1801. doi:
10.1261/rna.040030.113.
|
Crystal structure of 30s ribosomal subunit from thermus
thermophilus . SNAP
output
|
4ji6
|
ribosome |
X-ray (3.55 Å) |
Demirci H, Wang L, Murphy FV, Murphy EL, Carr JF,
Blanchard SC, Jogl G, Dahlberg AE, Gregory ST |
(2013) "The
central role of protein S12 in organizing the structure
of the decoding site of the ribosome."
Rna, 19, 1791-1801. doi:
10.1261/rna.040030.113.
|
Crystal structure of 30s ribosomal subunit from thermus
thermophilus . SNAP
output
|
4ji7
|
ribosome |
X-ray (3.5 Å) |
Demirci H, Wang L, Murphy FV, Murphy EL, Carr JF,
Blanchard SC, Jogl G, Dahlberg AE, Gregory ST |
(2013) "The
central role of protein S12 in organizing the structure
of the decoding site of the ribosome."
Rna, 19, 1791-1801. doi:
10.1261/rna.040030.113.
|
Crystal structure of 30s ribosomal subunit from thermus
thermophilus . SNAP
output
|
4ji8
|
ribosome-antibiotic |
X-ray (3.742 Å) |
Demirci H, Wang L, Murphy FV, Murphy EL, Carr JF,
Blanchard SC, Jogl G, Dahlberg AE, Gregory ST |
(2013) "The
central role of protein S12 in organizing the structure
of the decoding site of the ribosome."
Rna, 19, 1791-1801. doi:
10.1261/rna.040030.113.
|
Crystal structure of 30s ribosomal subunit from thermus
thermophilus . SNAP
output
|
4jk0
|
RNA binding protein-RNA |
X-ray (2.3 Å) |
Katorcha E, Tamjar J, Popov AN, Malinina L |
"Procrustean bed of RNA silencing suppression." |
Crystal structure of t89q-mutant of RNA silencing
suppressor p19 with 2nt-5'-overhanging double-helical
RNA 21mer puuug(cug)5cu . SNAP output
|
4jng
|
viral protein-RNA |
X-ray (2.12 Å) |
Dong HH, Li P, Bottcher B, Elliott RM, Dong CJ |
(2013) "Crystal
structure of Schmallenberg orthobunyavirus
nucleoprotein-RNA complex reveals a novel RNA
sequestration mechanism." Rna,
19, 1129-1136. doi: 10.1261/rna.039057.113.
|
Schmallenberg virus nucleoprotein-RNA complex .
SNAP output
|
4jnx
|
RNA binding protein-RNA |
X-ray (1.95 Å) |
Katorcha E, Tamjar J, Popov AN, Malinina L |
"Procrustean bed of RNA silencing suppression." |
Crystal structure of RNA silencing suppressor p19
complexed with double-helical RNA 20mer pg(cug)6c .
SNAP output
|
4jv5
|
ribosome |
X-ray (3.162 Å) |
Fernandez IS, Ng CL, Kelley AC, Wu G, Yu YT,
Ramakrishnan V |
(2013) "Unusual
base pairing during the decoding of a stop codon by the
ribosome." Nature, 500,
107-110. doi: 10.1038/nature12302.
|
Crystal structures of pseudouridinilated stop codons
with asls . SNAP
output
|
4jvh
|
RNA binding protein |
X-ray (3.501 Å) |
Teplova M, Hafner M, Teplov D, Essig K, Tuschl T,
Patel DJ |
(2013) "Structure-function
studies of STAR family Quaking proteins bound to their
in vivo RNA target sites." Genes Dev.,
27, 928-940. doi: 10.1101/gad.216531.113.
|
Structure of the star domain of quaking protein in
complex with RNA . SNAP
output
|
4jvy
|
RNA binding protein |
X-ray (2.853 Å) |
Teplova M, Hafner M, Teplov D, Essig K, Tuschl T,
Patel DJ |
(2013) "Structure-function
studies of STAR family Quaking proteins bound to their
in vivo RNA target sites." Genes Dev.,
27, 928-940. doi: 10.1101/gad.216531.113.
|
Structure of the star (signal transduction and
activation of RNA) domain of gld-1 bound to RNA .
SNAP output
|
4jxx
|
ligase-RNA |
X-ray (2.3 Å) |
Rodriguez-Hernandez A, Spears JL, Gaston KW, Limbach
PA, Gamper H, Hou YM, Kaiser R, Agris PF, Perona JJ |
(2013) "Structural
and Mechanistic Basis for Enhanced Translational
Efficiency by 2-Thiouridine at the tRNA Anticodon
Wobble Position." J.Mol.Biol.,
425, 3888-3906. doi: 10.1016/j.jmb.2013.05.018.
|
Crystal structure of e coli e. coli glutaminyl-trna
synthetase bound to trna(gln)(cug) and atp from novel
cryostabilization conditions . SNAP output
|
4jxz
|
ligase-RNA |
X-ray (2.4 Å) |
Rodriguez-Hernandez A, Spears JL, Gaston KW, Limbach
PA, Gamper H, Hou YM, Kaiser R, Agris PF, Perona JJ |
(2013) "Structural
and Mechanistic Basis for Enhanced Translational
Efficiency by 2-Thiouridine at the tRNA Anticodon
Wobble Position." J.Mol.Biol.,
425, 3888-3906. doi: 10.1016/j.jmb.2013.05.018.
|
Structure of e. coli glutaminyl-trna synthetase bound
to atp and a trna(gln) acceptor containing a uug
anticodon . SNAP
output
|
4jya
|
ribosome |
X-ray (3.098 Å) |
Fernandez IS, Ng CL, Kelley AC, Wu G, Yu YT,
Ramakrishnan V |
(2013) "Unusual
base pairing during the decoding of a stop codon by the
ribosome." Nature, 500,
107-110. doi: 10.1038/nature12302.
|
Crystal structures of pseudouridinilated stop codons
with asls . SNAP
output
|
4jyz
|
ligase-RNA |
X-ray (2.5 Å) |
Rodriguez-Hernandez A, Spears JL, Gaston KW, Limbach
PA, Gamper H, Hou YM, Kaiser R, Agris PF, Perona JJ |
(2013) "Structural
and Mechanistic Basis for Enhanced Translational
Efficiency by 2-Thiouridine at the tRNA Anticodon
Wobble Position." J.Mol.Biol.,
425, 3888-3906. doi: 10.1016/j.jmb.2013.05.018.
|
Crystal structure of e. coli glutaminyl-trna synthetase
bound to atp and native trna(gln) containing the
cmnm5s2u34 anticodon wobble base . SNAP output
|
4jzv
|
hydrolase-RNA |
X-ray (2.2 Å) |
Piton J, Larue V, Thillier Y, Dorleans A, Pellegrini
O, Li de la Sierra-Gallay I, Vasseur JJ, Debart F, Tisne
C, Condon C |
(2013) "Bacillus
subtilis RNA deprotection enzyme RppH recognizes
guanosine in the second position of its
substrates." Proc.Natl.Acad.Sci.USA,
110, 8858-8863. doi: 10.1073/pnas.1221510110.
|
Crystal structure of the bacillus subtilis
pyrophosphohydrolase bsrpph bound to a non-hydrolysable
triphosphorylated dinucleotide RNA (pcp-pgpg) - second
guanosine residue in guanosine binding pocket .
SNAP output
|
4k0k
|
ribosome |
X-ray (3.4 Å) |
Fernandez IS, Ng CL, Kelley AC, Wu G, Yu YT,
Ramakrishnan V |
(2013) "Unusual
base pairing during the decoding of a stop codon by the
ribosome." Nature, 500,
107-110. doi: 10.1038/nature12302.
|
Crystal structure of the thermus thermophilus 30s
ribosomal subunit complexed with a serine-asl and mrna
containing a stop codon . SNAP output
|
4k4s
|
transferase-RNA |
X-ray (2.4 Å) |
Gong P, Kortus MG, Nix JC, Davis RE, Peersen OB |
(2013) "Structures
of coxsackievirus, rhinovirus, and poliovirus
polymerase elongation complexes solved by engineering
RNA mediated crystal contacts." Plos One,
8, e60272. doi: 10.1371/journal.pone.0060272.
|
Poliovirus polymerase elongation complex (r3_form) .
SNAP output
|
4k4t
|
transferase-RNA |
X-ray (2.75 Å) |
Gong P, Kortus MG, Nix JC, Davis RE, Peersen OB |
(2013) "Structures
of coxsackievirus, rhinovirus, and poliovirus
polymerase elongation complexes solved by engineering
RNA mediated crystal contacts." Plos One,
8, e60272. doi: 10.1371/journal.pone.0060272.
|
Poliovirus polymerase elongation complex (r4_form) .
SNAP output
|
4k4u
|
transferase-RNA |
X-ray (2.85 Å) |
Gong P, Kortus MG, Nix JC, Davis RE, Peersen OB |
(2013) "Structures
of coxsackievirus, rhinovirus, and poliovirus
polymerase elongation complexes solved by engineering
RNA mediated crystal contacts." Plos One,
8, e60272. doi: 10.1371/journal.pone.0060272.
|
Poliovirus polymerase elongation complex (r5_form) .
SNAP output
|
4k4v
|
transferase-RNA |
X-ray (2.63 Å) |
Gong P, Kortus MG, Nix JC, Davis RE, Peersen OB |
(2013) "Structures
of coxsackievirus, rhinovirus, and poliovirus
polymerase elongation complexes solved by engineering
RNA mediated crystal contacts." Plos One,
8, e60272. doi: 10.1371/journal.pone.0060272.
|
Poliovirus polymerase elongation complex (r5+1_form) .
SNAP output
|
4k4w
|
transferase-RNA |
X-ray (2.69 Å) |
Gong P, Kortus MG, Nix JC, Davis RE, Peersen OB |
(2013) "Structures
of coxsackievirus, rhinovirus, and poliovirus
polymerase elongation complexes solved by engineering
RNA mediated crystal contacts." Plos One,
8, e60272. doi: 10.1371/journal.pone.0060272.
|
Poliovirus polymerase elongation complex (r5+2_form) .
SNAP output
|
4k4x
|
transferase-RNA |
X-ray (2.37 Å) |
Gong P, Kortus MG, Nix JC, Davis RE, Peersen OB |
(2013) "Structures
of coxsackievirus, rhinovirus, and poliovirus
polymerase elongation complexes solved by engineering
RNA mediated crystal contacts." Plos One,
8, e60272. doi: 10.1371/journal.pone.0060272.
|
Coxsackievirus b3 polymerase elongation complex
(r2_form), RNA . SNAP
output
|
4k4y
|
transferase-RNA |
X-ray (2.72 Å) |
Gong P, Kortus MG, Nix JC, Davis RE, Peersen OB |
(2013) "Structures
of coxsackievirus, rhinovirus, and poliovirus
polymerase elongation complexes solved by engineering
RNA mediated crystal contacts." Plos One,
8, e60272. doi: 10.1371/journal.pone.0060272.
|
Coxsackievirus b3 polymerase elongation complex
(r2+1_form) . SNAP
output
|
4k4z
|
transferase-RNA |
X-ray (2.17 Å) |
Gong P, Kortus MG, Nix JC, Davis RE, Peersen OB |
(2013) "Structures
of coxsackievirus, rhinovirus, and poliovirus
polymerase elongation complexes solved by engineering
RNA mediated crystal contacts." Plos One,
8, e60272. doi: 10.1371/journal.pone.0060272.
|
Coxsackievirus b3 polymerase elongation complex
(r2_mg_form) . SNAP
output
|
4k50
|
transferase-RNA |
X-ray (2.93 Å) |
Gong P, Kortus MG, Nix JC, Davis RE, Peersen OB |
(2013) "Structures
of coxsackievirus, rhinovirus, and poliovirus
polymerase elongation complexes solved by engineering
RNA mediated crystal contacts." Plos One,
8, e60272. doi: 10.1371/journal.pone.0060272.
|
Rhinovirus 16 polymerase elongation complex (r1_form) .
SNAP output
|
4khp
|
ribosome-antibiotic |
X-ray (3.1 Å) |
Tourigny DS, Fernandez IS, Kelley AC, Vakiti RR,
Chattopadhyay AK, Dorich S, Hanessian S, Ramakrishnan
V |
(2013) "Crystal
Structure of a Bioactive Pactamycin Analog Bound to the
30S Ribosomal Subunit." J.Mol.Biol.,
425, 3907-3910. doi: 10.1016/j.jmb.2013.05.004.
|
Structure of the thermus thermophilus 30s ribosomal
subunit in complex with de-6-msa-pactamycin . SNAP output
|
4kji
|
RNA binding protein-RNA |
X-ray (3.2 Å) |
Morris ER, Hall G, Li C, Heeb S, Kulkarni RV,
Lovelock L, Silistre H, Messina M, Camara M, Emsley J,
Williams P, Searle MS |
(2013) "Structural
Rearrangement in an RsmA/CsrA Ortholog of Pseudomonas
aeruginosa Creates a Dimeric RNA-Binding Protein,
RsmN." Structure, 21,
1659-1671. doi: 10.1016/j.str.2013.07.007.
|
Novel re-arrangement of an rsma-csra family protein to
create a structurally distinct new RNA-binding family
member . SNAP output
|
4knq
|
RNA binding protein-RNA |
X-ray (1.82 Å) |
Tamjar J, Katorcha E, Cabo A, Delgado S, Popov AN,
Malinina L |
"Structural insights into CNG-repetitive RNAs
associated with human Trinucleotide Repeat Expansion
Diseases (TREDs)." |
Crystal structure of 1nt-5'-overhanging double-helical
ccg-repetitive RNA 20mer complexed with rss p19 .
SNAP output
|
4kq0
|
RNA binding protein-RNA |
X-ray (2.1 Å) |
Tamjar J, Katorcha E, Cabo A, Delgado S, Popov AN,
Malinina L |
"Structural insights into CNG-repetitive RNAs
associated with human Trinucleotide Repeat Expansion
Diseases (TREDs)." |
Crystal structure of double-helical cgg-repetitive RNA
19mer complexed with rss p19 . SNAP output
|
4kr2
|
ligase-RNA |
X-ray (3.292 Å) |
Qin X, Hao Z, Tian Q, Zhang Z, Zhou C, Xie W |
(2014) "Cocrystal
Structures of Glycyl-tRNA Synthetase in Complex with
tRNA Suggest Multiple Conformational States in
Glycylation." J.Biol.Chem.,
289, 20359-20369. doi: 10.1074/jbc.M114.557249.
|
Glycyl-trna synthetase in complex with trna-gly .
SNAP output
|
4kr3
|
ligase-RNA |
X-ray (3.235 Å) |
Qin X, Hao Z, Tian Q, Zhang Z, Zhou C, Xie W |
(2014) "Cocrystal
Structures of Glycyl-tRNA Synthetase in Complex with
tRNA Suggest Multiple Conformational States in
Glycylation." J.Biol.Chem.,
289, 20359-20369. doi: 10.1074/jbc.M114.557249.
|
Glycyl-trna synthetase mutant e71g in complex with
trna-gly . SNAP
output
|
4kr6
|
transferase-RNA |
X-ray (2.85 Å) |
Neumann P, Lakomek K, Naumann PT, Erwin WM, Lauhon
CT, Ficner R |
(2014) "Crystal
structure of a 4-thiouridine synthetase-RNA complex
reveals specificity of tRNA U8 modification."
Nucleic Acids Res., 42,
6673-6685. doi: 10.1093/nar/gku249.
|
Crystal structure of a 4-thiouridine synthetase - RNA
complex . SNAP
output
|
4kr7
|
transferase-RNA |
X-ray (3.421 Å) |
Neumann P, Lakomek K, Naumann PT, Erwin WM, Lauhon
CT, Ficner R |
(2014) "Crystal
structure of a 4-thiouridine synthetase-RNA complex
reveals specificity of tRNA U8 modification."
Nucleic Acids Res., 42,
6673-6685. doi: 10.1093/nar/gku249.
|
Crystal structure of a 4-thiouridine synthetase - RNA
complex with bound atp . SNAP output
|
4kr9
|
transferase-RNA |
X-ray (3.5 Å) |
Neumann P, Lakomek K, Naumann PT, Erwin WM, Lauhon
CT, Ficner R |
(2014) "Crystal
structure of a 4-thiouridine synthetase-RNA complex
reveals specificity of tRNA U8 modification."
Nucleic Acids Res., 42,
6673-6685. doi: 10.1093/nar/gku249.
|
Crystal structure of a 4-thiouridine synthetase - RNA
complex at 3.5 angstrom resolution . SNAP output
|
4kre
|
transcription-RNA |
X-ray (1.754 Å) |
Faehnle CR, Elkayam E, Haase AD, Hannon GJ,
Joshua-Tor L |
(2013) "The
making of a slicer: activation of human
argonaute-1." Cell Rep,
3, 1901-1909. doi: 10.1016/j.celrep.2013.05.033.
|
Structure of human argonaute-1 bound to endogenous sf9
RNA . SNAP output
|
4krf
|
transcription-RNA |
X-ray (2.101 Å) |
Faehnle CR, Elkayam E, Haase AD, Hannon GJ,
Joshua-Tor L |
(2013) "The
making of a slicer: activation of human
argonaute-1." Cell Rep,
3, 1901-1909. doi: 10.1016/j.celrep.2013.05.033.
|
Structure of human argonaute-1 let-7 complex . SNAP output
|
4ktg
|
RNA binding protein-RNA |
X-ray (1.92 Å) |
Tamjar J, Katorcha E, Cabo A, Delgado S, Popov AN,
Malinina L |
"Structural insights into CNG-repetitive RNAs
associated with human Trinucleotide Repeat Expansion
Diseases (TREDs)." |
Crystal structure of double-helical ggc-repetitive RNA
19mer complexed with rss p19 . SNAP output
|
4kvb
|
ribosome |
X-ray (4.198 Å) |
Connetti JL, Murphy EL, Dahlberg AE, Gregory ST, Jogl
G |
"Structural robustness of the ribosome inferred from
the X-ray crystal structure of a 30S ribosomal subunit
lacking ribosomal protein S17." |
Thermus thermophilus hb27 30s ribosomal subunit lacking
ribosomal protein s17 . SNAP output
|
4kzd
|
immune system-RNA |
X-ray (2.186 Å) |
Huang H, Suslov NB, Li NS, Shelke SA, Evans ME,
Koldobskaya Y, Rice PA, Piccirilli JA |
(2014) "A
G-quadruplex-containing RNA activates fluorescence in a
GFP-like fluorophore." Nat.Chem.Biol.,
10, 686-691. doi: 10.1038/nchembio.1561.
|
Crystal structure of an RNA aptamer in complex with
fluorophore and fab . SNAP output
|
4kze
|
immune system-RNA |
X-ray (2.404 Å) |
Huang H, Suslov NB, Li NS, Shelke SA, Evans ME,
Koldobskaya Y, Rice PA, Piccirilli JA |
(2014) "A
G-quadruplex-containing RNA activates fluorescence in a
GFP-like fluorophore." Nat.Chem.Biol.,
10, 686-691. doi: 10.1038/nchembio.1561.
|
Crystal structure of an RNA aptamer in complex with fab
. SNAP output
|
4l47
|
ribosome |
X-ray (3.22 Å) |
Maehigashi T, Dunkle JA, Miles SJ, Dunham CM |
(2014) "Structural
insights into +1 frameshifting promoted by expanded or
modification-deficient anticodon stem loops."
Proc.Natl.Acad.Sci.USA, 111,
12740-12745. doi: 10.1073/pnas.1409436111.
|
Crystal structure of frameshift suppressor trna sufa6
bound to codon ccc-u on the ribosome . SNAP output
|
4l71
|
ribosome |
X-ray (3.9 Å) |
Maehigashi T, Dunkle JA, Miles SJ, Dunham CM |
(2014) "Structural
insights into +1 frameshifting promoted by expanded or
modification-deficient anticodon stem loops."
Proc.Natl.Acad.Sci.USA, 111,
12740-12745. doi: 10.1073/pnas.1409436111.
|
Crystal structure of frameshift suppressor trna sufa6
bound to codon ccc-a on the ribosome . SNAP output
|
4l8h
|
structural protein |
X-ray (2.4 Å) |
Rumnieks J, Tars K |
(2014) "Crystal
structure of the bacteriophage q beta coat protein in
complex with the RNA operator of the replicase
gene." J.Mol.Biol., 426,
1039-1049. doi: 10.1016/j.jmb.2013.08.025.
|
Bacteriophage qbeta coat protein in complex with RNA
operator hairpin . SNAP
output
|
4l8r
|
RNA-RNA binding protein-hydrolase |
X-ray (2.6 Å) |
Tan D, Marzluff WF, Dominski Z, Tong L |
(2013) "Structure
of Histone Mrna Stem-Loop, Human Stem-Loop Binding
Protein, and 3'Hexo Ternary Complex."
Science, 339, 318. doi:
10.1126/SCIENCE.1228705.
|
Structure of mrna stem-loop, human stem-loop binding
protein and 3'hexo ternary complex . SNAP output
|
4lck
|
ribosomal protein-RNA |
X-ray (3.2 Å) |
Zhang J, Ferre-D'Amare AR |
(2013) "Co-crystal
structure of a T-box riboswitch stem I domain in
complex with its cognate tRNA." Nature,
500, 363-366. doi: 10.1038/nature12440.
|
Co-crystal structure of a t-box riboswitch stem i
domain in complex with its cognate trna . SNAP output
|
4lel
|
ribosome |
X-ray (3.9 Å) |
Maehigashi T, Dunkle JA, Miles SJ, Dunham CM |
(2014) "Structural
insights into +1 frameshifting promoted by expanded or
modification-deficient anticodon stem loops."
Proc.Natl.Acad.Sci.USA, 111,
12740-12745. doi: 10.1073/pnas.1409436111.
|
Crystal structure of frameshift suppressor trna sufa6
bound to codon ccg-g on the ribosome . SNAP output
|
4lf4
|
ribosome |
X-ray (3.34 Å) |
Demirci H, Belardinelli R, Carr J, Murphy IV F, Jogl
G, Dahlberg AE, Gregory ST |
(2013) "Crystal Structure of 30S ribosomal subunit
from Thermus thermophilus." |
Crystal structure of 30s ribosomal subunit from thermus
thermophilus . SNAP
output
|
4lf5
|
ribosome |
X-ray (3.753 Å) |
Demirci H, Belardinelli R, Carr J, Murphy IV F, Jogl
G, Dahlberg AE, Gregory ST |
(2013) "Crystal Structure of 30S ribosomal subunit
from Thermus thermophilus." |
Crystal structure of 30s ribosomal subunit from thermus
thermophilus . SNAP
output
|
4lf6
|
ribosome |
X-ray (3.31 Å) |
Demirci H, Belardinelli R, Carr J, Murphy IV F, Jogl
G, Dahlberg AE, Gregory ST |
(2013) "Crystal Structure of 30S ribosomal subunit
from Thermus thermophilus." |
Crystal structure of 30s ribosomal subunit from thermus
thermophilus . SNAP
output
|
4lf7
|
ribosome |
X-ray (3.15 Å) |
Demirci H, Belardinelli R, Carr J, Murphy IV F, Jogl
G, Dahlberg AE, Gregory ST |
(2013) "Crystal Structure of 30S ribosomal subunit
from Thermus thermophilus." |
Crystal structure of 30s ribosomal subunit from thermus
thermophilus . SNAP
output
|
4lf8
|
ribosome |
X-ray (3.15 Å) |
Demirci H, Belardinelli R, Carr J, Murphy IV F, Jogl
G, Dahlberg AE, Gregory ST |
(2013) "Crystal Structure of 30S ribosomal subunit
from Thermus thermophilus." |
Crystal structure of 30s ribosomal subunit from thermus
thermophilus . SNAP
output
|
4lf9
|
ribosome |
X-ray (3.28 Å) |
Demirci H, Belardinelli R, Carr J, Murphy IV F, Jogl
G, Dahlberg AE, Gregory ST |
(2013) "Crystal Structure of 30S ribosomal subunit
from Thermus thermophilus." |
Crystal structure of 30s ribosomal subunit from thermus
thermophilus . SNAP
output
|
4lfa
|
ribosome |
X-ray (3.65 Å) |
Demirci H, Belardinelli R, Carr J, Murphy IV F, Jogl
G, Dahlberg AE, Gregory ST |
(2013) "Crystal Structure of 30S ribosomal subunit
from Thermus thermophilus." |
Crystal structure of 30s ribosomal subunit from thermus
thermophilus . SNAP
output
|
4lfb
|
ribosome |
X-ray (3.009 Å) |
Demirci H, Belardinelli R, Carr J, Murphy IV F, Jogl
G, Dahlberg AE, Gregory ST |
(2013) "Crystal Structure of 30S ribosomal subunit
from Thermus thermophilus." |
Crystal structure of 30s ribosomal subunit from thermus
thermophilus . SNAP
output
|
4lfc
|
ribosome |
X-ray (3.602 Å) |
Demirci H, Belardinelli R, Carr J, Murphy IV F, Jogl
G, Dahlberg AE, Gregory ST |
(2013) |
Crystal structure of 30s ribosomal subunit from thermus
thermophilus . SNAP
output
|
4lfz
|
ribosome |
X-ray (3.92 Å) |
Maehigashi T, Dunkle JA, Miles SJ, Dunham CM |
(2014) "Structural
insights into +1 frameshifting promoted by expanded or
modification-deficient anticodon stem loops."
Proc.Natl.Acad.Sci.USA, 111,
12740-12745. doi: 10.1073/pnas.1409436111.
|
Crystal structure of frameshift suppressor trna sufa6
bound to codon ccc-u in the absence of paromomycin .
SNAP output
|
4lg2
|
RNA binding protein-RNA |
X-ray (2.7 Å) |
Bale S, Julien JP, Bornholdt ZA, Krois AS, Wilson IA,
Saphire EO |
(2013) "Ebolavirus
VP35 coats the backbone of double-stranded RNA for
interferon antagonism." J.Virol.,
87, 10385-10388. doi: 10.1128/JVI.01452-13.
|
Crystal structure of reston ebola virus vp35 RNA
binding domain bound to 12-bp dsrna . SNAP output
|
4lgt
|
isomerase-RNA |
X-ray (1.3 Å) |
Czudnochowski N, Ashley GW, Santi DV, Alian A,
Finer-Moore J, Stroud RM |
(2014) "The
mechanism of pseudouridine synthases from a covalent
complex with RNA, and alternate specificity for U2605
versus U2604 between close homologs." Nucleic
Acids Res., 42, 2037-2048. doi:
10.1093/nar/gkt1050.
|
Crystal structure of the catalytic domain of rlub in
complex with a 21-nucleotide RNA substrate . SNAP output
|
4lj0
|
RNA binding protein |
X-ray (2.15 Å) |
Kuhlmann SI, Valkov E, Stewart M |
(2014) "Structural
basis for the molecular recognition of polyadenosine
RNA by Nab2 Zn fingers." Nucleic Acids
Res., 42, 672-680. doi: 10.1093/nar/gkt876.
|
Nab2 zn fingers complexed with polyadenosine . SNAP output
|
4lmz
|
RNA binding protein |
X-ray (2.78 Å) |
Bhatt H, Manickam Y, Bhavesh NS |
"sequence specific RNA recognition of ETR3 RRM 1-2
domains." |
Structural insight into RNA recognition by rrm1+2
domain of human etr-3 protein . SNAP output
|
4lnt
|
ribosome |
X-ray (2.94 Å) |
Maehigashi T, Dunkle JA, Miles SJ, Dunham CM |
(2014) "Structural
insights into +1 frameshifting promoted by expanded or
modification-deficient anticodon stem loops."
Proc.Natl.Acad.Sci.USA, 111,
12740-12745. doi: 10.1073/pnas.1409436111.
|
Crystal structure of trna proline (cgg) bound to codon
ccc-u on the ribosome . SNAP output
|
4lq3
|
viral protein-replication inhibitor-RNA |
X-ray (2.6 Å) |
Tarantino D, Pezzullo M, Mastrangelo E, Croci R,
Rohayem J, Robel I, Bolognesi M, Milani M |
(2014) "Naphthalene-sulfonate
inhibitors of human norovirus RNA-dependent
RNA-polymerase." Antiviral Res.,
102, 23-28. doi: 10.1016/j.antiviral.2013.11.016.
|
Crystal structure of human norovirus RNA-dependent
RNA-polymerase bound to the inhibitor ppnds . SNAP output
|
4lsk
|
ribosome |
X-ray (3.48 Å) |
Maehigashi T, Dunkle JA, Miles SJ, Dunham CM |
(2014) "Structural
insights into +1 frameshifting promoted by expanded or
modification-deficient anticodon stem loops."
Proc.Natl.Acad.Sci.USA, 111,
12740-12745. doi: 10.1073/pnas.1409436111.
|
Crystal structure of trna proline (cgg) bound to codon
ccg-g on the ribosome . SNAP output
|
4lt8
|
ribosome |
X-ray (3.14 Å) |
Maehigashi T, Dunkle JA, Miles SJ, Dunham CM |
(2014) "Structural
insights into +1 frameshifting promoted by expanded or
modification-deficient anticodon stem loops."
Proc.Natl.Acad.Sci.USA, 111,
12740-12745. doi: 10.1073/pnas.1409436111.
|
Crystal structure of trna proline (cgg) bound to codon
ccc-g on the ribosome . SNAP output
|
4m2z
|
hydrolase-RNA |
X-ray (2.85 Å) |
Court DL, Gan J, Liang YH, Shaw GX, Tropea JE,
Costantino N, Waugh DS, Ji X |
(2013) "RNase
III: Genetics and Function; Structure and
Mechanism." Annu. Rev. Genet.,
47, 405-431. doi: 10.1146/annurev-genet-110711-155618.
|
Crystal structure of rnase iii complexed with
double-stranded RNA and cmp (type ii cleavage) .
SNAP output
|
4m30
|
hydrolase-RNA |
X-ray (2.501 Å) |
Court DL, Gan J, Liang YH, Shaw GX, Tropea JE,
Costantino N, Waugh DS, Ji X |
(2013) "RNase
III: Genetics and Function; Structure and
Mechanism." Annu. Rev. Genet.,
47, 405-431. doi: 10.1146/annurev-genet-110711-155618.
|
Crystal structure of rnase iii complexed with
double-stranded RNA and amp (type ii cleavage) .
SNAP output
|
4m4o
|
hydrolase-RNA |
X-ray (2.0 Å) |
Malashkevich VN, Padlan FC, Toro R, Girvin M, Almo
SC |
"Crystal structure of the aptamer minE-lysozyme
complex." |
Crystal structure of the aptamer mine-lysozyme complex
. SNAP output
|
4m59
|
RNA binding protein-RNA |
X-ray (2.46 Å) |
Yin P, Li Q, Yan C, Liu Y, Liu J, Yu F, Wang Z, Long
J, He J, Wang HW, Wang J, Zhu JK, Shi Y, Yan N |
(2013) "Structural
basis for the modular recognition of single-stranded
RNA by PPR proteins." Nature,
504, 168-171. doi: 10.1038/nature12651.
|
Crystal structure of the pentatricopeptide repeat
protein ppr10 in complex with an 18-nt psaj RNA element
. SNAP output
|
4m6d
|
hydrolase-RNA |
X-ray (2.68 Å) |
Malashkevich VN, Padlan FC, Toro R, Girvin M, Almo
SC |
"Crystal structure of the aptamer minF-lysozyme
complex." |
Crystal structure of the aptamer minf-lysozyme complex.
. SNAP output
|
4m7a
|
RNA binding protein |
X-ray (2.781 Å) |
Zhou L, Hang J, Zhou Y, Wan R, Lu G, Yin P, Yan C,
Shi Y |
(2014) "Crystal
structures of the Lsm complex bound to the 3' end
sequence of U6 small nuclear RNA." Nature,
506, 116-120. doi: 10.1038/nature12803.
|
Crystal structure of lsm2-8 complex bound to the 3' end
sequence of u6 snrna . SNAP output
|
4m7d
|
RNA binding protein |
X-ray (2.595 Å) |
Zhou L, Hang J, Zhou Y, Wan R, Lu G, Yin P, Yan C,
Shi Y |
(2014) "Crystal
structures of the Lsm complex bound to the 3' end
sequence of U6 small nuclear RNA." Nature,
506, 116-120. doi: 10.1038/nature12803.
|
Crystal structure of lsm2-8 complex bound to the RNA
fragment cguuu . SNAP
output
|
4mdx
|
hydrolase-RNA |
X-ray (1.5 Å) |
Simanshu DK, Yamaguchi Y, Park JH, Inouye M, Patel
DJ |
(2013) "Structural
Basis of mRNA Recognition and Cleavage by Toxin MazF
and Its Regulation by Antitoxin MazE in Bacillus
subtilis." Mol.Cell, 52,
447-458. doi: 10.1016/j.molcel.2013.09.006.
|
Crystal structure of bacillus subtilis mazf in complex
with RNA . SNAP
output
|
4n0t
|
RNA binding protein-RNA |
X-ray (1.7 Å) |
Montemayor EJ, Curran EC, Liao HH, Andrews KL, Treba
CN, Butcher SE, Brow DA |
(2014) "Core
structure of the U6 small nuclear ribonucleoprotein at
1.7- angstrom resolution."
Nat.Struct.Mol.Biol., 21,
544-551. doi: 10.1038/nsmb.2832.
|
Core structure of the u6 small nuclear
ribonucleoprotein at 1.7 angstrom resolution . SNAP output
|
4n2q
|
splicing-RNA |
X-ray (2.8 Å) |
Ke J, Chen RZ, Ban T, Zhou XE, Gu X, Tan MH, Chen C,
Kang Y, Brunzelle JS, Zhu JK, Melcher K, Xu HE |
(2013) "Structural
basis for RNA recognition by a dimeric PPR-protein
complex." Nat.Struct.Mol.Biol.,
20, 1377-1382. doi: 10.1038/nsmb.2710.
|
Crystal structure of tha8 in complex with zm4 RNA .
SNAP output
|
4n2s
|
splicing-RNA |
X-ray (3.0 Å) |
Ke J, Chen RZ, Ban T, Zhou XE, Gu X, Tan MH, Chen C,
Kang Y, Brunzelle JS, Zhu JK, Melcher K, Xu HE |
(2013) "Structural
basis for RNA recognition by a dimeric PPR-protein
complex." Nat.Struct.Mol.Biol.,
20, 1377-1382. doi: 10.1038/nsmb.2710.
|
Crystal structure of tha8 in complex with zm1a-6 RNA .
SNAP output
|
4n48
|
transferase-RNA |
X-ray (2.704 Å) |
Smietanski M, Werner M, Purta E, Kaminska KH,
Stepinski J, Darzynkiewicz E, Nowotny M, Bujnicki JM |
(2014) "Structural
analysis of human 2'-O-ribose methyltransferases
involved in mRNA cap structure formation." Nat
Commun, 5, 3004. doi: 10.1038/ncomms4004.
|
Cap-specific mrna (nucleoside-2'-o-)-methyltransferase
1 protein in complex with capped RNA fragment .
SNAP output
|
4ngb
|
hydrolase-RNA |
X-ray (2.25 Å) |
Tian Y, Simanshu DK, Ma JB, Park JE, Heo I, Kim VN,
Patel DJ |
(2014) "A
Phosphate-Binding Pocket within the
Platform-PAZ-Connector Helix Cassette of Human
Dicer." Mol.Cell, 53,
606-616. doi: 10.1016/j.molcel.2014.01.003.
|
Structure of human dicer platform-paz-connector helix
cassette in complex with 12-mer sirna having uu-3' ends
(2.25 angstrom resolution) . SNAP output
|
4ngc
|
hydrolase-RNA |
X-ray (2.104 Å) |
Tian Y, Simanshu DK, Ma JB, Park JE, Heo I, Kim VN,
Patel DJ |
(2014) "A
Phosphate-Binding Pocket within the
Platform-PAZ-Connector Helix Cassette of Human
Dicer." Mol.Cell, 53,
606-616. doi: 10.1016/j.molcel.2014.01.003.
|
Structure of human dicer platform-paz-connector helix
cassette in complex with 12-mer sirna having ua-3' ends
(2.1 angstrom resolution) . SNAP output
|
4ngd
|
hydrolase-RNA |
X-ray (1.958 Å) |
Tian Y, Simanshu DK, Ma JB, Park JE, Heo I, Kim VN,
Patel DJ |
(2014) "A
Phosphate-Binding Pocket within the
Platform-PAZ-Connector Helix Cassette of Human
Dicer." Mol.Cell, 53,
606-616. doi: 10.1016/j.molcel.2014.01.003.
|
Structure of human dicer platform-paz-connector helix
cassette in complex with 12-mer sirna having 5'-p and
uu-3' ends (1.95 angstrom resolution) . SNAP output
|
4ngf
|
hydrolase-RNA |
X-ray (3.101 Å) |
Tian Y, Simanshu DK, Ma JB, Park JE, Heo I, Kim VN,
Patel DJ |
(2014) "A
Phosphate-Binding Pocket within the
Platform-PAZ-Connector Helix Cassette of Human
Dicer." Mol.Cell, 53,
606-616. doi: 10.1016/j.molcel.2014.01.003.
|
Structure of human dicer platform-paz-connector helix
cassette in complex with 17-mer sirna having 5'-p and
uu-3' ends (3.1 angstrom resolution) . SNAP output
|
4ngg
|
hydrolase-RNA |
X-ray (2.6 Å) |
Tian Y, Simanshu DK, Ma JB, Park JE, Heo I, Kim VN,
Patel DJ |
(2014) "A
Phosphate-Binding Pocket within the
Platform-PAZ-Connector Helix Cassette of Human
Dicer." Mol.Cell, 53,
606-616. doi: 10.1016/j.molcel.2014.01.003.
|
Structure of human dicer platform-paz-connector helix
cassette in complex with 13-mer sirna having 5'-a and
uu-3' ends (2.6 angstrom resolution) . SNAP output
|
4nh3
|
hydrolase-RNA |
X-ray (2.616 Å) |
Tian Y, Simanshu DK, Ma JB, Park JE, Heo I, Kim VN,
Patel DJ |
(2014) "A
Phosphate-Binding Pocket within the
Platform-PAZ-Connector Helix Cassette of Human
Dicer." Mol.Cell, 53,
606-616. doi: 10.1016/j.molcel.2014.01.003.
|
Structure of human dicer platform-paz-connector helix
cassette in complex with 13-mer sirna having 5'-pu and
uu-3' ends (2.6 angstrom resolution) . SNAP output
|
4nh5
|
hydrolase-RNA |
X-ray (2.55 Å) |
Tian Y, Simanshu DK, Ma JB, Park JE, Heo I, Kim VN,
Patel DJ |
(2014) "A
Phosphate-Binding Pocket within the
Platform-PAZ-Connector Helix Cassette of Human
Dicer." Mol.Cell, 53,
606-616. doi: 10.1016/j.molcel.2014.01.003.
|
Structure of human dicer platform-paz-connector helix
cassette in complex with 14-mer sirna having 5'-puu and
uu-3' ends (2.55 angstrom resolution) . SNAP output
|
4nh6
|
hydrolase-RNA |
X-ray (2.551 Å) |
Tian Y, Simanshu DK, Ma JB, Park JE, Heo I, Kim VN,
Patel DJ |
(2014) "A
Phosphate-Binding Pocket within the
Platform-PAZ-Connector Helix Cassette of Human
Dicer." Mol.Cell, 53,
606-616. doi: 10.1016/j.molcel.2014.01.003.
|
Structure of human dicer platform-paz-connector helix
cassette in complex with 15-mer sirna having 5'-puuu
and uu-3' ends (2.55 angstrom resolution) . SNAP output
|
4nha
|
hydrolase-RNA |
X-ray (3.401 Å) |
Tian Y, Simanshu DK, Ma JB, Park JE, Heo I, Kim VN,
Patel DJ |
(2014) "A
Phosphate-Binding Pocket within the
Platform-PAZ-Connector Helix Cassette of Human
Dicer." Mol.Cell, 53,
606-616. doi: 10.1016/j.molcel.2014.01.003.
|
Structure of human dicer platform-paz-connector helix
cassette in complex with 16-mer sirna having 5'-p and
uu-3' ends (3.4 angstrom resolution) . SNAP output
|
4nku
|
transferase-RNA |
X-ray (1.94 Å) |
Munoz-Tello P, Gabus C, Thore S |
(2014) "A
critical switch in the enzymatic properties of the Cid1
protein deciphered from its product-bound crystal
structure." Nucleic Acids Res.,
42, 3372-3380. doi: 10.1093/nar/gkt1278.
|
Structure of cid1 in complex with its short product apu
. SNAP output
|
4nl3
|
RNA binding protein-RNA |
X-ray (3.1 Å) |
Kovach AR, Hoff KE, Canty JT, Orans J, Brennan
RG |
(2014) "Recognition
of U-rich RNA by Hfq from the Gram-positive pathogen
Listeria monocytogenes." Rna,
20, 1548-1559. doi: 10.1261/rna.044032.113.
|
Crystal structure of listeria monocytogenes hfq in
complex with u6 RNA . SNAP output
|
4nxm
|
ribosome |
X-ray (3.65 Å) |
Demirci H, Murphy IV F, Murphy E, Gregory ST,
Dahlberg AE, Jogl G |
"A structural basis for streptomycin
resistance." |
Crystal structure of the 30s ribosomal subunit from a
gidb (rsmg) mutant of thermus thermophilus (hb8) .
SNAP output
|
4nxn
|
ribosome-antibiotic |
X-ray (3.544 Å) |
Demirci H, Murphy IV F, Murphy E, Gregory ST,
Dahlberg AE, Jogl G |
"A structural basis for streptomycin
resistance." |
Crystal structure of the 30s ribosomal subunit from a
gidb (rsmg) mutant of thermus thermophilus (hb8), bound
with streptomycin . SNAP
output
|
4o26
|
RNA binding protein-RNA |
X-ray (3.001 Å) |
Huang J, Brown AF, Wu J, Xue J, Bley CJ, Rand DP, Wu
L, Zhang R, Chen JJ, Lei M |
(2014) "Structural
basis for protein-RNA recognition in telomerase."
Nat.Struct.Mol.Biol., 21,
507-512. doi: 10.1038/nsmb.2819.
|
Crystal structure of the trbd domain of tert and the
cr4-5 of tr . SNAP
output
|
4o8j
|
ligase-RNA |
X-ray (2.04 Å) |
Desai KK, Bingman CA, Cheng CL, Phillips Jr GN,
Raines RT |
(2014) "Structure
of RNA 3'-phosphate cyclase bound to substrate
RNA." Rna, 20, 1560-1566.
doi: 10.1261/rna.045823.114.
|
Crystal structure of rtca, the RNA 3'-terminal
phosphate cyclase from pyrococcus horikoshii, in
complex with racaaa3'phosphate and adenine. . SNAP output
|
4oau
|
hydrolase-RNA |
X-ray (2.6 Å) |
Han Y, Donovan J, Rath S, Whitney G, Chitrakar A,
Korennykh A |
(2014) "Structure
of human RNase L reveals the basis for regulated RNA
decay in the IFN response." Science,
343, 1244-1248. doi: 10.1126/science.1249845.
|
Complete human rnase l in complex with biological
activators. . SNAP
output
|
4oav
|
hydrolase-RNA |
X-ray (2.1 Å) |
Han Y, Donovan J, Rath S, Whitney G, Chitrakar A,
Korennykh A |
(2014) "Structure
of human RNase L reveals the basis for regulated RNA
decay in the IFN response." Science,
343, 1244-1248. doi: 10.1126/science.1249845.
|
Complete human rnase l in complex with 2-5a (5'-ppp
heptamer), amppcp and RNA substrate. . SNAP output
|
4oe1
|
RNA binding protein-RNA |
X-ray (2.8 Å) |
Li Q, Yan C, Xu H, Wang Z, Long J, Li W, Wu J, Yin P,
Yan N |
(2014) "Examination
of the dimerization states of the single-stranded RNA
recognition protein pentatricopeptide repeat 10
(PPR10)." J.Biol.Chem.,
289, 31503-31512. doi: 10.1074/jbc.M114.575472.
|
Crystal structure of the pentatricopeptide repeat
protein ppr10 (c256s-c430s-c449s) in complex with an
18-nt psaj RNA element . SNAP output
|
4ohy
|
RNA binding protein-RNA |
X-ray (2.0 Å) |
Dikfidan A, Loll B, Zeymer C, Magler I, Clausen T,
Meinhart A |
(2014) "RNA
specificity and regulation of catalysis in the
eukaryotic polynucleotide kinase clp1."
Mol.Cell, 54, 975-986. doi:
10.1016/j.molcel.2014.04.005.
|
C. elegans clp1 bound to ssrna dinucleotide gc,
amp-pnp, and mg2+(inhibited substrate bound state) .
SNAP output
|
4ohz
|
RNA binding protein-RNA |
X-ray (2.4 Å) |
Dikfidan A, Loll B, Zeymer C, Magler I, Clausen T,
Meinhart A |
(2014) "RNA
specificity and regulation of catalysis in the
eukaryotic polynucleotide kinase clp1."
Mol.Cell, 54, 975-986. doi:
10.1016/j.molcel.2014.04.005.
|
Bound to ssrna tetranucleotide gaaa, adp, and mg2+ .
SNAP output
|
4oi0
|
RNA binding protein-RNA |
X-ray (2.2 Å) |
Dikfidan A, Loll B, Zeymer C, Magler I, Clausen T,
Meinhart A |
(2014) "RNA
specificity and regulation of catalysis in the
eukaryotic polynucleotide kinase clp1."
Mol.Cell, 54, 975-986. doi:
10.1016/j.molcel.2014.04.005.
|
Bound to ssrna dinucleotide gc, adp, alf4-, and
mg2+(transition state, data set i) . SNAP output
|
4oi1
|
RNA binding protein-RNA |
X-ray (2.3 Å) |
Dikfidan A, Loll B, Zeymer C, Magler I, Clausen T,
Meinhart A |
(2014) "RNA
specificity and regulation of catalysis in the
eukaryotic polynucleotide kinase clp1."
Mol.Cell, 54, 975-986. doi:
10.1016/j.molcel.2014.04.005.
|
Clp1 bound to ssrna dinucleotide gc, adp, alf4-, and
mg2+(transition state, data set ii) . SNAP output
|
4ola
|
hydrolase-RNA |
X-ray (2.3 Å) |
Schirle NT, MacRae IJ |
(2012) "The
crystal structure of human Argonaute2."
Science, 336, 1037-1040. doi:
10.1126/science.1221551.
|
Crystal structure of human argonaute2 . SNAP output
|
4olb
|
hydrolase-RNA |
X-ray (2.899 Å) |
Schirle NT, MacRae IJ |
(2012) "The
crystal structure of human Argonaute2."
Science, 336, 1037-1040. doi:
10.1126/science.1221551.
|
Crystal structure of human argonaute2 bound to
tryptophan . SNAP
output
|
4oo1
|
hydrolase-RNA |
X-ray (3.3 Å) |
Wasmuth EV, Januszyk K, Lima CD |
(2014) "Structure
of an Rrp6-RNA exosome complex bound to poly(A)
RNA." Nature, 511,
435-439. doi: 10.1038/nature13406.
|
Structure of an rrp6-RNA exosome complex bound to
poly(a) RNA . SNAP
output
|
4oog
|
hydrolase-RNA |
X-ray (2.5 Å) |
Liang YH, Lavoie M, Comeau MA, Abou Elela S, Ji
X |
(2014) "Structure
of a Eukaryotic RNase III Postcleavage Complex Reveals
a Double-Ruler Mechanism for Substrate Selection."
Mol.Cell, 54, 431-444. doi:
10.1016/j.molcel.2014.03.006.
|
Crystal structure of yeast rnase iii (rnt1p) complexed
with the product of dsrna processing . SNAP output
|
4oq8
|
virus-RNA |
X-ray (1.45 Å) |
Larson SB, Day JS, McPherson A |
(2014) "Satellite
tobacco mosaic virus refined to 1.4 angstrom
resolution." Acta Crystallogr.,Sect.D,
70, 2316-2330. doi: 10.1107/S1399004714013789.
|
Satellite tobacco mosaic virus refined to 1.4 Å
resolution using icosahedral constraints . SNAP output
|
4ox9
|
ribosome-antibiotic |
X-ray (3.8 Å) |
Dunkle JA, Vinal K, Desai PM, Zelinskaya N, Savic M,
West DM, Conn GL, Dunham CM |
(2014) "Molecular
recognition and modification of the 30S ribosome by the
aminoglycoside-resistance methyltransferase NpmA."
Proc.Natl.Acad.Sci.USA, 111,
6275-6280. doi: 10.1073/pnas.1402789111.
|
Crystal structure of the aminoglycoside resistance
methyltransferase npma bound to the 30s ribosomal
subunit . SNAP
output
|
4p3e
|
RNA binding protein-RNA |
X-ray (3.5 Å) |
Grotwinkel JT, Wild K, Segnitz B, Sinning I |
(2014) "SRP RNA
remodeling by SRP68 explains its role in protein
translocation." Science,
344, 101-104. doi: 10.1126/science.1249094.
|
Structure of the human srp s domain . SNAP output
|
4p6f
|
ribosome-ribosome inhibitor |
X-ray (3.6 Å) |
Washington AZ, Benicewicz DB, Canzoneri JC, Fagan CE,
Mwakwari SC, Maehigashi T, Dunham CM, Oyelere AK |
(2014) "Macrolide-Peptide
Conjugates as Probes of the Path of Travel of the
Nascent Peptides through the Ribosome." Acs
Chem.Biol., 9, 2621-2631. doi:
10.1021/cb5003224.
|
Crystal structure of the peptolide 12c bound to
bacterial ribosome . SNAP output
|
4p70
|
ribosome |
X-ray (3.68 Å) |
Maehigashi T, Dunkle JA, Miles SJ, Dunham CM |
(2014) "Structural
insights into +1 frameshifting promoted by expanded or
modification-deficient anticodon stem loops."
Proc.Natl.Acad.Sci.USA, 111,
12740-12745. doi: 10.1073/pnas.1409436111.
|
Crystal structure of unmodified trna proline (cgg)
bound to codon ccg on the ribosome . SNAP output
|
4pdb
|
ribosomal protein-RNA |
X-ray (2.6 Å) |
Davlieva M, Donarski J, Wang J, Shamoo Y, Nikonowicz
EP |
(2014) "Structure
analysis of free and bound states of an RNA aptamer
against ribosomal protein S8 from Bacillus
anthracis." Nucleic Acids Res.,
42, 10795-10808. doi: 10.1093/nar/gku743.
|
Crystal structure of bacillus anthracis ribosomal
protein s8 in complex with an RNA aptamer . SNAP output
|
4pjo
|
splicing |
X-ray (3.3 Å) |
Kondo Y, Oubridge C, van Roon AM, Nagai K |
(2015) "Crystal
structure of human U1 snRNP, a small nuclear
ribonucleoprotein particle, reveals the mechanism of 5'
splice site recognition." Elife,
4. doi: 10.7554/eLife.04986.
|
Minimal u1 snrnp . SNAP
output
|
4pkd
|
gene regulation |
X-ray (2.5 Å) |
Kondo Y, Oubridge C, van Roon AM, Nagai K |
(2015) "Crystal
structure of human U1 snRNP, a small nuclear
ribonucleoprotein particle, reveals the mechanism of 5'
splice site recognition." Elife,
4. doi: 10.7554/eLife.04986.
|
U1-70k in complex with u1 snrna stem-loops 1 and u1-a
rrm in complex with stem-loop 2 . SNAP output
|
4pmi
|
RNA binding protein-RNA |
X-ray (3.2 Å) |
Jayaraman B, Crosby DC, Homer C, Ribeiro I, Mavor D,
Frankel AD |
(2014) "RNA-directed
remodeling of the HIV-1 protein Rev orchestrates
assembly of the Rev-Rev response element complex."
Elife, 4, e04120. doi:
10.7554/eLife.04120.
|
Crystal structure of rev and rev-response-element RNA
complex . SNAP
output
|
4pmw
|
hydrolase-RNA |
X-ray (2.95 Å) |
Faehnle CR, Walleshauser J, Joshua-Tor L |
(2014) "Mechanism
of Dis3l2 substrate recognition in the Lin28-let-7
pathway." Nature, 514,
252-256. doi: 10.1038/nature13553.
|
Structure of mouse dis3l2 in complex with oligou RNA
substrate . SNAP
output
|
4pr6
|
RNA binding protein-RNA |
X-ray (2.3 Å) |
Kapral GJ, Jain S, Noeske J, Doudna JA, Richardson
DC, Richardson JS |
(2014) "New
tools provide a second look at HDV ribozyme structure,
dynamics and cleavage." Nucleic Acids
Res., 42, 12833-12846. doi:
10.1093/nar/gku992.
|
A second look at the hdv ribozyme structure and
dynamics. . SNAP
output
|
4prf
|
RNA binding protein-RNA |
X-ray (2.395 Å) |
Kapral GJ, Jain S, Noeske J, Doudna JA, Richardson
DC, Richardson JS |
(2014) "New
tools provide a second look at HDV ribozyme structure,
dynamics and cleavage." Nucleic Acids
Res., 42, 12833-12846. doi:
10.1093/nar/gku992.
|
A second look at the hdv ribozyme structure and
dynamics. . SNAP
output
|
4q9q
|
RNA |
X-ray (2.45 Å) |
Huang H, Suslov NB, Li NS, Shelke SA, Evans ME,
Koldobskaya Y, Rice PA, Piccirilli JA |
(2014) "A
G-quadruplex-containing RNA activates fluorescence in a
GFP-like fluorophore." Nat.Chem.Biol.,
10, 686-691. doi: 10.1038/nchembio.1561.
|
Crystal structure of an RNA aptamer bound to
bromo-ligand analog in complex with fab . SNAP output
|
4q9r
|
RNA-immune system |
X-ray (3.12 Å) |
Huang H, Suslov NB, Li NS, Shelke SA, Evans ME,
Koldobskaya Y, Rice PA, Piccirilli JA |
(2014) "A
G-quadruplex-containing RNA activates fluorescence in a
GFP-like fluorophore." Nat.Chem.Biol.,
10, 686-691. doi: 10.1038/nchembio.1561.
|
Crystal structure of an RNA aptamer bound to
trifluoroethyl-ligand analog in complex with fab .
SNAP output
|
4qei
|
ligase-RNA |
X-ray (2.875 Å) |
Deng X, Qin X, Chen L, Jia Q, Zhang Y, Zhang Z, Lei
D, Ren G, Zhou Z, Wang Z, Li Q, Xie W |
(2016) "Large
Conformational Changes of Insertion 3 in Human
Glycyl-tRNA Synthetase (hGlyRS) during Catalysis."
J.Biol.Chem., 291, 5740-5752.
doi: 10.1074/jbc.M115.679126.
|
Two distinct conformational states of glyrs captured in
crystal lattice . SNAP
output
|
4qg3
|
ribosomal protein-RNA |
X-ray (2.0 Å) |
Tishchenko S, Kostareva O, Gabdulkhakov A, Mikhaylina
A, Nikonova E, Nevskaya N, Sarskikh A, Piendl W, Garber
M, Nikonov S |
(2015) "Protein-RNA
affinity of ribosomal protein L1 mutants does not
correlate with the number of intermolecular
interactions." Acta Crystallogr.,Sect.D,
71, 376-386. doi: 10.1107/S1399004714026248.
|
Crystal structure of mutant ribosomal protein g219v
tthl1 in complex with 80nt 23s RNA from thermus
thermophilus . SNAP
output
|
4qi2
|
RNA binding protein-RNA |
X-ray (3.0 Å) |
Schlundt A, Heinz GA, Janowski R, Geerlof A, Stehle
R, Heissmeyer V, Niessing D, Sattler M |
(2014) "Structural
basis for RNA recognition in roquin-mediated
post-transcriptional gene regulation."
Nat.Struct.Mol.Biol., 21,
671-678. doi: 10.1038/nsmb.2855.
|
X-ray structure of the roq domain from murine roquin-1
in complex with a 23-mer tnf-cde RNA . SNAP output
|
4qik
|
RNA binding protein-RNA |
X-ray (1.9 Å) |
Tan D, Zhou M, Kiledjian M, Tong L |
(2014) "The ROQ
domain of Roquin recognizes mRNA constitutive-decay
element and double-stranded RNA."
Nat.Struct.Mol.Biol., 21,
679-685. doi: 10.1038/nsmb.2857.
|
Crystal structure of the roq domain of human roquin in
complex with the tnf23 RNA duplex . SNAP output
|
4qil
|
RNA binding protein-RNA |
X-ray (2.9 Å) |
Tan D, Zhou M, Kiledjian M, Tong L |
(2014) "The ROQ
domain of Roquin recognizes mRNA constitutive-decay
element and double-stranded RNA."
Nat.Struct.Mol.Biol., 21,
679-685. doi: 10.1038/nsmb.2857.
|
Crystal structure of the roq domain of human roquin in
complex with the hmg19 stem-loop RNA . SNAP output
|
4qm6
|
transferase-RNA |
X-ray (1.5 Å) |
Das U, Wang LK, Smith P, Munir A, Shuman S |
(2014) "Structures
of bacterial polynucleotide kinase in a michaelis
complex with nucleoside triphosphate (NTP)-Mg2+ and
5'-OH RNA and a mixed substrate-product complex with
NTP-Mg2+ and a 5'-phosphorylated oligonucleotide."
J.Bacteriol., 196, 4285-4292.
doi: 10.1128/JB.02197-14.
|
Structure of bacterial polynucleotide kinase bound to
gtp and RNA . SNAP
output
|
4qoz
|
RNA-hydrolase-RNA binding protein |
X-ray (2.304 Å) |
Zhang J, Tan D, DeRose EF, Perera L, Dominski Z,
Marzluff WF, Tong L, Hall TM |
(2014) "Molecular
mechanisms for the regulation of histone mRNA
stem-loop-binding protein by phosphorylation."
Proc.Natl.Acad.Sci.USA, 111,
E2937-E2946. doi: 10.1073/pnas.1406381111.
|
Crystal structure of the histone mrna stem-loop,
stem-loop binding protein (phosphorylated), and 3'hexo
ternary complex . SNAP
output
|
4qpx
|
hydrolase-RNA |
X-ray (1.86 Å) |
Zamyatkin D, Rao C, Hoffarth E, Jurca G, Rho H, Parra
F, Grochulski P, Ng KK |
(2014) "Structure
of a backtracked state reveals conformational changes
similar to the state following nucleotide incorporation
in human norovirus polymerase." Acta
Crystallogr.,Sect.D, 70,
3099-3109. doi: 10.1107/S1399004714021518.
|
Nv polymerase post-incorporation-like complex .
SNAP output
|
4qqb
|
tranlation-RNA |
X-ray (2.8 Å) |
Hennig J, Militti C, Popowicz GM, Wang I, Sonntag M,
Geerlof A, Gabel F, Gebauer F, Sattler M |
(2014) "Structural
basis for the assembly of the Sxl-Unr translation
regulatory complex." Nature,
515, 287-290. doi: 10.1038/nature13693.
|
Structural basis for the assembly of the sxl-unr
translation regulatory complex . SNAP output
|
4qu6
|
RNA binding protein-RNA |
X-ray (1.75 Å) |
Joint Center for Structural Genomics (JCSG),
Partnership for T-Cell Biology (TCELL) |
"Crystal structure of a G-rich RNA sequence binding
factor 1 (GRSF1) from Homo sapiens at 1.75 A
resolution." |
Crystal structure of a g-rich RNA sequence binding
factor 1 (grsf1) from homo sapiens at 1.75 Å resolution
. SNAP output
|
4qu7
|
RNA binding protein-RNA |
X-ray (2.5 Å) |
Joint Center for Structural Genomics (JCSG),
Partnership for T-Cell Biology (TCELL) |
"Crystal structure of a G-rich RNA sequence binding
factor 1 (GRSF1) from Homo sapiens at 2.50 A
resolution." |
Crystal structure of a g-rich RNA sequence binding
factor 1 (grsf1) from homo sapiens at 2.50 Å resolution
. SNAP output
|
4qvc
|
RNA binding protein-RNA |
X-ray (1.99 Å) |
Wang LJ, Wang WW, Li FD, Zhang J, Wu JH, Gong QG, Shi
YY |
(2015) "Structural
insights into the recognition of the internal A-rich
linker from OxyS sRNA by Escherichia coli Hfq."
Nucleic Acids Res., 43,
2400-2411. doi: 10.1093/nar/gkv072.
|
E.coli hfq in complex with RNA aus . SNAP output
|
4qvd
|
RNA binding protein-RNA |
X-ray (1.972 Å) |
Wang LJ, Wang WW, Li FD, Zhang J, Wu JH, Gong QG, Shi
YY |
(2015) "Structural
insights into the recognition of the internal A-rich
linker from OxyS sRNA by Escherichia coli Hfq."
Nucleic Acids Res., 43,
2400-2411. doi: 10.1093/nar/gkv072.
|
E.coli hfq in complex with RNA ads . SNAP output
|
4qvi
|
ribosomal protein-RNA |
X-ray (1.9 Å) |
Tishchenko S, Kostareva O, Gabdulkhakov A, Mikhaylina
A, Nikonova E, Nevskaya N, Sarskikh A, Piendl W, Garber
M, Nikonov S |
(2015) "Protein-RNA
affinity of ribosomal protein L1 mutants does not
correlate with the number of intermolecular
interactions." Acta Crystallogr.,Sect.D,
71, 376-386. doi: 10.1107/S1399004714026248.
|
Crystal structure of mutant ribosomal protein m218l
tthl1 in complex with 80nt 23s RNA from thermus
thermophilus . SNAP
output
|
4r3i
|
RNA binding protein-RNA |
X-ray (1.8 Å) |
Xu C, Wang X, Liu K, Roundtree IA, Tempel W, Li Y, Lu
Z, He C, Min J |
(2014) "Structural
basis for selective binding of m(6)A RNA by the YTHDC1
YTH domain." Nat.Chem.Biol.,
10, 927-929. doi: 10.1038/nchembio.1654.
|
The crystal structure of an RNA complex . SNAP output
|
4r8i
|
cytokine-RNA |
X-ray (2.05 Å) |
Oberthur D, Achenbach J, Gabdulkhakov A, Buchner K,
Maasch C, Falke S, Rehders D, Klussmann S, Betzel C |
(2015) "Crystal
structure of a mirror-image L-RNA aptamer (Spiegelmer)
in complex with the natural L-protein target CCL2."
Nat Commun, 6, 6923. doi:
10.1038/ncomms7923.
|
High resolution structure of a mirror-image RNA
oligonucleotide aptamer in complex with the chemokine
ccl2 . SNAP output
|
4rcj
|
RNA binding protein-RNA |
X-ray (1.6 Å) |
Xu C, Liu K, Ahmed H, Loppnau P, Schapira M, Min
J |
(2015) "Structural
Basis for the Discriminative Recognition of
N6-Methyladenosine RNA by the Human YT521-B Homology
Domain Family of Proteins." J.Biol.Chem.,
290, 24902-24913. doi: 10.1074/jbc.M115.680389.
|
Crystal structure of ythdf1 yth domain in complex with
5mer m6a RNA . SNAP
output
|
4rcm
|
RNA binding protein-RNA |
X-ray (1.8 Å) |
Xu C, Liu K, Ahmed H, Loppnau P, Schapira M, Min
J |
(2015) "Structural
Basis for the Discriminative Recognition of
N6-Methyladenosine RNA by the Human YT521-B Homology
Domain Family of Proteins." J.Biol.Chem.,
290, 24902-24913. doi: 10.1074/jbc.M115.680389.
|
Crystal structure of the pho92 yth domain in complex
with m6a . SNAP
output
|
4rdx
|
ligase-RNA |
X-ray (2.55 Å) |
Tian Q, Wang C, Liu Y, Xie W |
(2015) "Structural
basis for recognition of G-1-containing tRNA by
histidyl-tRNA synthetase." Nucleic Acids
Res., 43, 2980-2990. doi:
10.1093/nar/gkv129.
|
Structure of histidinyl-trna synthetase in complex with
trna(his) . SNAP
output
|
4rmo
|
toxin-RNA |
X-ray (2.2 Å) |
Rao F, Short FL, Voss JE, Blower TR, Orme AL,
Whittaker TE, Luisi BF, Salmond GP |
(2015) "Co-evolution
of quaternary organization and novel RNA tertiary
interactions revealed in the crystal structure of a
bacterial protein-RNA toxin-antitoxin system."
Nucleic Acids Res., 43,
9529-9540. doi: 10.1093/nar/gkv868.
|
Crystal structure of the cptin type iii toxin-antitoxin
system from eubacterium rectale . SNAP output
|
4rqe
|
ligase-RNA |
X-ray (4.0 Å) |
Wang C, Guo Y, Tian Q, Jia Q, Gao Y, Zhang Q, Zhou C,
Xie W |
(2015) "SerRS-tRNASec
complex structures reveal mechanism of the first step
in selenocysteine biosynthesis." Nucleic Acids
Res., 43, 10534-10545. doi:
10.1093/nar/gkv996.
|
Human seryl-trna synthetase dimer complexed with two
molecules of trnasec . SNAP output
|
4rqf
|
ligase-RNA |
X-ray (3.503 Å) |
Wang C, Guo Y, Tian Q, Jia Q, Gao Y, Zhang Q, Zhou C,
Xie W |
(2015) "SerRS-tRNASec
complex structures reveal mechanism of the first step
in selenocysteine biosynthesis." Nucleic Acids
Res., 43, 10534-10545. doi:
10.1093/nar/gkv996.
|
Human seryl-trna synthetase dimer complexed with one
molecule of trnasec . SNAP output
|
4rwn
|
transferase-RNA |
X-ray (2.0 Å) |
Lohofener J, Steinke N, Kay-Fedorov P, Baruch P,
Nikulin A, Tishchenko S, Manstein DJ, Fedorov R |
(2015) "The
Activation Mechanism of 2'-5'-Oligoadenylate Synthetase
Gives New Insights Into OAS/cGAS Triggers of Innate
Immunity." Structure, 23,
851-862. doi: 10.1016/j.str.2015.03.012.
|
Crystal structure of the pre-reactive state of porcine
oas1 . SNAP output
|
4rwo
|
transferase-RNA |
X-ray (2.2 Å) |
Lohofener J, Steinke N, Kay-Fedorov P, Baruch P,
Nikulin A, Tishchenko S, Manstein DJ, Fedorov R |
(2015) "The
Activation Mechanism of 2'-5'-Oligoadenylate Synthetase
Gives New Insights Into OAS/cGAS Triggers of Innate
Immunity." Structure, 23,
851-862. doi: 10.1016/j.str.2015.03.012.
|
Crystal structure of the porcine oas1 l149r mutant in
complex with dsrna and apcpp in the amp donor position
. SNAP output
|
4rwp
|
transferase-RNA |
X-ray (2.25 Å) |
Lohofener J, Steinke N, Kay-Fedorov P, Baruch P,
Nikulin A, Tishchenko S, Manstein DJ, Fedorov R |
(2015) "The
Activation Mechanism of 2'-5'-Oligoadenylate Synthetase
Gives New Insights Into OAS/cGAS Triggers of Innate
Immunity." Structure, 23,
851-862. doi: 10.1016/j.str.2015.03.012.
|
Crystal structure of porcine oas1 in complex with dsrna
. SNAP output
|
4s2x
|
hydrolase-RNA |
X-ray (1.5 Å) |
Vasilyev N, Serganov A |
(2015) "Structures
of RNA Complexes with the Escherichia coli RNA
Pyrophosphohydrolase RppH Unveil the Basis for Specific
5'-End-dependent mRNA Decay."
J.Biol.Chem., 290, 9487-9499.
doi: 10.1074/jbc.M114.634824.
|
Structure of e. coli rpph bound to RNA and two
magnesium ions . SNAP
output
|
4s2y
|
hydrolase-RNA |
X-ray (1.6 Å) |
Vasilyev N, Serganov A |
(2015) "Structures
of RNA Complexes with the Escherichia coli RNA
Pyrophosphohydrolase RppH Unveil the Basis for Specific
5'-End-dependent mRNA Decay."
J.Biol.Chem., 290, 9487-9499.
doi: 10.1074/jbc.M114.634824.
|
Structure of e. coli rpph bound to RNA and three
magnesium ions . SNAP
output
|
4s3n
|
transferase-RNA |
X-ray (2.0 Å) |
Donovan J, Whitney G, Rath S, Korennykh A |
(2015) "Structural
mechanism of sensing long dsRNA via a noncatalytic
domain in human oligoadenylate synthetase 3."
Proc.Natl.Acad.Sci.USA, 112,
3949-3954. doi: 10.1073/pnas.1419409112.
|
Crystal structure of human oas3 domain i in complex
with dsrna . SNAP
output
|
4tu0
|
viral protein |
X-ray (2.3 Å) |
Morin B, Ferron FP, Malet H, Coutard B, Canard B |
"CRYSTAL STRUCTURE OF CHIKUNGUNYA VIRUS NSP3 MACRO
DOMAIN IN COMPLEX WITH A 2'-5' OLIGOADENYLATE
TRIMER." |
Crystal structure of chikungunya virus nsp3 macro
domain in complex with a 2'-5' oligoadenylate trimer .
SNAP output
|
4tua
|
ribosome |
X-ray (3.6 Å) |
Fagan CE, Maehigashi T, Dunkle JA, Miles SJ, Dunham
CM |
(2014) "Structural
insights into translational recoding by frameshift
suppressor tRNASufJ." Rna,
20, 1944-1954. doi: 10.1261/rna.046953.114.
|
Crystal structure of asl-thr bound to codon acc-a on
the ribosome . SNAP
output
|
4tub
|
ribosome |
X-ray (3.6 Å) |
Fagan CE, Maehigashi T, Dunkle JA, Miles SJ, Dunham
CM |
(2014) "Structural
insights into translational recoding by frameshift
suppressor tRNASufJ." Rna,
20, 1944-1954. doi: 10.1261/rna.046953.114.
|
Crystal structure of trna-thr bound to codon acc-c on
the ribosome . SNAP
output
|
4tuc
|
ribosome |
X-ray (3.6 Å) |
Fagan CE, Maehigashi T, Dunkle JA, Miles SJ, Dunham
CM |
(2014) "Structural
insights into translational recoding by frameshift
suppressor tRNASufJ." Rna,
20, 1944-1954. doi: 10.1261/rna.046953.114.
|
Crystal structure of asl-sufj bound to codon acc-a on
the ribosome . SNAP
output
|
4tud
|
ribosome |
X-ray (3.6 Å) |
Fagan CE, Maehigashi T, Dunkle JA, Miles SJ, Dunham
CM |
(2014) "Structural
insights into translational recoding by frameshift
suppressor tRNASufJ." Rna,
20, 1944-1954. doi: 10.1261/rna.046953.114.
|
Crystal structure of asl-sufj bound to codon acc-c on
the ribosome . SNAP
output
|
4tue
|
ribosome |
X-ray (3.5 Å) |