Summary information and primary citation
- PDB-id
- 4gjp; SNAP-derived features in text and JSON formats;
DNAproDB
- Class
- transcription-DNA
- Method
- X-ray (1.94 Å)
- Summary
- Crystal structure of the tal effector dhax3 bound to dsDNA containing repetitive methyl-cpg
- Reference
- Yan N, Deng D, Yan CY, Yin P, Pan XJ, Shi YG: "Crystal structure of a protein complex."
- Abstract
-
- The contacts include paired nucleotides (mostly a G in Watson-Crick G-C pairing), and
amino-acids within a 4.5-A distance cutoff to base atoms of 5mC.
- The structure is oriented in the base reference frame of 5mC, allowing for easy comparison
and direct superimposition between entries.
- The black sphere (•) denotes the 5-methyl carbon atom in 5mC.
No. 1 I.5CM6: stacking-with-A.ASN505 is-WC-paired is-in-duplex [+]:TcG/CGA |
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No. 2 I.5CM8: stacking-with-A.ASN573 is-WC-paired is-in-duplex [+]:GcG/CGC |
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No. 3 G.5CM6: stacking-with-B.ASN505 is-WC-paired is-in-duplex [+]:TcG/CGA |
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No. 4 G.5CM8: stacking-with-B.ASN573 is-WC-paired is-in-duplex [+]:GcG/CGC |
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