pdb id class method authors reference annotation
1a1t viral protein-RNA NMR De Guzman RN, Wu ZR, Stalling CC, Pappalardo L, Borer PN, Summers MF (1998) "Structure of the HIV-1 nucleocapsid protein bound to the SL3 psi-RNA recognition element." Science, 279, 384-388. doi: 10.1126/science.279.5349.384. Structure of the hiv-1 nucleocapsid protein bound to the sl3 psi-RNA recognition element, NMR, 25 structures. SNAP output
1a34 virus-RNA X-ray (1.81 Å) Larson SB, Day J, Greenwood A, McPherson A (1998) "Refined structure of satellite tobacco mosaic virus at 1.8 A resolution." J.Mol.Biol., 277, 37-59. doi: 10.1006/jmbi.1997.1570. Satellite tobacco mosaic virus-RNA complex. SNAP output
1a4t transcription-RNA NMR Cai Z, Gorin A, Frederick R, Ye X, Hu W, Majumdar A, Kettani A, Patel DJ (1998) "Solution structure of P22 transcriptional antitermination N peptide-boxB RNA complex." Nat.Struct.Biol., 5, 203-212. doi: 10.1038/nsb0398-203. Solution structure of phage p22 n peptide-box b RNA complex, NMR, 20 structures. SNAP output
1a9n RNA binding protein-RNA X-ray (2.38 Å) Price SR, Evans PR, Nagai K (1998) "Crystal structure of the spliceosomal U2B"-U2A' protein complex bound to a fragment of U2 small nuclear RNA." Nature, 394, 645-650. doi: 10.1038/29234. Crystal structure of the spliceosomal u2b''-u2a' protein complex bound to a fragment of u2 small nuclear RNA. SNAP output
1aq3 virus-RNA X-ray (2.8 Å) van den Worm SH, Stonehouse NJ, Valegard K, Murray JB, Walton C, Fridborg K, Stockley PG, Liljas L (1998) "Crystal structures of MS2 coat protein mutants in complex with wild-type RNA operator fragments." Nucleic Acids Res., 26, 1345-1351. doi: 10.1093/nar/26.5.1345. Bacteriophage ms2 capsid protein-RNA complex. SNAP output
1aq4 virus-RNA X-ray (3.0 Å) van den Worm SH, Stonehouse NJ, Valegard K, Murray JB, Walton C, Fridborg K, Stockley PG, Liljas L (1998) "Crystal structures of MS2 coat protein mutants in complex with wild-type RNA operator fragments." Nucleic Acids Res., 26, 1345-1351. doi: 10.1093/nar/26.5.1345. Structure of a ms2 coat protein mutant in complex with an RNA operator. SNAP output
1asy complex (aminoacyl-trna synthase-trna) X-ray (2.9 Å) Ruff M, Krishnaswamy S, Boeglin M, Poterszman A, Mitschler A, Podjarny A, Rees B, Thierry JC, Moras D (1991) "Class II aminoacyl transfer RNA synthetases: crystal structure of yeast aspartyl-tRNA synthetase complexed with tRNA(Asp)." Science, 252, 1682-1689. Class ii aminoacyl transfer RNA synthetases: crystal structure of yeast aspartyl-trna synthetase complexed with trna asp. SNAP output
1asz complex (aminoacyl-trna synthase-trna) X-ray (3.0 Å) Cavarelli J, Eriani G, Rees B, Ruff M, Boeglin M, Mitschler A, Martin F, Gangloff J, Thierry JC, Moras D (1994) "The active site of yeast aspartyl-tRNA synthetase: structural and functional aspects of the aminoacylation reaction." EMBO J., 13, 327-337. The active site of yeast aspartyl-trna synthetase: structural and functional aspects of the aminoacylation reaction. SNAP output
1aud RNA binding protein-RNA NMR Allain FH, Howe PW, Neuhaus D, Varani G (1997) "Structural basis of the RNA-binding specificity of human U1A protein." EMBO J., 16, 5764-5774. doi: 10.1093/emboj/16.18.5764. U1a-utrrna, NMR, 31 structures. SNAP output
1av6 transferase-RNA X-ray (2.8 Å) Hodel AE, Gershon PD, Quiocho FA (1998) "Structural basis for sequence-nonspecific recognition of 5'-capped mRNA by a cap-modifying enzyme." Mol.Cell, 1, 443-447. doi: 10.1016/S1097-2765(00)80044-1. Vaccinia methyltransferase vp39 complexed with m7g capped RNA hexamer and s-adenosylhomocysteine. SNAP output
1b23 gene regulation-RNA X-ray (2.6 Å) Nissen P, Thirup S, Kjeldgaard M, Nyborg J (1999) "The crystal structure of Cys-tRNACys-EF-Tu-GDPNP reveals general and specific features in the ternary complex and in tRNA." Structure Fold.Des., 7, 143-156. doi: 10.1016/S0969-2126(99)80021-5. E. coli cysteinyl-trna and t. aquaticus elongation factor ef-tu:gtp ternary complex. SNAP output
1b2m hydrolase-RNA X-ray (2.0 Å) Arni RK, Watanabe L, Ward RJ, Kreitman RJ, Kumar K, Walz Jr FG (1999) "Three-dimensional structure of ribonuclease T1 complexed with an isosteric phosphonate substrate analogue of GpU: alternate substrate binding modes and catalysis." Biochemistry, 38, 2452-2461. doi: 10.1021/bi982612q. Three-dimensional structure of ribonulcease t1 complexed with an isosteric phosphonate analogue of gpu: alternate substrate binding modes and catalysis.. SNAP output
1b7f RNA-binding protein-RNA X-ray (2.6 Å) Handa N, Nureki O, Kurimoto K, Kim I, Sakamoto H, Shimura Y, Muto Y, Yokoyama S (1999) "Structural basis for recognition of the tra mRNA precursor by the Sex-lethal protein." Nature, 398, 579-585. doi: 10.1038/19242. Sxl-lethal protein-RNA complex. SNAP output
1biv viral protein-RNA NMR Ye X, Kumar RA, Patel DJ (1995) "Molecular recognition in the bovine immunodeficiency virus Tat peptide-TAR RNA complex." Chem.Biol., 2, 827-840. doi: 10.1016/1074-5521(95)90089-6. Bovine immunodeficiency virus tat-tar complex, NMR, 5 structures. SNAP output
1bmv virus-RNA X-ray (3.0 Å) Chen ZG, Stauffacher C, Li Y, Schmidt T, Bomu W, Kamer G, Shanks M, Lomonossoff G, Johnson JE (1989) "Protein-RNA interactions in an icosahedral virus at 3.0 A resolution." Science, 245, 154-159. Protein-RNA interactions in an icosahedral virus at 3.0 angstroms resolution. SNAP output
1c04 ribosome X-ray (5.0 Å) Ban N, Nissen P, Hansen J, Capel M, Moore PB, Steitz TA (1999) "Placement of protein and RNA structures into a 5 A-resolution map of the 50S ribosomal subunit." Nature, 400, 841-847. doi: 10.1038/23641. Identification of known protein and RNA structures in a 5 a map of the large ribosomal subunit from haloarcula marismortui. SNAP output
1c0a ligase-RNA X-ray (2.4 Å) Eiler S, Dock-Bregeon A, Moulinier L, Thierry JC, Moras D (1999) "Synthesis of aspartyl-tRNA(Asp) in Escherichia coli--a snapshot of the second step." EMBO J., 18, 6532-6541. doi: 10.1093/emboj/18.22.6532. Crystal structure of the e. coli aspartyl-trna synthetase : trnaasp : aspartyl-adenylate complex. SNAP output
1c9s RNA binding protein-RNA X-ray (1.9 Å) Antson AA, Dodson EJ, Dodson G, Greaves RB, Chen X, Gollnick P (1999) "Structure of the trp RNA-binding attenuation protein, TRAP, bound to RNA." Nature, 401, 235-242. doi: 10.1038/45730. Crystal structure of a complex of trp RNA-binding attenuation protein with a 53-base single stranded RNA containing eleven gag triplets separated by au dinucleotides. SNAP output
1cgm virus fiber diffraction Wang H, Stubbs G (1994) "Structure determination of cucumber green mottle mosaic virus by X-ray fiber diffraction. Significance for the evolution of tobamoviruses." J.Mol.Biol., 239, 371-384. doi: 10.1006/jmbi.1994.1379. Structure determination of cucumber green mottle mosaic virus by x-ray fiber diffraction. significance for the evolution of tobamoviruses. SNAP output
1cvj gene regulation-RNA X-ray (2.6 Å) Deo RC, Bonanno JB, Sonenberg N, Burley SK (1999) "Recognition of polyadenylate RNA by the poly(A)-binding protein." Cell(Cambridge,Mass.), 98, 835-845. doi: 10.1016/S0092-8674(00)81517-2. X-ray crystal structure of the poly(a)-binding protein in complex with polyadenylate RNA. SNAP output
1cwp virus-RNA X-ray (3.2 Å) Speir JA, Munshi S, Wang G, Baker TS, Johnson JE (1995) "Structures of the native and swollen forms of cowpea chlorotic mottle virus determined by X-ray crystallography and cryo-electron microscopy." Structure, 3, 63-77. doi: 10.1016/S0969-2126(01)00135-6. Structures of the native and swollen forms of cowpea chlorotic mottle virus determined by x-ray crystallography and cryo-electron microscopy. SNAP output
1d6k ribosome NMR Stoldt M, Wohnert J, Ohlenschlager O, Gorlach M, Brown LR (1999) "The NMR structure of the 5S rRNA E-domain-protein L25 complex shows preformed and induced recognition." EMBO J., 18, 6508-6521. doi: 10.1093/emboj/18.22.6508. NMR solution structure of the 5s rrna e-loop-l25 complex. SNAP output
1d9d transferase-DNA, RNA X-ray (2.18 Å) Teplova M, Wallace ST, Tereshko V, Minasov G, Symons AM, Cook PD, Manoharan M, Egli M (1999) "Structural origins of the exonuclease resistance of a zwitterionic RNA." Proc.Natl.Acad.Sci.USA, 96, 14240-14245. doi: 10.1073/pnas.96.25.14240. Crystall structure of the complex of DNA polymerase i klenow fragment with short DNA fragment carrying 2'-0-aminopropyl-RNA modifications 5'-d(tcg)-ap(auc)-3'. SNAP output
1d9f transferase-DNA, RNA X-ray (3.0 Å) Teplova M, Wallace ST, Tereshko V, Minasov G, Symons AM, Cook PD, Manoharan M, Egli M (1999) "Structural origins of the exonuclease resistance of a zwitterionic RNA." Proc.Natl.Acad.Sci.USA, 96, 14240-14245. doi: 10.1073/pnas.96.25.14240. Crystal structure of the complex of DNA polymerase i klenow fragment with DNA tetramer carrying 2'-o-(3-aminopropyl)-RNA modification 5'-d(tt)-ap(u)-d(t)-3'. SNAP output
1ddl virus-RNA X-ray (2.7 Å) Larson SB, Day J, Canady MA, Greenwood A, McPherson A (2000) "Refined structure of desmodium yellow mottle tymovirus at 2.7 A resolution." J.Mol.Biol., 301, 625-642. doi: 10.1006/jmbi.2000.3983. Desmodium yellow mottle tymovirus. SNAP output
1dfu ribosome X-ray (1.8 Å) Lu M, Steitz TA (2000) "Structure of Escherichia coli ribosomal protein L25 complexed with a 5S rRNA fragment at 1.8-A resolution." Proc.Natl.Acad.Sci.USA, 97, 2023-2028. doi: 10.1073/pnas.97.5.2023. Crystal structure of e.coli ribosomal protein l25 complexed with a 5s rrna fragment at 1.8 Å resolution. SNAP output
1di2 RNA binding protein-RNA X-ray (1.9 Å) Ryter JM, Schultz SC (1998) "Molecular basis of double-stranded RNA-protein interactions: structure of a dsRNA-binding domain complexed with dsRNA." EMBO J., 17, 7505-7513. doi: 10.1093/emboj/17.24.7505. Crystal structure of a dsrna-binding domain complexed with dsrna: molecular basis of double-stranded RNA-protein interactions. SNAP output
1dk1 ribosome X-ray (2.8 Å) Nikulin A, Serganov A, Ennifar E, Tishchenko S, Nevskaya N, Shepard W, Portier C, Garber M, Ehresmann B, Ehresmann C, Nikonov S, Dumas P (2000) "Crystal structure of the S15-rRNA complex." Nat.Struct.Biol., 7, 273-277. doi: 10.1038/74028. Detailed view of a key element of the ribosome assembly: crystal structure of the s15-rrna complex. SNAP output
1drz RNA binding protein-RNA X-ray (2.3 Å) Ferre-D'Amare AR, Zhou K, Doudna JA (1998) "Crystal structure of a hepatitis delta virus ribozyme." Nature, 395, 567-574. doi: 10.1038/26912. U1a spliceosomal protein-hepatitis delta virus genomic ribozyme complex. SNAP output
1dul signaling protein-RNA X-ray (1.8 Å) Batey RT, Rambo RP, Lucast L, Rha B, Doudna JA (2000) "Crystal structure of the ribonucleoprotein core of the signal recognition particle." Science, 287, 1232-1239. doi: 10.1126/science.287.5456.1232. Structure of the ribonucleoprotein core of the e. coli signal recognition particle. SNAP output
1dz5 ribonucleoprotein-RNA NMR Varani L, Gunderson SI, Mattaj IW, Kay LE, Neuhaus D, Varani G (2000) "The NMR Structure of the 38kDa U1A Protein-Pie RNA Complex Reveals the Basis of Cooperativity in Regulation of Polyadenylation by Human U1A Protein." Nat.Struct.Biol., 7, 329. doi: 10.1038/74101. The NMR structure of the 38kda u1a protein-pie RNA complex reveals the basis of cooperativity in regulation of polyadenylation by human u1a protein. SNAP output
1e7k RNA binding protein X-ray (2.9 Å) Vidovic I, Nottrott S, Hartmuth K, Luhrmann R, Ficner R (2000) "Crystal Structure of the Spliceosomal 15.5Kd Protein Bound to a U4 Snrna Fragment." Mol.Cell, 6, 1331. doi: 10.1016/S1097-2765(00)00131-3. Crystal structure of the spliceosomal 15.5kd protein bound to a u4 snrna fragment. SNAP output
1e8o alu ribonucleoprotein particle X-ray (3.2 Å) Weichenrieder O, Wild K, Strub K, Cusack S (2000) "Structure and Assembly of the Alu Domain of the Mammalian Signal Recognition Particle." Nature, 408, 167. doi: 10.1038/35041507. Core of the alu domain of the mammalian srp. SNAP output
1ec6 RNA binding protein-RNA X-ray (2.4 Å) Lewis HA, Musunuru K, Jensen KB, Edo C, Chen H, Darnell RB, Burley SK (2000) "Sequence-specific RNA binding by a Nova KH domain: implications for paraneoplastic disease and the fragile X syndrome." Cell(Cambridge,Mass.), 100, 323-332. doi: 10.1016/S0092-8674(00)80668-6. Crystal structure of nova-2 kh3 k-homology RNA-binding domain bound to 20-mer RNA hairpin. SNAP output
1efw ligase-RNA X-ray (3.0 Å) Briand C, Poterszman A, Eiler S, Webster G, Thierry J, Moras D (2000) "An intermediate step in the recognition of tRNA(Asp) by aspartyl-tRNA synthetase." J.Mol.Biol., 299, 1051-1060. doi: 10.1006/jmbi.2000.3819. Crystal structure of aspartyl-trna synthetase from thermus thermophilus complexed to trnaasp from escherichia coli. SNAP output
1eiy ligase-RNA X-ray (3.3 Å) Goldgur Y, Mosyak L, Reshetnikova L, Ankilova V, Lavrik O, Khodyreva S, Safro M (1997) "The crystal structure of phenylalanyl-tRNA synthetase from thermus thermophilus complexed with cognate tRNAPhe." Structure, 5, 59-68. doi: 10.1016/S0969-2126(97)00166-4. The crystal structure of phenylalanyl-trna synthetase from thermus thermophilus complexed with cognate trnaphe. SNAP output
1ekz cell cycle-RNA NMR Ramos A, Grunert S, Adams J, Micklem DR, Proctor MR, Freund S, Bycroft M, St Johnston D, Varani G (2000) "RNA recognition by a Staufen double-stranded RNA-binding domain." EMBO J., 19, 997-1009. doi: 10.1093/emboj/19.5.997. NMR structure of the complex between the third dsrbd from drosophila staufen and a RNA hairpin. SNAP output
1eqq replication-RNA X-ray (3.2 Å) Matsumoto T, Morimoto Y, Shibata N, Kinebuchi T, Shimamoto N, Tsukihara T, Yasuoka N (2000) "Roles of functional loops and the C-terminal segment of a single-stranded DNA binding protein elucidated by X-Ray structure analysis." J.Biochem.(Tokyo), 127, 329-335. Single stranded DNA binding protein and ssDNA complex. SNAP output
1etf viral protein-RNA NMR Battiste JL, Mao H, Rao NS, Tan R, Muhandiram DR, Kay LE, Frankel AD, Williamson JR (1996) "Alpha helix-RNA major groove recognition in an HIV-1 rev peptide-RRE RNA complex." Science, 273, 1547-1551. Rev response element (rre) RNA complexed with rev peptide, NMR, minimized average structure. SNAP output
1etg viral protein-RNA NMR Battiste JL, Mao H, Rao NS, Tan R, Muhandiram DR, Kay LE, Frankel AD, Williamson JR (1996) "Alpha helix-RNA major groove recognition in an HIV-1 rev peptide-RRE RNA complex." Science, 273, 1547-1551. Rev response element (rre) RNA complexed with rev peptide, NMR, 19 structures. SNAP output
1euq ligase-RNA X-ray (3.1 Å) Sherlin LD, Bullock TL, Newberry KJ, Lipman RS, Hou YM, Beijer B, Sproat BS, Perona JJ (2000) "Influence of transfer RNA tertiary structure on aminoacylation efficiency by glutaminyl and cysteinyl-tRNA synthetases." J.Mol.Biol., 299, 431-446. doi: 10.1006/jmbi.2000.3749. Crystal structure of glutaminyl-trna synthetase complexed with a trna-gln mutant and an active-site inhibitor. SNAP output
1euy ligase-RNA X-ray (2.6 Å) Sherlin LD, Bullock TL, Newberry KJ, Lipman RS, Hou YM, Beijer B, Sproat BS, Perona JJ (2000) "Influence of transfer RNA tertiary structure on aminoacylation efficiency by glutaminyl and cysteinyl-tRNA synthetases." J.Mol.Biol., 299, 431-446. doi: 10.1006/jmbi.2000.3749. Glutaminyl-trna synthetase complexed with a trna mutant and an active site inhibitor. SNAP output
1exd ligase-RNA X-ray (2.7 Å) Bullock TL, Sherlin LD, Perona JJ (2000) "Tertiary core rearrangements in a tight binding transfer RNA aptamer." Nat.Struct.Biol., 7, 497-504. doi: 10.1038/75910. Crystal structure of a tight-binding glutamine trna bound to glutamine aminoacyl trna synthetase. SNAP output
1exy RNA binding protein-RNA NMR Jiang F, Gorin A, Hu W, Majumdar A, Baskerville S, Xu W, Ellington A, Patel DJ (1999) "Anchoring an extended HTLV-1 Rex peptide within an RNA major groove containing junctional base triples." Structure Fold.Des., 7, 1461-1472. doi: 10.1016/S0969-2126(00)88337-9. Solution structure of htlv-1 peptide bound to its RNA aptamer target. SNAP output
1f6u structural protein-RNA NMR Amarasinghe GK, De Guzman RN, Turner RB, Chancellor KJ, Wu ZR, Summers MF (2000) "NMR structure of the HIV-1 nucleocapsid protein bound to stem-loop SL2 of the psi-RNA packaging signal. Implications for genome recognition." J.Mol.Biol., 301, 491-511. doi: 10.1006/jmbi.2000.3979. NMR structure of the hiv-1 nucleocapsid protein bound to stem-loop sl2 of the psi-RNA packaging signal. implications for genome recognition. SNAP output
1f7u ligase-RNA X-ray (2.2 Å) Delagoutte B, Moras D, Cavarelli J (2000) "tRNA aminoacylation by arginyl-tRNA synthetase: induced conformations during substrates binding." EMBO J., 19, 5599-5610. doi: 10.1093/emboj/19.21.5599. Crystal structure of the arginyl-trna synthetase complexed with the trna(arg) and l-arg. SNAP output
1f7v ligase-RNA X-ray (2.9 Å) Delagoutte B, Moras D, Cavarelli J (2000) "tRNA aminoacylation by arginyl-tRNA synthetase: induced conformations during substrates binding." EMBO J., 19, 5599-5610. doi: 10.1093/emboj/19.21.5599. Crystal structure of yeast arginyl-trna synthetase complexed with the trnaarg. SNAP output
1f7y ribosome X-ray (2.8 Å) Ennifar E, Nikulin A, Tishchenko S, Serganov A, Nevskaya N, Garber M, Ehresmann B, Ehresmann C, Nikonov S, Dumas P (2000) "The crystal structure of UUCG tetraloop." J.Mol.Biol., 304, 35-42. doi: 10.1006/jmbi.2000.4204. The crystal structure of two uucg loops highlights the role played by 2'-hydroxyl groups in its unusual stability. SNAP output
1f8v virus-RNA X-ray (3.0 Å) Tang L, Johnson KN, Ball LA, Lin T, Yeager M, Johnson JE (2001) "The structure of pariacoto virus reveals a dodecahedral cage of duplex RNA." Nat.Struct.Biol., 8, 77-83. doi: 10.1038/83089. The structure of pariacoto virus reveals a dodecahedral cage of duplex RNA. SNAP output
1feu ribosome X-ray (2.3 Å) Fedorov R, Meshcheryakov V, Gongadze G, Fomenkova N, Nevskaya N, Selmer M, Laurberg M, Kristensen O, Al-Karadaghi S, Liljas A, Garber M, Nikonov S (2001) "Structure of ribosomal protein TL5 complexed with RNA provides new insights into the CTC family of stress proteins." Acta Crystallogr.,Sect.D, 57, 968-976. doi: 10.1107/S0907444901006291. Crystal structure of ribosomal protein tl5, one of the ctc family proteins, complexed with a fragment of 5s rrna.. SNAP output
1ffy ligase-RNA X-ray (2.2 Å) Silvian LF, Wang J, Steitz TA (1999) "Insights into editing from an ile-tRNA synthetase structure with tRNAile and mupirocin." Science, 285, 1074-1077. doi: 10.1126/science.285.5430.1074. Insights into editing from an ile-trna synthetase structure with trna(ile) and mupirocin. SNAP output
1fje structural protein-RNA NMR Allain FH, Bouvet P, Dieckmann T, Feigon J (2000) "Molecular basis of sequence-specific recognition of pre-ribosomal RNA by nucleolin." EMBO J., 19, 6870-6881. doi: 10.1093/emboj/19.24.6870. Solution structure of nucleolin rbd12 in complex with snre RNA. SNAP output
1fjg ribosome X-ray (3.0 Å) Carter AP, Clemons Jr WM, Brodersen DE, Morgan-Warren RJ, Wimberly BT, Ramakrishnan V (2000) "Functional insights from the structure of the 30S ribosomal subunit and its interactions with antibiotics." Nature, 407, 340-348. doi: 10.1038/35030019. Structure of the thermus thermophilus 30s ribosomal subunit in complex with the antibiotics streptomycin, spectinomycin, and paromomycin. SNAP output
1fka ribosome X-ray (3.3 Å) Schluenzen F, Tocilj A, Zarivach R, Harms J, Gluehmann M, Janell D, Bashan A, Bartels H, Agmon I, Franceschi F, Yonath A (2000) "Structure of functionally activated small ribosomal subunit at 3.3 angstroms resolution." Cell(Cambridge,Mass.), 102, 615-623. doi: 10.1016/S0092-8674(00)00084-2. Structure of functionally activated small ribosomal subunit at 3.3 Å resolution. SNAP output
1fnx immune system-RNA NMR Inoue M, Hirao M, Kasashima K, Kim I-S, Kawai G, Kigawa T, Sakamoto H, Muto Y, Yokoyama S (2000) "Solution structure of mouse HuC RNA-binding domains complexed with an AU-Rich element reveals determinants of neuronal differentiation." Solution structure of the huc rbd1-rbd2 complexed with the au-rich element. SNAP output
1fxl transcription-RNA X-ray (1.8 Å) Wang X, Tanaka Hall TM (2001) "Structural basis for recognition of AU-rich element RNA by the HuD protein." Nat.Struct.Biol., 8, 141-145. doi: 10.1038/84131. Crystal structure of hud and au-rich element of the c-fos RNA. SNAP output
1g1x ribosome X-ray (2.6 Å) Agalarov SC, Sridhar Prasad G, Funke PM, Stout CD, Williamson JR (2000) "Structure of the S15,S6,S18-rRNA complex: assembly of the 30S ribosome central domain." Science, 288, 107-112. doi: 10.1126/science.288.5463.107. Structure of ribosomal proteins s15, s6, s18, and 16s ribosomal RNA. SNAP output
1g2e transcription-RNA X-ray (2.3 Å) Wang X, Tanaka Hall TM (2001) "Structural basis for recognition of AU-rich element RNA by the HuD protein." Nat.Struct.Biol., 8, 141-145. doi: 10.1038/84131. Crystal structure of hud and au-rich element of the tumor necrosis factor alpha RNA. SNAP output
1g59 ligase-RNA X-ray (2.4 Å) Sekine S, Nureki O, Shimada A, Vassylyev DG, Yokoyama S (2001) "Structural basis for anticodon recognition by discriminating glutamyl-tRNA synthetase." Nat.Struct.Biol., 8, 203-206. doi: 10.1038/84927. Glutamyl-trna synthetase complexed with trna(glu).. SNAP output
1g70 viral protein-RNA NMR Gosser Y, Hermann T, Majumdar A, Hu W, Frederick R, Jiang F, Xu W, Patel DJ (2001) "Peptide-triggered conformational switch in HIV-1 RRE RNA complexes." Nat.Struct.Biol., 8, 146-150. doi: 10.1038/84138. Complex of hiv-1 rre-iib RNA with rsg-1.2 peptide. SNAP output
1gax ligase-RNA X-ray (2.9 Å) Fukai S, Nureki O, Sekine S, Shimada A, Tao J, Vassylyev DG, Yokoyama S (2000) "Structural basis for double-sieve discrimination of L-valine from L-isoleucine and L-threonine by the complex of tRNA(Val) and valyl-tRNA synthetase." Cell(Cambridge,Mass.), 103, 793-803. doi: 10.1016/S0092-8674(00)00182-3. Crystal structure of thermus thermophilus valyl-trna synthetase complexed with trna(val) and valyl-adenylate analogue. SNAP output
1gtf RNA binding protein-RNA X-ray (1.75 Å) Hopcroft NH, Wendt AL, Gollnick P, Antson AA (2002) "Specificity of Trap-RNA Interactions: Crystal Structures of Two Complexes with Different RNA Sequences." Acta Crystallogr.,Sect.D, 58, 615. doi: 10.1107/S0907444902003189. The structure of the trp RNA-binding attenuation protein (trap) bound to a 53-nucleotide RNA molecule containing gaguu repeats. SNAP output
1gtn RNA binding protein-RNA X-ray (2.5 Å) Hopcroft NH, Wendt AL, Gollnick P, Antson AA (2002) "Specificity of Trap-RNA Interactions: Crystal Structures of Two Complexes with Different RNA Sequences." Acta Crystallogr.,Sect.D, 58, 615. doi: 10.1107/S0907444902003189. Structure of the trp RNA-binding attenuation protein (trap) bound to an RNA molecule containing 11 gagcc repeats. SNAP output
1gtr complex (ligase-trna) X-ray (2.5 Å) Rould MA, Perona JJ, Steitz TA (1991) "Structural basis of anticodon loop recognition by glutaminyl-tRNA synthetase." Nature, 352, 213-218. doi: 10.1038/352213a0. Structural basis of anticodon loop recognition by glutaminyl-trna synthetase. SNAP output
1gts ligase-RNA X-ray (2.8 Å) Perona JJ, Rould MA, Steitz TA (1993) "Structural basis for transfer RNA aminoacylation by Escherichia coli glutaminyl-tRNA synthetase." Biochemistry, 32, 8758-8771. doi: 10.1021/bi00085a006. Structural basis for transfer RNA aminoaceylation by escherichia coli glutaminyl-trna synthetase. SNAP output
1h2c virus-viral protein X-ray (1.6 Å) Gomis-Ruth FX, Dessen A, Timmins J, Bracher A, Kolesnikowa L, Becker S, Klenk HD, Weissenhorn W (2003) "The Matrix Protein Vp40 from Ebola Virus Octamerizes Into Pore-Like Structures with Specific RNA Binding Properties." Structure, 11, 423. doi: 10.1016/S0969-2126(03)00050-9. Ebola virus matrix protein vp40 n-terminal domain in complex with RNA (high-resolution vp40[55-194] variant).. SNAP output
1h2d virus-viral protein X-ray (2.6 Å) Gomis-Ruth FX, Dessen A, Timmins J, Bracher A, Kolesnikowa L, Becker S, Klenk HD, Weissenhorn W (2003) "The Matrix Protein Vp40 from Ebola Virus Octamerizes Into Pore-Like Structures with Specific RNA Binding Properties." Structure, 11, 423. doi: 10.1016/S0969-2126(03)00050-9. Ebola virus matrix protein vp40 n-terminal domain in complex with RNA (low-resolution vp40[31-212] variant).. SNAP output
1h3e ligase X-ray (2.9 Å) Yaremchuk A, Kriklivyi I, Tukalo M, Cusack S (2002) "Class I Tyrosyl-tRNA Synthetase Has a Class II Mode or tRNA Recognition." Embo J., 21, 3829. doi: 10.1093/EMBOJ/CDF373. Tyrosyl-trna synthetase from thermus thermophilus complexed with wild-type trnatyr(gua) and with atp and tyrosinol. SNAP output
1h4q aminoacyl-trna synthetase X-ray (3.0 Å) Yaremchuk A, Tukalo M, Grotli M, Cusack S (2001) "A Succession of Substrate Induced Conformational Changes Ensures the Amino Acid Specificity of Thermus Thermophilus Prolyl-tRNA Synthetase: Comparison with Histidyl-tRNA Synthetase." J.Mol.Biol., 309, 989. doi: 10.1006/JMBI.2001.4712. Prolyl-trna synthetase from thermus thermophilus complexed with trnapro(cgg), atp and prolinol. SNAP output
1h4s aminoacyl-trna synthetase X-ray (2.85 Å) Yaremchuk A, Tukalo M, Grotli M, Cusack S (2001) "A Succession of Substrate Induced Conformational Changes Ensures the Amino Acid Specificity of Thermus Thermophilus Prolyl-tRNA Synthetase: Comparison with Histidyl-tRNA Synthetase." J.Mol.Biol., 309, 989. doi: 10.1006/JMBI.2001.4712. Prolyl-trna synthetase from thermus thermophilus complexed with trnapro(cgg) and a prolyl-adenylate analogue. SNAP output
1hc8 ribosome X-ray (2.8 Å) Conn GL, Gittis AG, Lattman EE, Misra VK, Draper DE (2002) "A Compact RNA Tertiary Structure Contains a Buried Backbone-K+ Complex." J.Mol.Biol., 318, 963. doi: 10.1016/S0022-2836(02)00147-X. Crystal structure of a conserved ribosomal protein-RNA complex. SNAP output
1hji bacteriophage hk022 NMR Faber C, Schaerpf M, Becker T, Sticht H, Roesch P (2001) "The Structure of the Coliphage Hk022 Nun Protein-Lambda-Phage Boxb RNA Complex. Implications for the Mechanism of Transcription Termination." J.Biol.Chem., 276, 32064. doi: 10.1074/JBC.M102975200. Bacteriophage hk022 nun-protein-nutboxb-RNA complex. SNAP output
1hnw ribosome X-ray (3.4 Å) Brodersen DE, Clemons Jr WM, Carter AP, Morgan-Warren RJ, Wimberly BT, Ramakrishnan V (2000) "The structural basis for the action of the antibiotics tetracycline, pactamycin, and hygromycin B on the 30S ribosomal subunit." Cell(Cambridge,Mass.), 103, 1143-1154. doi: 10.1016/S0092-8674(00)00216-6. Structure of the thermus thermophilus 30s ribosomal subunit in complex with tetracycline. SNAP output
1hnx ribosome X-ray (3.4 Å) Brodersen DE, Clemons Jr WM, Carter AP, Morgan-Warren RJ, Wimberly BT, Ramakrishnan V (2000) "The structural basis for the action of the antibiotics tetracycline, pactamycin, and hygromycin B on the 30S ribosomal subunit." Cell(Cambridge,Mass.), 103, 1143-1154. doi: 10.1016/S0092-8674(00)00216-6. Structure of the thermus thermophilus 30s ribosomal subunit in complex with pactamycin. SNAP output
1hnz ribosome X-ray (3.3 Å) Brodersen DE, Clemons Jr WM, Carter AP, Morgan-Warren RJ, Wimberly BT, Ramakrishnan V (2000) "The structural basis for the action of the antibiotics tetracycline, pactamycin, and hygromycin B on the 30S ribosomal subunit." Cell(Cambridge,Mass.), 103, 1143-1154. doi: 10.1016/S0092-8674(00)00216-6. Structure of the thermus thermophilus 30s ribosomal subunit in complex with hygromycin b. SNAP output
1hq1 signaling protein-RNA X-ray (1.52 Å) Batey RT, Sagar MB, Doudna JA (2001) "Structural and energetic analysis of RNA recognition by a universally conserved protein from the signal recognition particle." J.Mol.Biol., 307, 229-246. doi: 10.1006/jmbi.2000.4454. Structural and energetic analysis of RNA recognition by a universally conserved protein from the signal recognition particle. SNAP output
1hr0 ribosome X-ray (3.2 Å) Carter AP, Clemons Jr WM, Brodersen DE, Morgan-Warren RJ, Hartsch T, Wimberly BT, Ramakrishnan V (2001) "Crystal structure of an initiation factor bound to the 30S ribosomal subunit." Science, 291, 498-501. doi: 10.1126/science.1057766. Crystal structure of initiation factor if1 bound to the 30s ribosomal subunit. SNAP output
1hvu transferase-RNA X-ray (4.75 Å) Jaeger J, Restle T, Steitz TA (1998) "The structure of HIV-1 reverse transcriptase complexed with an RNA pseudoknot inhibitor." EMBO J., 17, 4535-4542. doi: 10.1093/emboj/17.15.4535. Human immunodeficiency virus type 1 reverse transcriptase complexed with a 33-base nucleotide RNA pseudoknot. SNAP output
1i5l RNA binding protein-RNA X-ray (2.75 Å) Toro I, Thore S, Mayer C, Basquin J, Seraphin B, Suck D (2001) "RNA binding in an Sm core domain: X-ray structure and functional analysis of an archaeal Sm protein complex." EMBO J., 20, 2293-2303. doi: 10.1093/emboj/20.9.2293. Crystal structure of an sm-like protein (af-sm1) from archaeoglobus fulgidus complexed with short poly-u RNA. SNAP output
1i6u ribosome X-ray (2.6 Å) Tishchenko S, Nikulin A, Fomenkova N, Nevskaya N, Nikonov O, Dumas P, Moine H, Ehresmann B, Ehresmann C, Piendl W, Lamzin V, Garber M, Nikonov S (2001) "Detailed analysis of RNA-protein interactions within the ribosomal protein S8-rRNA complex from the archaeon Methanococcus jannaschii." J.Mol.Biol., 311, 311-324. doi: 10.1006/jmbi.2001.4877. RNA-protein interactions: the crystal structure of ribosomal protein s8-rrna complex from methanococcus jannaschii. SNAP output
1i94 ribosome X-ray (3.2 Å) Pioletti M, Schlunzen F, Harms J, Zarivach R, Gluhmann M, Avila H, Bashan A, Bartels H, Auerbach T, Jacobi C, Hartsch T, Yonath A, Franceschi F (2001) "Crystal structures of complexes of the small ribosomal subunit with tetracycline, edeine and IF3." EMBO J., 20, 1829-1839. doi: 10.1093/emboj/20.8.1829. Crystal structures of the small ribosomal subunit with tetracycline, edeine and if3. SNAP output
1i9f de-novo protein-RNA NMR Zhang Q, Harada K, Cho HS, Frankel AD, Wemmer DE (2001) "Structural characterization of the complex of the Rev response element RNA with a selected peptide." Chem.Biol., 8, 511-520. doi: 10.1016/S1074-5521(01)00027-8. Structural characterization of the complex of the rev response element RNA with a selected peptide. SNAP output
1ibk ribosome X-ray (3.31 Å) Ogle JM, Brodersen DE, Clemons Jr WM, Tarry MJ, Carter AP, Ramakrishnan V (2001) "Recognition of cognate transfer RNA by the 30S ribosomal subunit." Science, 292, 897-902. doi: 10.1126/science.1060612. Structure of the thermus thermophilus 30s ribosomal subunit in complex with the antibiotic paromomycin. SNAP output
1ibl ribosome X-ray (3.11 Å) Ogle JM, Brodersen DE, Clemons Jr WM, Tarry MJ, Carter AP, Ramakrishnan V (2001) "Recognition of cognate transfer RNA by the 30S ribosomal subunit." Science, 292, 897-902. doi: 10.1126/science.1060612. Structure of the thermus thermophilus 30s ribosomal subunit in complex with a messenger RNA fragment and cognate transfer RNA anticodon stem-loop bound at the a site and with the antibiotic paromomycin. SNAP output
1ibm ribosome X-ray (3.31 Å) Ogle JM, Brodersen DE, Clemons Jr WM, Tarry MJ, Carter AP, Ramakrishnan V (2001) "Recognition of cognate transfer RNA by the 30S ribosomal subunit." Science, 292, 897-902. doi: 10.1126/science.1060612. Structure of the thermus thermophilus 30s ribosomal subunit in complex with a messenger RNA fragment and cognate transfer RNA anticodon stem-loop bound at the a site. SNAP output
1il2 ligase-RNA X-ray (2.6 Å) Moulinier L, Eiler S, Eriani G, Gangloff J, Thierry JC, Gabriel K, McClain WH, Moras D (2001) "The structure of an AspRS-tRNA(Asp) complex reveals a tRNA-dependent control mechanism." EMBO J., 20, 5290-5301. doi: 10.1093/emboj/20.18.5290. Crystal structure of the e. coli aspartyl-trna synthetase:yeast trnaasp:aspartyl-adenylate complex. SNAP output
1ivs ligase-RNA X-ray (2.9 Å) Fukai S, Nureki O, Sekine S-I, Shimada A, Vassylyev DG, Yokoyama S (2003) "Mechanism of molecular interactions for tRNA(Val) recognition by valyl-tRNA synthetase." RNA, 9, 100-111. doi: 10.1261/rna.2760703. Crystal structure of thermus thermophilus valyl-trna synthetase complexed with trna(val) and valyl-adenylate analogue. SNAP output
1j1u ligase-RNA X-ray (1.95 Å) Kobayashi T, Nureki O, Ishitani R, Yaremchuk A, Tukalo M, Cusack S, Sakamoto K, Yokoyama S (2003) "Structural basis for orthogonal tRNA specificities of tyrosyl-tRNA synthetases for genetic code expansion." NAT.STRUCT.BIOL., 10, 425-432. doi: 10.1038/nsb934. Crystal structure of archaeal tyrosyl-trna synthetase complexed with trna(tyr) and l-tyrosine. SNAP output
1j2b transferase-RNA X-ray (3.3 Å) Ishitani R, Nureki O, Nameki N, Okada N, Nishimura S, Yokoyama S (2003) "Alternative Tertiary Structure of tRNA for Recognition by a Posttranscriptional Modification Enzyme." Cell(Cambridge,Mass.), 113, 383-394. doi: 10.1016/S0092-8674(03)00280-0. Crystal structure of archaeosine trna-guanine transglycosylase complexed with lambda-form trna(val). SNAP output
1j5e ribosome X-ray (3.05 Å) Wimberly BT, Brodersen DE, Clemons Jr WM, Morgan-Warren RJ, Carter AP, Vonrhein C, Hartsch T, Ramakrishnan V (2000) "Structure of the 30S ribosomal subunit." Nature, 407, 327-339. doi: 10.1038/35030006. Structure of the thermus thermophilus 30s ribosomal subunit. SNAP output
1jbr hydrolase-RNA X-ray (2.15 Å) Yang X, Gerczei T, Glover LT, Correll CC (2001) "Crystal structures of restrictocin-inhibitor complexes with implications for RNA recognition and base flipping." Nat.Struct.Biol., 8, 968-973. doi: 10.1038/nsb1101-968. Crystal structure of the ribotoxin restrictocin and a 31-mer srd RNA inhibitor. SNAP output
1jbs hydrolase-RNA X-ray (1.97 Å) Yang X, Gerczei T, Glover LT, Correll CC (2001) "Crystal structures of restrictocin-inhibitor complexes with implications for RNA recognition and base flipping." Nat.Struct.Biol., 8, 968-973. doi: 10.1038/nsb1101-968. Crystal structure of ribotoxin restrictocin and a 29-mer srd RNA analog. SNAP output
1jbt hydrolase-RNA X-ray (2.7 Å) Yang X, Gerczei T, Glover LT, Correll CC (2001) "Crystal structures of restrictocin-inhibitor complexes with implications for RNA recognition and base flipping." Nat.Struct.Biol., 8, 968-973. doi: 10.1038/nsb1101-968. Crystal structure of ribotoxin restrictocin complexed with a 29-mer sarcin-ricin domain RNA analog. SNAP output
1jid signaling protein-RNA X-ray (1.8 Å) Wild K, Sinning I, Cusack S (2001) "Crystal structure of an early protein-RNA assembly complex of the signal recognition particle." Science, 294, 598-601. doi: 10.1126/science.1063839. Human srp19 in complex with helix 6 of human srp RNA. SNAP output
1jj2 ribosome X-ray (2.4 Å) Klein DJ, Schmeing TM, Moore PB, Steitz TA (2001) "The kink-turn: a new RNA secondary structure motif." EMBO J., 20, 4214-4221. doi: 10.1093/emboj/20.15.4214. Fully refined crystal structure of the haloarcula marismortui large ribosomal subunit at 2.4 angstrom resolution. SNAP output
1k1g gene regulation-RNA NMR Liu Z, Luyten I, Bottomley MJ, Messias AC, Houngninou-Molango S, Sprangers R, Zanier K, Kramer A, Sattler M (2001) "Structural basis for recognition of the intron branch site RNA by splicing factor 1." Science, 294, 1098-1102. doi: 10.1126/science.1064719. Structural basis for recognition of the intron branch site RNA by splicing factor 1. SNAP output
1k73 ribosome X-ray (3.01 Å) Hansen J, Moore PB, Steitz TA (2003) "Structures of Five Antibiotics Bound at the Peptidyl Transferase Center of the Large Ribosomal Subunit." J.Mol.Biol., 330, 1061-1075. doi: 10.1016/S0022-2836(03)00668-5. Co-crystal structure of anisomycin bound to the 50s ribosomal subunit. SNAP output
1k8a ribosome X-ray (3.0 Å) Hansen JL, Ippolito JA, Ban N, Nissen P, Moore PB, Steitz TA (2002) "The structures of four macrolide antibiotics bound to the large ribosomal subunit." Mol.Cell, 10, 117-128. doi: 10.1016/S1097-2765(02)00570-1. Co-crystal structure of carbomycin a bound to the 50s ribosomal subunit of haloarcula marismortui. SNAP output
1k8w lyase-RNA X-ray (1.85 Å) Hoang C, Ferre-D'Amare AR (2001) "Cocrystal structure of a tRNA Psi55 pseudouridine synthase: nucleotide flipping by an RNA-modifying enzyme." Cell(Cambridge,Mass.), 107, 929-939. doi: 10.1016/S0092-8674(01)00618-3. Crystal structure of the e. coli pseudouridine synthase trub bound to a t stem-loop RNA. SNAP output
1k9m ribosome X-ray (3.0 Å) Hansen JL, Ippolito JA, Ban N, Nissen P, Moore PB, Steitz TA (2002) "The structures of four macrolide antibiotics bound to the large ribosomal subunit." Mol.Cell, 10, 117-128. doi: 10.1016/S1097-2765(02)00570-1. Co-crystal structure of tylosin bound to the 50s ribosomal subunit of haloarcula marismortui. SNAP output
1kd1 ribosome X-ray (3.0 Å) Hansen JL, Ippolito JA, Ban N, Nissen P, Moore PB, Steitz TA (2002) "The structures of four macrolide antibiotics bound to the large ribosomal subunit." Mol.Cell, 10, 117-128. doi: 10.1016/S1097-2765(02)00570-1. Co-crystal structure of spiramycin bound to the 50s ribosomal subunit of haloarcula marismortui. SNAP output
1knz viral protein-RNA X-ray (2.45 Å) Deo RC, Groft CM, Rajashankar KR, Burley SK (2002) "Recognition of the rotavirus mRNA 3' consensus by an asymmetric NSP3 homodimer." Cell(Cambridge,Mass.), 108, 71-81. doi: 10.1016/S0092-8674(01)00632-8. Recognition of the rotavirus mrna 3' consensus by an asymmetric nsp3 homodimer. SNAP output
1kog ligase-RNA X-ray (3.5 Å) Torres-Larios A, Dock-Bregeon AC, Romby P, Rees B, Sankaranarayanan R, Caillet J, Springer M, Ehresmann C, Ehresmann B, Moras D (2002) "Structural basis of translational control by Escherichia coli threonyl tRNA synthetase." Nat.Struct.Biol., 9, 343-347. Crystal structure of e. coli threonyl-trna synthetase interacting with the essential domain of its mrna operator. SNAP output
1kq2 translation-RNA X-ray (2.71 Å) Schumacher MA, Pearson RF, Moller T, Valentin-Hansen P, Brennan RG (2002) "Structures of the pleiotropic translational regulator Hfq and an Hfq-RNA complex: a bacterial Sm-like protein." EMBO J., 21, 3546-3556. doi: 10.1093/emboj/cdf322. Crystal structure of an hfq-RNA complex. SNAP output
1kqs ribosome X-ray (3.1 Å) Schmeing TM, Seila AC, Hansen JL, Freeborn B, Soukup JK, Scaringe SA, Strobel SA, Moore PB, Steitz TA (2002) "A pre-translocational intermediate in protein synthesis observed in crystals of enzymatically active 50S subunits." Nat.Struct.Biol., 9, 225-230. The haloarcula marismortui 50s complexed with a pretranslocational intermediate in protein synthesis. SNAP output
1kuq ribosome X-ray (2.84 Å) Revtovich SV, Nikulin AD, Nikonov SV (2004) "Role of N-terminal helix in interaction of ribosomal protein S15 with 16S rRNA." Biochemistry Mosc., 69, 1319-1323. doi: 10.1007/s10541-005-0076-5. Crystal structure of t3c mutant s15 ribosomal protein in complex with 16s rrna. SNAP output
1l1c transcription-RNA NMR Yang Y, Declerck N, Manival X, Aymerich S, Kochoyan M (2002) "Solution structure of the LicT-RNA antitermination complex: CAT clamping RAT." EMBO J., 21, 1987-1997. doi: 10.1093/emboj/21.8.1987. Structure of the lict bacterial antiterminator protein in complex with its RNA target. SNAP output
1l9a signaling protein-RNA X-ray (2.9 Å) Oubridge C, Kuglstatter A, Jovine L, Nagai K (2002) "Crystal structure of SRP19 in complex with the S domain of SRP RNA and its implication for the assembly of the signal recognition particle." Mol.Cell, 9, 1251-1261. doi: 10.1016/S1097-2765(02)00530-0. Crystal structure of srp19 in complex with the s domain of signal recognition particle RNA. SNAP output
1laj virus-RNA X-ray (3.4 Å) Lucas RW, Larson SB, Canady MA, McPherson A (2002) "The Structure of Tomato Aspermy Virus by X-Ray Crystallography." J.STRUCT.BIOL., 139, 90-102. doi: 10.1016/S1047-8477(02)00561-0. The structure of tomato aspermy virus by x-ray crystallography. SNAP output
1lng signaling protein-RNA X-ray (2.3 Å) Hainzl T, Huang S, Sauer-Eriksson AE (2002) "Structure of the SRP19 RNA complex and implications for signal recognition particle assembly." Nature, 417, 767-771. doi: 10.1038/nature00768. Crystal structure of the srp19-7s.s srp RNA complex of m. jannaschii. SNAP output
1m1k ribosome X-ray (3.2 Å) Hansen JL, Ippolito JA, Ban N, Nissen P, Moore PB, Steitz TA (2002) "The structures of four macrolide antibiotics bound to the large ribosomal subunit." Mol.Cell, 10, 117-128. doi: 10.1016/S1097-2765(02)00570-1. Co-crystal structure of azithromycin bound to the 50s ribosomal subunit of haloarcula marismortui. SNAP output
1m5k translation-RNA X-ray (2.4 Å) Rupert PB, Massey AP, Sigurdsson ST, Ferre-D'Amare AR (2002) "Transition state stabilization by a catalytic RNA." Science, 298, 1421-1424. doi: 10.1126/science.1076093. Crystal structure of a hairpin ribozyme in the catalytically-active conformation. SNAP output
1m5o translation-RNA X-ray (2.2 Å) Rupert PB, Massey AP, Sigurdsson ST, Ferre-D'Amare AR (2002) "Transition state stabilization by a catalytic RNA." Science, 298, 1421-1424. doi: 10.1126/science.1076093. Transition state stabilization by a catalytic RNA. SNAP output
1m5p translation-RNA X-ray (2.6 Å) Rupert PB, Massey AP, Sigurdsson ST, Ferre-D'Amare AR (2002) "Transition state stabilization by a catalytic RNA." Science, 298, 1421-1424. doi: 10.1126/science.1076093. Transition state stabilization by a catalytic RNA. SNAP output
1m5v translation-RNA X-ray (2.4 Å) Rupert PB, Massey AP, Sigurdsson ST, Ferre-D'Amare AR (2002) "Transition state stabilization by a catalytic RNA." Science, 298, 1421-1424. doi: 10.1126/science.1076093. Transition state stabilization by a catalytic RNA. SNAP output
1m8v RNA binding protein-RNA X-ray (2.6 Å) Thore S, Mayer C, Sauter C, Weeks S, Suck D (2003) "Crystal Structure of Pyrococcus abyssii Sm core and its Complex with RNA: Common Features of RNA-binding in Archaea and Eukarya." J.Biol.Chem., 278, 1239-1247. doi: 10.1074/jbc.M207685200. Structure of pyrococcus abyssii sm protein in complex with a uridine heptamer. SNAP output
1m8w RNA binding protein-RNA X-ray (2.2 Å) Wang X, McLachlan J, Zamore PD, Hall TMT (2002) "MODULAR RECOGNITION OF RNA BY A HUMAN PUMILIO-HOMOLOGY DOMAIN." CELL(CAMBRIDGE,MASS.), 110, 501-512. doi: 10.1016/S0092-8674(02)00873-5. Crystal structure of the pumilio-homology domain from human pumilio1 in complex with nre1-19 RNA. SNAP output
1m8x RNA binding protein-RNA X-ray (2.2 Å) Wang X, McLachlan J, Zamore PD, Hall TMT (2002) "MODULAR RECOGNITION OF RNA BY A HUMAN PUMILIO-HOMOLOGY DOMAIN." CELL(CAMBRIDGE,MASS.), 110, 501-512. doi: 10.1016/S0092-8674(02)00873-5. Crystal structure of the pumilio-homology domain from human pumilio1 in complex with nre1-14 RNA. SNAP output
1m8y RNA binding protein-RNA X-ray (2.6 Å) Wang X, McLachlan J, Zamore PD, Hall TMT (2002) "MODULAR RECOGNITION OF RNA BY A HUMAN PUMILIO-HOMOLOGY DOMAIN." CELL(CAMBRIDGE,MASS.), 110, 501-512. doi: 10.1016/S0092-8674(02)00873-5. Crystal structure of the pumilio-homology domain from human pumilio1 in complex with nre2-10 RNA. SNAP output
1m90 ribosome X-ray (2.8 Å) Hansen JL, Schmeing TM, Moore PB, Steitz TA (2002) "Structural insights into peptide bond formation." Proc.Natl.Acad.Sci.USA, 99, 11670-11675. doi: 10.1073/pnas.172404099. Co-crystal structure of cca-phe-caproic acid-biotin and sparsomycin bound to the 50s ribosomal subunit. SNAP output
1mfq signaling protein-RNA X-ray (3.1 Å) Kuglstatter A, Oubridge C, Nagai K (2002) "Induced structural changes of 7SL RNA during the assembly of human signal recognition particle." Nat.Struct.Biol., 9, 740-744. doi: 10.1038/nsb843. Crystal structure analysis of a ternary s-domain complex of human signal recognition particle. SNAP output
1mji ribosome X-ray (2.5 Å) Perederina A, Nevskaya N, Nikonov O, Nikulin A, Dumas P, Yao M, Tanaka I, Garber M, Gongadze G, Nikonov S (2002) "Detailed analysis of RNA-protein interactions within the bacterial ribosomal protein L5/5S rRNA complex." RNA, 8, 1548-1557. Detailed analysis of RNA-protein interactions within the bacterial ribosomal protein l5-5s rrna complex. SNAP output
1mms ribosome X-ray (2.57 Å) Wimberly BT, Guymon R, McCutcheon JP, White SW, Ramakrishnan V (1999) "A detailed view of a ribosomal active site: the structure of the L11-RNA complex." Cell(Cambridge,Mass.), 97, 491-502. doi: 10.1016/S0092-8674(00)80759-X. Crystal structure of the ribosomal protein l11-RNA complex. SNAP output
1mnb viral protein-RNA NMR Puglisi JD, Chen L, Blanchard S, Frankel AD (1995) "Solution structure of a bovine immunodeficiency virus Tat-TAR peptide-RNA complex." Science, 270, 1200-1203. Biv tat peptide (residues 68-81), NMR, minimized average structure. SNAP output
1mzp ribosome X-ray (2.65 Å) Nikulin A, Eliseikina I, Tishchenko S, Nevskaya N, Davydova N, Platonova O, Piendl W, Selmer M, Liljas A, Drygin D, Zimmermann R, Garber M, Nikonov S (2003) "Structure of the L1 protuberance in the ribosome." Nat.Struct.Biol., 10, 104-108. doi: 10.1038/nsb886. Structure of the l1 protuberance in the ribosome. SNAP output
1n1h transferase-RNA X-ray (2.8 Å) Tao Y, Farsetta DL, Nibert ML, Harrison SC (2002) "RNA Synthesis in a Cage--Structural Studies of Reovirus Polymerase [lambda] 3." Cell(Cambridge,Mass.), 111, 733-745. doi: 10.1016/S0092-8674(02)01110-8. Initiation complex of polymerase lambda3 from reovirus. SNAP output
1n32 ribosome X-ray (3.0 Å) Ogle JM, Murphy IV FV, Tarry MJ, Ramakrishnan V (2002) "Selection of tRNA by the Ribosome Requires a Transition from an Open to a Closed Form." Cell(Cambridge,Mass.), 111, 721-732. doi: 10.1016/S0092-8674(02)01086-3. Structure of the thermus thermophilus 30s ribosomal subunit bound to codon and near-cognate transfer RNA anticodon stem-loop mismatched at the first codon position at the a site with paromomycin. SNAP output
1n33 ribosome X-ray (3.35 Å) Ogle JM, Murphy IV FV, Tarry MJ, Ramakrishnan V (2002) "Selection of tRNA by the Ribosome Requires a Transition from an Open to a Closed Form." Cell(Cambridge,Mass.), 111, 721-732. doi: 10.1016/S0092-8674(02)01086-3. Structure of the thermus thermophilus 30s ribosomal subunit bound to codon and near-cognate transfer RNA anticodon stem-loop mismatched at the second codon position at the a site with paromomycin. SNAP output
1n34 ribosome X-ray (3.8 Å) Ogle JM, Murphy IV FV, Tarry MJ, Ramakrishnan V (2002) "Selection of tRNA by the Ribosome Requires a Transition from an Open to a Closed Form." Cell(Cambridge,Mass.), 111, 721-732. doi: 10.1016/S0092-8674(02)01086-3. Structure of the thermus thermophilus 30s ribosomal subunit in the presence of codon and crystallographically disordered near-cognate transfer RNA anticodon stem-loop mismatched at the first codon position. SNAP output
1n35 transferase-RNA X-ray (2.5 Å) Tao Y, Farsetta DL, Nibert ML, Harrison SC (2002) "RNA Synthesis in a Cage--Structural Studies of Reovirus Polymerase [lambda] 3." Cell(Cambridge,Mass.), 111, 733-745. doi: 10.1016/S0092-8674(02)01110-8. Lambda3 elongation complex with four phosphodiester bond formed. SNAP output
1n36 ribosome X-ray (3.65 Å) Ogle JM, Murphy IV FV, Tarry MJ, Ramakrishnan V (2002) "Selection of tRNA by the Ribosome Requires a Transition from an Open to a Closed Form." Cell(Cambridge,Mass.), 111, 721-732. doi: 10.1016/S0092-8674(02)01086-3. Structure of the thermus thermophilus 30s ribosomal subunit in the presence of crystallographically disordered codon and near-cognate transfer RNA anticodon stem-loop mismatched at the second codon position. SNAP output
1n38 transferase-RNA X-ray (2.8 Å) Tao Y, Farsetta DL, Nibert ML, Harrison SC (2002) "RNA Synthesis in a Cage--Structural Studies of Reovirus Polymerase [lambda] 3." Cell(Cambridge,Mass.), 111, 733-745. doi: 10.1016/S0092-8674(02)01110-8. Reovirus polymerase lambda3 elongation complex with one phosphodiester bond formed. SNAP output
1n77 ligase-RNA X-ray (2.4 Å) Sekine S, Nureki O, Dubois DY, Bernier S, Chenevert R, Lapointe J, Vassylyev DG, Yokoyama S (2003) "ATP binding by glutamyl-tRNA synthetase is switched to the productive mode by tRNA binding." EMBO J., 22, 676-688. doi: 10.1093/emboj/cdg053. Crystal structure of thermus thermophilus glutamyl-trna synthetase complexed with trna(glu) and atp.. SNAP output
1n78 ligase-RNA X-ray (2.1 Å) Sekine S, Nureki O, Dubois DY, Bernier S, Chenevert R, Lapointe J, Vassylyev DG, Yokoyama S (2003) "ATP binding by glutamyl-tRNA synthetase is switched to the productive mode by tRNA binding." EMBO J., 22, 676-688. doi: 10.1093/emboj/cdg053. Crystal structure of thermus thermophilus glutamyl-trna synthetase complexed with trna(glu) and glutamol-amp.. SNAP output
1n8r ribosome-antibiotic X-ray (3.0 Å) Hansen J, Moore PB, Steitz TA (2003) "Structures of Five Antibiotics Bound at the Peptidyl Transferase Center of the Large Ribosomal Subunit." J.Mol.Biol., 330, 1061-1075. doi: 10.1016/S0022-2836(03)00668-5. Structure of large ribosomal subunit in complex with virginiamycin m. SNAP output
1nb7 transferase-RNA X-ray (2.9 Å) O'Farrell D, Trowbridge R, Rowlands D, Jager J (2003) "Substrate complexes of hepatitis C virus RNA polymerase (HC-J4): structural evidence for nucleotide import and de-novo initiation." J.Mol.Biol., 326, 1025-1035. doi: 10.1016/S0022-2836(02)01439-0. Hc-j4 RNA polymerase complexed with short RNA template strand. SNAP output
1nji ribosome X-ray (3.0 Å) Hansen J, Moore PB, Steitz TA (2003) "Structures of Five Antibiotics Bound at the Peptidyl Transferase Center of the Large Ribosomal Subunit." J.Mol.Biol., 330, 1061-1075. doi: 10.1016/S0022-2836(03)00668-5. Structure of chloramphenicol bound to the 50s ribosomal subunit. SNAP output
1njm ribosome X-ray (3.6 Å) Bashan A, Agmon I, Zarivatch R, Schluenzen F, Harms JM, Berisio R, Bartels H, Franceschi F, Auerbach T, Hansen HA, Kossoy E, Kessler M, Yonath A (2003) "Structural basis of the ribosomal machinery for Peptide bond formation, translocation, and nascent chain progression." Mol.Cell, 11, 91-102. doi: 10.1016/S1097-2765(03)00009-1. The crystal structure of the 50s large ribosomal subunit from deinococcus radiodurans complexed with a trna acceptor stem mimic (asm) and the antibiotic sparsomycin. SNAP output
1njp ribosome X-ray (3.5 Å) Bashan A, Agmon I, Zarivatch R, Schluenzen F, Harms JM, Berisio R, Bartels H, Franceschi F, Auerbach T, Hansen HA, Kossoy E, Kessler M, Yonath A (2003) "Structural basis of the ribosomal machinery for Peptide bond formation, translocation, and nascent chain progression." Mol.Cell, 11, 91-102. doi: 10.1016/S1097-2765(03)00009-1. The crystal structure of the 50s large ribosomal subunit from deinococcus radiodurans complexed with a trna acceptor stem mimic (asm). SNAP output
1nyb transcription-RNA NMR Cilley CD, Williamson JR (2003) "Structural mimicry in the phage phi21 N peptide-boxB RNA complex." RNA, 9, 663-676. doi: 10.1261/rna.2189203. Solution structure of the bacteriophage phi21 n peptide-boxb RNA complex. SNAP output
1o0b ligase-RNA X-ray (2.7 Å) Bullock TL, Uter N, Nissan TA, Perona JJ (2003) "Amino Acid Discrimination by a class I aminoacyl-tRNA synthetase specified by negative determinants." J.Mol.Biol., 328, 395-408. doi: 10.1016/S0022-2836(03)00305-X. Crystal structure of l-glutamine and ampcpp bound to glutamine aminoacyl trna synthetase. SNAP output
1o0c ligase-RNA X-ray (2.7 Å) Bullock TL, Uter N, Nissan TA, Perona JJ (2003) "Amino Acid Discrimination by a class I aminoacyl-tRNA synthetase specified by negative determinants." J.Mol.Biol., 328, 395-408. doi: 10.1016/S0022-2836(03)00305-X. Crystal structure of l-glutamate and ampcpp bound to glutamine aminoacyl trna synthetase. SNAP output
1ob2 hydrolase-nuclear protein X-ray (3.35 Å) Nielsen RC, Kristensen O, Kjeldgaard M, Thirup S, Nissen P "Kirromycin Defines a Specific Domain Arrangement of Elongation Factor EF-TU." E. coli elongation factor ef-tu complexed with the antibiotic kirromycin, a gtp analog, and phe-trna. SNAP output
1ob5 hydrolase X-ray (3.1 Å) Parmeggiani A, Krab IM, Watanabe T, Nielsen RC, Dahlberg C, Nyborg J, Nissen P (2006) "Enacyloxin Iia Pinpoints a Binding Pocket of Elongation Factor TU for Development of Novel Antibiotics." J.Biol.Chem., 281, 2893. doi: 10.1074/JBC.M505951200. T. aquaticus elongation factor ef-tu complexed with the antibiotic enacyloxin iia, a gtp analog, and phe-trna. SNAP output
1oln ribosome-antibiotic multiple methods: solution nmr, theoretical model Lentzen G, Klinck R, Matassova N, Aboul-Ela F, Murchie AIH (2003) "Structural Basis for Contrasting Activities of Ribosome Binding Thiazole Antibiotics." Chem.Biol., 10, 769. doi: 10.1016/S1074-5521(03)00173-X. Model for thiostrepton antibiotic binding to l11 substrate from 50s ribosomal RNA. SNAP output
1ooa transcription-RNA X-ray (2.45 Å) Huang DB, Vu D, Cassiday LA, Zimmerman JM, Maher III LJ, Ghosh G (2003) "Crystal structure of NF-kappaB (p50)2 complexed to a high-affinity RNA aptamer." Proc.Natl.Acad.Sci.USA, 100, 9268-9273. doi: 10.1073/pnas.1632011100. Crystal structure of nf-kb(p50)2 complexed to a high-affinity RNA aptamer. SNAP output
1p6v RNA binding protein-RNA X-ray (3.2 Å) Gutmann S, Haebel PW, Metzinger L, Sutter M, Felden B, Ban N (2003) "Crystal structure of the transfer-RNA domain of transfer-messenger RNA in complex with SmpB." Nature, 424, 699-703. doi: 10.1038/nature01831. Crystal structure of the trna domain of transfer-messenger RNA in complex with smpb. SNAP output
1pgl virus-RNA X-ray (2.8 Å) Lin T, Cavarelli J, Johnson JE (2003) "Evidence for assembly-dependent folding of protein and RNA in an icosahedral virus." Virology, 314, 26-33. doi: 10.1016/S0042-6822(03)00457-4. Bean pod mottle virus (bpmv), middle component. SNAP output
1pvo transcription-RNA X-ray (3.0 Å) Skordalakes E, Berger JM (2003) "Structure of the Rho transcription terminator: mechanism of mRNA recognition and helicase loading." Cell(Cambridge,Mass.), 114, 135-146. doi: 10.1016/S0092-8674(03)00512-9. X-ray crystal structure of rho transcription termination factor in complex with ssrna substrate and anppnp. SNAP output
1q2r transferase-RNA X-ray (2.9 Å) Xie W, Liu X, Huang RH (2003) "Chemical trapping and crystal structure of a catalytic tRNA guanine transglycosylase covalent intermediate." Nat.Struct.Biol., 10, 781-788. doi: 10.1038/nsb976. Chemical trapping and crystal structure of a catalytic trna guanine transglycosylase covalent intermediate. SNAP output
1q2s transferase-RNA X-ray (3.2 Å) Xie W, Liu X, Huang RH (2003) "Chemical trapping and crystal structure of a catalytic tRNA guanine transglycosylase covalent intermediate." Nat.Struct.Biol., 10, 781-788. doi: 10.1038/nsb976. Chemical trapping and crystal structure of a catalytic trna guanine transglycosylase covalent intermediate. SNAP output
1q7y ribosome X-ray (3.2 Å) Hansen JL, Schmeing TM, Moore PB, Steitz TA (2002) "Structural Insights Into Peptide Bond Formation." Proc.Natl.Acad.Sci.USA, 99, 11670-11675. doi: 10.1073/pnas.172404099. Crystal structure of ccdap-puromycin bound at the peptidyl transferase center of the 50s ribosomal subunit. SNAP output
1q81 ribosome X-ray (2.95 Å) Hansen JL, Schmeing TM, Moore PB, Steitz TA (2002) "Structural Insights into Peptide Bond Formation." Proc.Natl.Acad.Sci.USA, 99, 11670-11675. doi: 10.1073/pnas.172404099. Crystal structure of minihelix with 3' puromycin bound to a-site of the 50s ribosomal subunit.. SNAP output
1q82 ribosome X-ray (2.98 Å) Hansen JL, Schmeing TM, Moore PB, Steitz TA (2002) "Structural Insights Into Peptide Bond Formation." Proc.Natl.Acad.Sci.USA, 99, 11670-11675. doi: 10.1073/pnas.172404099. Crystal structure of cc-puromycin bound to the a-site of the 50s ribosomal subunit. SNAP output
1q86 ribosome X-ray (3.0 Å) Hansen JL, Schmeing TM, Moore PB, Steitz TA (2002) "Structural insights into peptide bond formation." Proc.Natl.Acad.Sci.USA, 99, 11670-11675. doi: 10.1073/pnas.172404099. Crystal structure of cca-phe-cap-biotin bound simultaneously at half occupancy to both the a-site and p-site of the the 50s ribosomal subunit.. SNAP output
1qa6 ribosome X-ray (2.8 Å) Conn GL, Draper DE, Lattman EE, Gittis AG (1999) "Crystal structure of a conserved ribosomal protein-RNA complex." Science, 284, 1171-1174. doi: 10.1126/science.284.5417.1171. Crystal structure of a conserved ribosomal protein-RNA complex. SNAP output
1qf6 ligase-RNA X-ray (2.9 Å) Sankaranarayanan R, Dock-Bregeon AC, Romby P, Caillet J, Springer M, Rees B, Ehresmann C, Ehresmann B, Moras D (1999) "The structure of threonyl-tRNA synthetase-tRNA(Thr) complex enlightens its repressor activity and reveals an essential zinc ion in the active site." Cell(Cambridge,Mass.), 97, 371-381. doi: 10.1016/S0092-8674(00)80746-1. Structure of e. coli threonyl-trna synthetase complexed with its cognate trna. SNAP output
1qfq transcription-RNA NMR Schaerpf M, Sticht H, Schweimer K, Boehm M, Hoffmann S, Roesch P (2000) "Antitermination in bacteriophage lambda. The structure of the N36 peptide-boxB RNA complex." Eur.J.Biochem., 267, 2397-2408. doi: 10.1046/j.1432-1327.2000.01251.x. Bacteriophage lambda n-protein-nutboxb-RNA complex. SNAP output
1qrs ligase-RNA X-ray (2.6 Å) Arnez JG, Steitz TA (1996) "Crystal structures of three misacylating mutants of Escherichia coli glutaminyl-tRNA synthetase complexed with tRNA(Gln) and ATP." Biochemistry, 35, 14725-14733. doi: 10.1021/bi961532o. Glutaminyl-trna synthetase mutant d235n complexed with glutamine transfer RNA. SNAP output
1qrt ligase-RNA X-ray (2.7 Å) Arnez JG, Steitz TA (1996) "Crystal structures of three misacylating mutants of Escherichia coli glutaminyl-tRNA synthetase complexed with tRNA(Gln) and ATP." Biochemistry, 35, 14725-14733. doi: 10.1021/bi961532o. Glutaminyl-trna synthetase mutant d235g complexed with glutamine transfer RNA. SNAP output
1qru ligase-RNA X-ray (3.0 Å) Arnez JG, Steitz TA (1996) "Crystal structures of three misacylating mutants of Escherichia coli glutaminyl-tRNA synthetase complexed with tRNA(Gln) and ATP." Biochemistry, 35, 14725-14733. doi: 10.1021/bi961532o. Glutaminyl-trna synthetase mutant i129t complexed with glutamine transfer RNA. SNAP output
1qtq ligase-RNA X-ray (2.25 Å) Rath VL, Silvian LF, Beijer B, Sproat BS, Steitz TA (1998) "How glutaminyl-tRNA synthetase selects glutamine." Structure, 6, 439-449. doi: 10.1016/S0969-2126(98)00046-X. Glutaminyl-trna synthetase complexed with trna and an amino acid analog. SNAP output
1qu2 ligase-RNA X-ray (2.2 Å) Silvian LF, Wang J, Steitz TA (1999) "Insights into editing from an ile-tRNA synthetase structure with tRNAile and mupirocin." Science, 285, 1074-1077. doi: 10.1126/science.285.5430.1074. Insights into editing from an ile-trna synthetase structure with trna(ile) and mupirocin. SNAP output
1qu3 ligase-RNA X-ray (2.9 Å) Silvian LF, Wang J, Steitz TA (1999) "Insights into editing from an ile-tRNA synthetase structure with tRNAile and mupirocin." Science, 285, 1074-1077. doi: 10.1126/science.285.5430.1074. Insights into editing from an ile-trna synthetase structure with trna(ile) and mupirocin. SNAP output
1qvf ribosome X-ray (3.1 Å) Schmeing TM, Moore PB, Steitz TA (2003) "Structures of deacylated tRNA mimics bound to the E site of the large ribosomal subunit." RNA, 9, 1345-1352. doi: 10.1261/rna.5120503. Structure of a deacylated trna minihelix bound to the e site of the large ribosomal subunit of haloarcula marismortui. SNAP output
1qvg ribosome X-ray (2.9 Å) Schmeing TM, Moore PB, Steitz TA (2003) "Structures of deacylated tRNA mimics bound to the E site of the large ribosomal subunit." RNA, 9, 1345-1352. doi: 10.1261/rna.5120503. Structure of cca oligonucleotide bound to the trna binding sites of the large ribosomal subunit of haloarcula marismortui. SNAP output
1qzw signaling protein-RNA X-ray (4.1 Å) Rosendal KR, Wild K, Montoya G, Sinning I (2003) "Crystal structure of the complete core of archaeal signal recognition particle and implications for interdomain communication." Proc.Natl.Acad.Sci.USA, 100, 14701-14706. doi: 10.1073/pnas.2436132100. Crystal structure of the complete core of archaeal srp and implications for inter-domain communication. SNAP output
1r3e lyase-RNA X-ray (2.1 Å) Pan H, Agarwalla S, Moustakas DT, Finer-Moore J, Stroud RM (2003) "Crystal Structure of tRNA Pseudouridine Synthase TruB and Its RNA Complex: RNA Recognition Through a Combination of Rigid Docking and Induced Fit." Proc.Natl.Acad.Sci.USA, 100, 12648-12653. doi: 10.1073/pnas.2135585100. Crystal structure of trna pseudouridine synthase trub and its RNA complex: RNA-protein recognition through a combination of rigid docking and induced fit. SNAP output
1r9f viral protein-RNA X-ray (1.85 Å) Ye K, Malinina L, Patel DJ (2003) "Recognition of small interfering RNA by a viral suppressor of RNA." Nature, 426, 874-878. doi: 10.1038/nature02213. Crystal structure of p19 complexed with 19-bp small interfering RNA. SNAP output
1rc7 hydrolase-RNA X-ray (2.15 Å) Blaszczyk J, Gan J, Tropea JE, Court DL, Waugh DS, Ji X (2004) "Noncatalytic Assembly of Ribonuclease III with Double-Stranded RNA." Structure, 12, 457-466. doi: 10.1016/j.str.2004.02.004. Crystal structure of rnase iii mutant e110k from aquifex aeolicus complexed with ds-RNA at 2.15 angstrom resolution. SNAP output
1rgo RNA binding protein NMR Hudson BP, Martinez-Yamout MA, Dyson HJ, Wright PE (2004) "Recognition of the mRNA AU-rich element by the zinc finger domain of TIS11d." NAT.STRUCT.MOL.BIOL., 11, 257-264. doi: 10.1038/nsmb738. Structural basis for recognition of the mrna class ii au-rich element by the tandem zinc finger domain of tis11d. SNAP output
1rkj transcription-RNA NMR Johansson C, Finger LD, Trantirek L, Mueller TD, Kim S, Laird-Offringa IA, Feigon J (2004) "Solution structure of the complex formed by the two N-terminal RNA-binding domains of nucleolin and a pre-rRNA target." J.Mol.Biol., 337, 799-816. doi: 10.1016/j.jmb.2004.01.056. Solution structure of the complex formed by the two n-terminal RNA-binding domains of nucleolin and a pre-rrna target. SNAP output
1rlg structural protein-RNA X-ray (2.7 Å) Moore T, Zhang Y, Fenley MO, Li H (2004) "Molecular Basis of Box C/D RNA-Protein Interactions; Cocrystal Structure of Archaeal L7Ae and a Box C/D RNA." STRUCTURE, 12, 807-818. doi: 10.1016/j.str.2004.02.033. Molecular basis of box c-d RNA-protein interaction: co-crystal structure of the archaeal srnp intiation complex. SNAP output
1rmv virus-RNA fiber diffraction Wang H, Stubbs G (1993) "Molecular dynamics in refinement against fiber diffraction data." Acta Crystallogr.,Sect.A, 49, 504-513. doi: 10.1107/S0108767392011255. Ribgrass mosaic virus, fiber diffraction. SNAP output
1rpu RNA binding protein-RNA X-ray (2.5 Å) Vargason JM, Szittya G, Burgyan J, Hall TMT (2003) "Size selective recognition of siRNA by an RNA silencing suppressor." Cell(Cambridge,Mass.), 115, 799-811. doi: 10.1016/S0092-8674(03)00984-X. Crystal structure of cirv p19 bound to sirna. SNAP output
1ry1 translation cryo-EM (12.0 Å) Halic M, Becker T, Pool MR, Spahn CM, Grassucci RA, Frank J, Beckmann R (2004) "Structure of the signal recognition particle interacting with the elongation-arrested ribosome." Nature, 427, 808-814. doi: 10.1038/nature02342. Structure of the signal recognition particle interacting with the elongation-arrested ribosome. SNAP output
1s03 transcription-RNA X-ray (2.7 Å) Merianos HJ, Wang J, Moore PB (2004) "The structure of a ribosomal protein S8/spc operon mRNA complex." RNA, 10, 954-964. doi: 10.1261/rna.7030704. The structure of a ribosomal protein s8-spc operon mrna complex. SNAP output
1s72 ribosome X-ray (2.4 Å) Klein DJ, Moore PB, Steitz TA (2004) "The Roles of Ribosomal Proteins in the Structure, Assembly and Evolution of the Large Ribosomal Subunit." J.Mol.Biol., 340, 141-177. doi: 10.1016/j.jmb.2004.03.076. Refined crystal structure of the haloarcula marismortui large ribosomal subunit at 2.4 angstrom resolution. SNAP output
1sds protein-RNA complex X-ray (1.8 Å) Hamma T, Ferre-D'Amare A (2004) "Structure of Protein L7Ae Bound to a K-Turn Derived from an Archaeal Box H/ACA sRNA at 1.8 A Resolution." STRUCTURE, 12, 893-903. doi: 10.1016/j.str.2004.03.015. Structure of protein l7ae bound to a k-turn derived from an archaeal box h-aca srna. SNAP output
1ser ligase-RNA X-ray (2.9 Å) Biou V, Yaremchuk A, Tukalo M, Cusack S (1994) "The 2.9 A crystal structure of T. thermophilus seryl-tRNA synthetase complexed with tRNA(Ser)." Science, 263, 1404-1410. The 2.9 angstroms crystal structure of t. thermophilus seryl-trna synthetase complexed with trna ser. SNAP output
1si3 gene regulation-RNA X-ray (2.6 Å) Ma JB, Ye K, Patel DJ (2004) "Structural basis for overhang-specific small interfering RNA recognition by the PAZ domain." Nature, 429, 318-322. doi: 10.1038/nature02519. Crystal structure of the paz domain of human eif2c1 in complex with a 9-mer sirna-like duplex. SNAP output
1sj3 translation-RNA X-ray (2.2 Å) Ke A, Zhou K, Ding F, Cate JH, Doudna JA (2004) "A Conformational Switch controls hepatitis delta virus ribozyme catalysis." Nature, 429, 201-205. doi: 10.1038/nature02522. Hepatitis delta virus gemonic ribozyme precursor, with mg2+ bound. SNAP output
1sj4 translation-RNA X-ray (2.7 Å) Ke A, Zhou K, Ding F, Cate JH, Doudna JA (2004) "A Conformational Switch controls hepatitis delta virus ribozyme catalysis." Nature, 429, 201-205. doi: 10.1038/nature02522. Crystal structure of a c75u mutant hepatitis delta virus ribozyme precursor, in cu2+ solution. SNAP output
1sjf translation-RNA X-ray (2.75 Å) Ke A, Zhou K, Ding F, Cate JH, Doudna JA (2004) "A conformational switch controls hepatitis delta virus ribozyme catalysis." Nature, 429, 201-205. doi: 10.1038/nature02522. Crystal structure of the hepatitis delta virus gemonic ribozyme precursor, with c75u mutaion, in cobalt hexammine solution. SNAP output
1sm1 ribosome-antibiotic X-ray (3.42 Å) Harms JM, Schlunzen F, Fucini P, Bartels H, Yonath A (2004) "Alterations at the Peptidyl Transferase Centre of the Ribosome Induced by the Synergistic Action of the Streptogramins Dalfopristin and Quinupristin." Bmc Biol., 2, 4. doi: 10.1186/1741-7007-2-4. Complex of the large ribosomal subunit from deinococcus radiodurans with quinupristin and dalfopristin. SNAP output
1sz1 transferase-RNA X-ray (6.21 Å) Xiong Y, Steitz TA (2004) "Mechanism of transfer RNA maturation by CCA-adding enzyme without using an oligonucleotide template." Nature, 430, 640-645. doi: 10.1038/nature02711. Mechanism of cca-adding enzymes specificity revealed by crystal structures of ternary complexes. SNAP output
1t0k ribosome X-ray (3.24 Å) Chao JA, Williamson JR (2004) "Joint X-Ray and NMR Refinement of the Yeast L30e-mRNA Complex." Structure, 12, 1165-1176. doi: 10.1016/j.str.2004.04.023. Joint x-ray and NMR refinement of yeast l30e-mrna complex. SNAP output
1t2r nucleic acid binding protein-RNA NMR Lingel A, Simon B, Izaurralde E, Sattler M (2004) "Nucleic acid 3'-end recognition by the Argonaute2 PAZ domain." Nat.Struct.Mol.Biol., 11, 576-577. doi: 10.1038/nsmb777. Structural basis for 3' end recognition of nucleic acids by the drosophila argonaute 2 paz domain. SNAP output
1t4l RNA binding protein-RNA NMR Wu H, Henras A, Chanfreau G, Feigon J (2004) "Structural basis for recognition of the AGNN tetraloop RNA fold by the double-stranded RNA-binding domain of Rnt1p RNase III." Proc.Natl.Acad.Sci.USA, 101, 8307-8312. doi: 10.1073/pnas.0402627101. Solution structure of double-stranded RNA binding domain of s. cerevisiae rnase iii (rnt1p) in complex with the 5' terminal RNA hairpin of snr47 precursor. SNAP output
1tfw transferase-RNA X-ray (2.2 Å) Xiong Y, Steitz TA (2004) "Mechanism of transfer RNA maturation by CCA-adding enzyme without using an oligonucleotide template." Nature, 430, 640-645. doi: 10.1038/nature02711. How cca is added to the 3' end of immature trna without the use of an oligonucleotide template. SNAP output
1tfy transferase-RNA X-ray (3.2 Å) Xiong Y, Steitz TA (2004) "Mechanism of transfer RNA maturation by CCA-adding enzyme without using an oligonucleotide template." Nature, 430, 640-645. doi: 10.1038/nature02711. How cca is added to the 3' end of immature trna without the use of an oligonucleotide template. SNAP output
1ttt complex (elongation factor-trna) X-ray (2.7 Å) Nissen P, Kjeldgaard M, Thirup S, Polekhina G, Reshetnikova L, Clark BF, Nyborg J (1995) "Crystal structure of the ternary complex of Phe-tRNAPhe, EF-Tu, and a GTP analog." Science, 270, 1464-1472. Phe-trna, elongation factor ef-tu:gdpnp ternary complex. SNAP output
1u0b ligase-RNA X-ray (2.3 Å) Hauenstein S, Zhang CM, Hou YM, Perona JJ (2004) "Shape-selective RNA recognition by cysteinyl-tRNA synthetase." Nat.Struct.Mol.Biol., 11, 1134-1141. doi: 10.1038/nsmb849. Crystal structure of cysteinyl-trna synthetase binary complex with trnacys. SNAP output
1u63 transcription-RNA X-ray (3.4 Å) Nevskaya N, Tishchenko S, Gabdoulkhakov A, Nikonova E, Nikonov O, Nikulin A, Platonova O, Garber M, Nikonov S, Piendl W (2005) "Ribosomal protein L1 recognizes the same specific structural motif in its target sites on the autoregulatory mRNA and 23S rRNA." Nucleic Acids Res., 33, 478-485. doi: 10.1093/nar/gki194. The structure of a ribosomal protein l1-mrna complex. SNAP output
1u6b structural protein-RNA X-ray (3.1 Å) Adams PL, Stahley MR, Kosek AB, Wang J, Strobel SA (2004) "Crystal Structure of a Self-Splicing Group I Intron with Both Exons." Nature, 430, 45-50. doi: 10.1038/nature02642. Crystal structure of a self-splicing group i intron with both exons. SNAP output
1u6p viral protein-RNA NMR D'Souza V, Summers MF (2004) "Structural basis for packaging the dimeric genome of Moloney murine leukaemia virus." Nature, 431, 586-590. doi: 10.1038/nature02944. NMR structure of the mlv encapsidation signal bound to the nucleocapsid protein. SNAP output
1ull viral protein-RNA NMR Ye X, Gorin A, Ellington AD, Patel DJ (1996) "Deep penetration of an alpha-helix into a widened RNA major groove in the HIV-1 rev peptide-RNA aptamer complex." Nat.Struct.Biol., 3, 1026-1033. doi: 10.1038/nsb1296-1026. RNA aptamer complexed with hiv-1 rev peptide, NMR, 7 structures. SNAP output
1un6 RNA-binding protein-RNA X-ray (3.1 Å) Lu D, Searles MA, Klug A (2003) "Crystal Structure of a Zinc-Finger-RNA Complex Reveals Two Modes of Molecular Recognition." Nature, 426, 96. doi: 10.1038/NATURE02088. The crystal structure of a zinc finger - RNA complex reveals two modes of molecular recognition. SNAP output
1uon polymerase cryo-EM (7.6 Å) Zhang X, Walker SB, Chipman PR, Nibert ML, Baker TS (2003) "Reovirus Polymerase Lambda3 Localized by Cryo-Electron Microscopy of Virions at a Resolution of 7.6 A." Nat.Struct.Biol., 10, 1011. doi: 10.1038/NSB1009. Reovirus polymerase lambda-3 localized by electron cryomicroscopy of virions at 7.6-a resolution. SNAP output
1urn transcription-RNA X-ray (1.92 Å) Oubridge C, Ito N, Evans PR, Teo CH, Nagai K (1994) "Crystal structure at 1.92 A resolution of the RNA-binding domain of the U1A spliceosomal protein complexed with an RNA hairpin." Nature, 372, 432-438. doi: 10.1038/372432a0. U1a mutant-RNA complex + glycerol. SNAP output
1utd RNA binding protein X-ray (2.1 Å) Hopcroft NH, Manfredo A, Wendt AL, Brzozowski AM, Gollnick P, Antson AA (2004) "The Interaction of RNA with Trap: The Role of Triplet Repeats and Separating Spacer Nucleotides." J.Mol.Biol., 338, 43. doi: 10.1016/J.JMB.2004.02.038. The structure of the trp RNA-binding attenuation protein (trap) bound to a 63-nucleotide RNA molecule containing gaguuu repeats. SNAP output
1uvi polymerase X-ray (2.15 Å) Salgado PS, Makeyev EV, Butcher SJ, Bamford DH, Stuart DI, Grimes JM (2004) "The structural basis for RNA specificity and Ca2+ inhibition of an RNA-dependent RNA polymerase." Structure, 12, 307-316. doi: 10.1016/j.str.2004.01.012. The structural basis for RNA specificity and ca2 inhibition of an RNA-dependent RNA polymerase phi6p2 with 6nt RNA. SNAP output
1uvj polymerase X-ray (1.9 Å) Salgado PS, Makeyev EV, Butcher SJ, Bamford DH, Stuart DI, Grimes JM (2004) "The structural basis for RNA specificity and Ca2+ inhibition of an RNA-dependent RNA polymerase." Structure, 12, 307-316. doi: 10.1016/j.str.2004.01.012. The structural basis for RNA specificity and ca2 inhibition of an RNA-dependent RNA polymerase phi6p2 with 7nt RNA. SNAP output
1uvl transferase X-ray (2.0 Å) Salgado PS, Makeyev EV, Butcher SJ, Bamford DH, Stuart DI, Grimes JM (2004) "The structural basis for RNA specificity and Ca2+ inhibition of an RNA-dependent RNA polymerase." Structure, 12, 307-316. doi: 10.1016/j.str.2004.01.012. The structural basis for RNA specificity and ca2 inhibition of an RNA-dependent RNA polymerase phi6p2 with 5nt RNA. conformation b. SNAP output
1uvm transferase X-ray (2.0 Å) Salgado PS, Makeyev EV, Butcher SJ, Bamford DH, Stuart DI, Grimes JM (2004) "The structural basis for RNA specificity and Ca2+ inhibition of an RNA-dependent RNA polymerase." Structure, 12, 307-316. doi: 10.1016/j.str.2004.01.012. The structural basis for RNA specificity and ca2 inhibition of an RNA-dependent RNA polymerase phi6p2 with 5nt RNA conformation a. SNAP output
1uvn polymerase X-ray (3.0 Å) Salgado PS, Makeyev EV, Butcher SJ, Bamford DH, Stuart DI, Grimes JM (2004) "The structural basis for RNA specificity and Ca2+ inhibition of an RNA-dependent RNA polymerase." Structure, 12, 307-316. doi: 10.1016/j.str.2004.01.012. The structural basis for RNA specificity and ca2 inhibition of an RNA-dependent RNA polymerase phi6p2 ca2+ inhibition complex. SNAP output
1vbx translation-RNA X-ray (2.7 Å) Ke A, Zhou K, Ding F, Cate JHD, Doudna JA (2004) "A Conformational Switch controls hepatitis delta virus ribozyme catalysis." NATURE, 429, 201-205. doi: 10.1038/nature02522. Crystal structure of the hepatitis delta virus gemonic ribozyme precursor, with c75u mutaion, in edta solution. SNAP output
1vby translation-RNA X-ray (2.9 Å) Ke A, Zhou K, Ding F, Cate JHD, Doudna JA (2004) "A Conformational Switch controls hepatitis delta virus ribozyme catalysis." NATURE, 429, 201-205. doi: 10.1038/nature02522. Crystal structure of the hepatitis delta virus gemonic ribozyme precursor, with c75u mutaion, and mn2+ bound. SNAP output
1vbz translation-RNA X-ray (2.8 Å) Ke A, Zhou K, Ding F, Cate JHD, Doudna JA (2004) "A Conformational Switch controls hepatitis delta virus ribozyme catalysis." NATURE, 429, 201-205. doi: 10.1038/nature02522. Crystal structure of the hepatitis delta virus gemonic ribozyme precursor, with c75u mutaion, in ba2+ solution. SNAP output
1vc0 translation-RNA X-ray (2.5 Å) Ke A, Zhou K, Ding F, Cate JHD, Doudna JA (2004) "A Conformational Switch controls hepatitis delta virus ribozyme catalysis." NATURE, 429, 201-205. doi: 10.1038/nature02522. Crystal structure of the hepatitis delta virus gemonic ribozyme precursor, with c75u mutaion, in imidazole and sr2+ solution. SNAP output
1vc5 translation-RNA X-ray (3.4 Å) Ke A, Zhou K, Ding F, Cate JHD, Doudna JA (2004) "A Conformational Switch controls hepatitis delta virus ribozyme catalysis." NATURE, 429, 201-205. doi: 10.1038/nature02522. Crystal structure of the wild type hepatitis delta virus gemonic ribozyme precursor, in edta solution. SNAP output
1vc6 translation-RNA X-ray (2.8 Å) Ke A, Zhou K, Ding F, Cate JHD, Doudna JA (2004) "A Conformational Switch controls hepatitis delta virus ribozyme catalysis." NATURE, 429, 201-205. doi: 10.1038/nature02522. Crystal structure of the hepatitis delta virus gemonic ribozyme product with c75u mutaion, cleaved in imidazole and mg2+ solutions. SNAP output
1vfg transferase-RNA X-ray (2.8 Å) Tomita K, Fukai S, Ishitani R, Ueda T, Takeuchi N, Vassylyev DG, Nureki O (2004) "Structural basis for template-independent RNA polymerization." Nature, 430, 700-704. doi: 10.1038/nature02712. Crystal structure of trna nucleotidyltransferase complexed with a primer trna and an incoming atp analog. SNAP output
1vq4 ribosome X-ray (2.7 Å) Schmeing TM, Huang KS, Kitchen DE, Strobel SA, Steitz TA (2005) "Structural Insights into the Roles of Water and the 2' Hydroxyl of the P Site tRNA in the Peptidyl Transferase Reaction." Mol.Cell, 20, 437-448. doi: 10.1016/j.molcel.2005.09.006. The structure of the transition state analogue "daa" bound to the large ribosomal subunit of haloarcula marismortui. SNAP output
1vq6 ribosome X-ray (2.7 Å) Schmeing TM, Huang KS, Strobel SA, Steitz TA (2005) "An induced-fit mechanism to promote peptide bond formation and exclude hydrolysis of peptidyl-tRNA." Nature, 438, 520-524. doi: 10.1038/nature04152. The structure of c-hpmn and cca-phe-cap-bio bound to the large ribosomal subunit of haloarcula marismortui. SNAP output
1vq7 ribosome X-ray (2.5 Å) Schmeing TM, Huang KS, Strobel SA, Steitz TA (2005) "An induced-fit mechanism to promote peptide bond formation and exclude hydrolysis of peptidyl-tRNA." Nature, 438, 520-524. doi: 10.1038/nature04152. The structure of the transition state analogue "dca" bound to the large ribosomal subunit of haloarcula marismortui. SNAP output
1vq8 ribosome X-ray (2.2 Å) Schmeing TM, Huang KS, Kitchen DE, Strobel SA, Steitz TA (2005) "Structural Insights into the Roles of Water and the 2' Hydroxyl of the P Site tRNA in the Peptidyl Transferase Reaction." Mol.Cell, 20, 437-448. doi: 10.1016/j.molcel.2005.09.006. The structure of ccda-phe-cap-bio and the antibiotic sparsomycin bound to the large ribosomal subunit of haloarcula marismortui. SNAP output
1vq9 ribosome X-ray (2.4 Å) Schmeing TM, Huang KS, Kitchen DE, Strobel SA, Steitz TA (2005) "Structural Insights into the Roles of Water and the 2' Hydroxyl of the P Site tRNA in the Peptidyl Transferase Reaction." Mol.Cell, 20, 437-448. doi: 10.1016/j.molcel.2005.09.006. The structure of cca-phe-cap-bio and the antibiotic sparsomycin bound to the large ribosomal subunit of haloarcula marismortui. SNAP output
1vqk ribosome X-ray (2.3 Å) Schmeing TM, Huang KS, Kitchen DE, Strobel SA, Steitz TA (2005) "Structural Insights into the Roles of Water and the 2' Hydroxyl of the P Site tRNA in the Peptidyl Transferase Reaction." Mol.Cell, 20, 437-448. doi: 10.1016/j.molcel.2005.09.006. The structure of ccda-phe-cap-bio bound to the a site of the ribosomal subunit of haloarcula marismortui. SNAP output
1vql ribosome X-ray (2.3 Å) Schmeing TM, Huang KS, Kitchen DE, Strobel SA, Steitz TA (2005) "Structural Insights into the Roles of Water and the 2' Hydroxyl of the P Site tRNA in the Peptidyl Transferase Reaction." Mol.Cell, 20, 437-448. doi: 10.1016/j.molcel.2005.09.006. The structure of the transition state analogue "dcsn" bound to the large ribosomal subunit of haloarcula marismortui. SNAP output
1vqm ribosome X-ray (2.3 Å) Schmeing TM, Huang KS, Kitchen DE, Strobel SA, Steitz TA (2005) "Structural Insights into the Roles of Water and the 2' Hydroxyl of the P Site tRNA in the Peptidyl Transferase Reaction." Mol.Cell, 20, 437-448. doi: 10.1016/j.molcel.2005.09.006. The structure of the transition state analogue "dan" bound to the large ribosomal subunit of haloarcula marismortui. SNAP output
1vqn ribosome X-ray (2.4 Å) Schmeing TM, Huang KS, Strobel SA, Steitz TA (2005) "An induced-fit mechanism to promote peptide bond formation and exclude hydrolysis of peptidyl-tRNA." Nature, 438, 520-524. doi: 10.1038/nature04152. The structure of cc-hpmn and cca-phe-cap-bio bound to the large ribosomal subunit of haloarcula marismortui. SNAP output
1vqo ribosome X-ray (2.2 Å) Schmeing TM, Huang KS, Kitchen DE, Strobel SA, Steitz TA (2005) "Structural Insights into the Roles of Water and the 2' Hydroxyl of the P Site tRNA in the Peptidyl Transferase Reaction." Mol.Cell, 20, 437-448. doi: 10.1016/j.molcel.2005.09.006. The structure of ccpmn bound to the large ribosomal subunit haloarcula marismortui. SNAP output
1vtm virus-RNA fiber diffraction Pattanayek R, Stubbs G (1992) "Structure of the U2 strain of tobacco mosaic virus refined at 3.5 A resolution using X-ray fiber diffraction." J.Mol.Biol., 228, 516-528. doi: 10.1016/0022-2836(92)90839-C. Structure of the u2 strain of tobacco mosaic virus refined at 3.5 angstroms resolution using x-ray fiber diffraction. SNAP output
1w2b ribosome X-ray (3.5 Å) Ferbitz L, Maier T, Patzelt H, Bukau B, Deuerling E, Ban N (2004) "Trigger Factor in Complex with the Ribosome Forms a Molecular Cradle for Nascent Proteins." Nature, 431, 590. doi: 10.1038/NATURE02899. Trigger factor ribosome binding domain in complex with 50s. SNAP output
1wmq transcription-RNA X-ray (1.6 Å) Kumarevel T, Mizuno H, Kumar PK (2005) "Structural basis of HutP-mediated anti-termination and roles of the Mg2+ ion and L-histidine ligand." Nature, 434, 183-191. doi: 10.1038/nature03355. Structure of the hutp antitermination complex bound to a single stranded region of hut mrna. SNAP output
1wne transferase-RNA X-ray (3.0 Å) Ferrer-Orta C, Arias A, Perez-Luque R, Escarmis C, Domingo E, Verdaguer N (2004) "Structure of Foot-and-Mouth Disease Virus RNA-dependent RNA Polymerase and Its Complex with a Template-Primer RNA." J.Biol.Chem., 279, 47212-47221. doi: 10.1074/jbc.M405465200. Foot and mouth disease virus RNA-dependent RNA polymerase in complex with a template-primer RNA. SNAP output
1wpu transcription-RNA X-ray (1.48 Å) Kumarevel TS, Mizuno H, Kumar PKR "Structural basis for the HutP antitermination Complex:Role of divalent metal ions in allosteric activation." Crystal structure of the hutp antitermination complex bound to a single stranded region of hut mrna. SNAP output
1wrq transcription-RNA X-ray (2.2 Å) Kumarevel T, Mizuno H, Kumar PKR "Crystal Structure of the HutP-antitermination complex." Crystal structure of hutp-antitermination complex. SNAP output
1wsu translation-RNA X-ray (2.3 Å) Yoshizawa S, Rasubala L, Ose T, Kohda D, Fourmy D, Maenaka K (2005) "Structural basis for mRNA recognition by elongation factor SelB." Nat.Struct.Mol.Biol., 12, 198-203. doi: 10.1038/nsmb890. C-terminal domain of elongation factor selb complexed with secis RNA. SNAP output
1wwd viral protein-RNA NMR Dey A, York D, Smalls-Mantey A, Summers MF (2005) "Composition and sequence-dependent binding of RNA to the nucleocapsid protein of Moloney murine leukemia virus(,)." Biochemistry, 44, 3735-3744. doi: 10.1021/bi047639q. NMR structure determined for mlv nc complex with RNA sequence aacagu. SNAP output
1wwe viral protein-RNA NMR Dey A, York D, Smalls-Mantey A, Summers MF (2005) "Composition and sequence-dependent binding of RNA to the nucleocapsid protein of Moloney murine leukemia virus(,)." Biochemistry, 44, 3735-3744. doi: 10.1021/bi047639q. NMR structure determined for mlv nc complex with RNA sequence uuuugcu. SNAP output
1wwf viral protein-RNA NMR Dey A, York D, Smalls-Mantey A, Summers MF (2005) "Composition and sequence-dependent binding of RNA to the nucleocapsid protein of Moloney murine leukemia virus(,)." Biochemistry, 44, 3735-3744. doi: 10.1021/bi047639q. NMR structure determined for mlv nc complex with RNA sequence ccuccgu. SNAP output
1wwg viral protein-RNA NMR Dey A, York D, Smalls-Mantey A, Summers MF (2005) "Composition and sequence-dependent binding of RNA to the nucleocapsid protein of Moloney murine leukemia virus(,)." Biochemistry, 44, 3735-3744. doi: 10.1021/bi047639q. NMR structure determined for mlv nc complex with RNA sequence uaucug. SNAP output
1wz2 ligase-RNA X-ray (3.21 Å) Fukunaga R, Yokoyama S "The crystal structure of Leucyl-tRNA synthetase and tRNA(leucine) complex." The crystal structure of leucyl-trna synthetase and trna(leucine) complex. SNAP output
1xmo ribosome X-ray (3.25 Å) Murphy FV, Ramakrishnan V, Malkiewicz A, Agris PF (2004) "The role of modifications in codon discrimination by tRNA(Lys)(UUU)." Nat.Struct.Mol.Biol., 11, 1186-1191. doi: 10.1038/nsmb861. Crystal structure of mnm5u34t6a37-trnalysuuu complexed with aag-mrna in the decoding center. SNAP output
1xmq ribosome X-ray (3.0 Å) Murphy FV, Ramakrishnan V, Malkiewicz A, Agris PF (2004) "The role of modifications in codon discrimination by tRNA(Lys)(UUU)." Nat.Struct.Mol.Biol., 11, 1186-1191. doi: 10.1038/nsmb861. Crystal structure of t6a37-asllysuuu aaa-mrna bound to the decoding center. SNAP output
1xnq ribosome X-ray (3.05 Å) Murphy FV, Ramakrishnan V (2004) "Structure of a purine-purine wobble base pair in the decoding center of the ribosome." Nat.Struct.Mol.Biol., 11, 1251-1252. doi: 10.1038/nsmb866. Structure of an inosine-adenine wobble base pair complex in the context of the decoding center. SNAP output
1xnr ribosome X-ray (3.1 Å) Murphy FV, Ramakrishnan V (2004) "Structure of a purine-purine wobble base pair in the decoding center of the ribosome." Nat.Struct.Mol.Biol., 11, 1251-1252. doi: 10.1038/nsmb866. Crystal structure of an inosine-cytosine wobble base pair in the context of the decoding center. SNAP output
1xok viral protein-RNA X-ray (3.0 Å) Guogas LM, Filman DJ, Hogle JM, Gehrke L (2004) "Cofolding organizes alfalfa mosaic virus RNA and coat protein for replication." Science, 306, 2108-2111. doi: 10.1126/science.1103399. Crystal structure of alfalfa mosaic virus RNA 3'utr in complex with coat protein n terminal peptide. SNAP output
1xpo transcription-RNA X-ray (3.15 Å) Skordalakes E, Brogan AP, Park BS, Kohn H, Berger JM (2005) "Structural mechanism of inhibition of the rho transcription termination factor by the antibiotic bicyclomycin." Structure, 13, 99-109. doi: 10.1016/j.str.2004.10.013. Structural mechanism of inhibition of the rho transcription termination factor by the antibiotic bicyclomycin. SNAP output
1xpr transcription-RNA X-ray (3.15 Å) Skordalakes E, Brogan AP, Park BS, Kohn H, Berger JM (2005) "Structural mechanism of inhibition of the rho transcription termination factor by the antibiotic bicyclomycin." Structure, 13, 99-109. doi: 10.1016/j.str.2004.10.013. Structural mechanism of inhibition of the rho transcription termination factor by the antibiotic 5a-formylbicyclomycin (fb). SNAP output
1xpu transcription-RNA X-ray (3.05 Å) Skordalakes E, Brogan AP, Park BS, Kohn H, Berger JM (2005) "Structural mechanism of inhibition of the rho transcription termination factor by the antibiotic bicyclomycin." Structure, 13, 99-109. doi: 10.1016/j.str.2004.10.013. Structural mechanism of inhibition of the rho transcription termination factor by the antibiotic 5a-(3-formylphenylsulfanyl)-dihydrobicyclomycin (fpdb). SNAP output
1y39 structural protein-RNA X-ray (2.8 Å) Dunstan MS, Guhathakurta D, Draper DE, Conn GL (2005) "Coevolution of Protein and RNA Structures within a Highly Conserved Ribosomal Domain." Chem.Biol., 12, 201-206. doi: 10.1016/j.chembiol.2004.11.019. Co-evolution of protein and RNA structures within a highly conserved ribosomal domain. SNAP output
1y69 ribosome X-ray (3.33 Å) Wilson DN, Schluenzen F, Harms JM, Yoshida T, Ohkubo T, Albrecht R, Buerger J, Kobayashi Y, Fucini P (2005) "X-ray crystallography on ribosome recycling: mechanism of binding and action of RRF on the 50S ribosomal subunit." EMBO J., 24, 251-260. doi: 10.1038/sj.emboj.7600525. Rrf domain i in complex with the 50s ribosomal subunit from deinococcus radiodurans. SNAP output
1yhq ribosome X-ray (2.4 Å) Tu D, Blaha G, Moore PB, Steitz TA (2005) "Structures of MLSBK antibiotics bound to mutated large ribosomal subunits provide a structural explanation for resistance." Cell(Cambridge,Mass.), 121, 257-270. doi: 10.1016/j.cell.2005.02.005. Crystal structure of azithromycin bound to the g2099a mutant 50s ribosomal subunit of haloarcula marismortui. SNAP output
1yi2 ribosome X-ray (2.65 Å) Tu D, Blaha G, Moore PB, Steitz TA (2005) "Structures of MLSBK antibiotics bound to mutated large ribosomal subunits provide a structural explanation for resistance." Cell(Cambridge,Mass.), 121, 257-270. doi: 10.1016/j.cell.2005.02.005. Crystal structure of erythromycin bound to the g2099a mutant 50s ribosomal subunit of haloarcula marismortui. SNAP output
1yij ribosome X-ray (2.6 Å) Tu D, Blaha G, Moore PB, Steitz TA (2005) "Structures of MLSBK antibiotics bound to mutated large ribosomal subunits provide a structural explanation for resistance." Cell(Cambridge,Mass.), 121, 257-270. doi: 10.1016/j.cell.2005.02.005. Crystal structure of telithromycin bound to the g2099a mutant 50s ribosomal subunit of haloarcula marismortui. SNAP output
1yit ribosome-antibiotic X-ray (2.8 Å) TU D, Blaha G, Moore PB, Steitz TA (2005) "Structures of Mlsbk Antibiotics Bound to Mutated Large Ribosomal Subunits Provide a Structural Explanation for Resistance." Cell(Cambridge,Mass.), 121, 257. doi: 10.1016/J.CELL.2005.02.005. Crystal structure of virginiamycin m and s bound to the 50s ribosomal subunit of haloarcula marismortui. SNAP output
1yj9 ribosome X-ray (2.8 Å) Tu D, Blaha G, Moore PB, Steitz TA (2005) "Structures of MLSBK antibiotics bound to mutated large ribosomal subunits provide a structural explanation for resistance." Cell(Cambridge,Mass.), 121, 257-270. doi: 10.1016/j.cell.2005.02.005. Crystal structure of the mutant 50s ribosomal subunit of haloarcula marismortui containing a three residue deletion in l22. SNAP output
1yjn ribosome X-ray (3.0 Å) Tu D, Blaha G, Moore PB, Steitz TA (2005) "Structures of MLSBK antibiotics bound to mutated large ribosomal subunits provide a structural explanation for resistance." Cell(Cambridge,Mass.), 121, 257-270. doi: 10.1016/j.cell.2005.02.005. Crystal structure of clindamycin bound to the g2099a mutant 50s ribosomal subunit of haloarcula marismortui. SNAP output
1yjw ribosome-antibiotic X-ray (2.9 Å) Tu D, Blaha G, Moore PB, Steitz TA (2005) "Structures of Mlsbk Antibiotics Bound to Mutated Large Ribosomal Subunits Provide a Structural Explanation for Resistance." Cell(Cambridge,Mass.), 121, 257. doi: 10.1016/J.CELL.2005.02.005. Crystal structure of quinupristin bound to the g2099a mutant 50s ribosomal subunit of haloarcula marismortui. SNAP output
1ysh structural protein-RNA cryo-EM (9.5 Å) Halic M, Becker T, Frank J, Spahn CM, Beckmann R (2005) "Localization and dynamic behavior of ribosomal protein L30e." Nat.Struct.Mol.Biol., 12, 467-468. doi: 10.1038/nsmb933. Localization and dynamic behavior of ribosomal protein l30e. SNAP output
1ytu RNA binding protein-RNA X-ray (2.5 Å) Ma JB, Yuan YR, Meister G, Pei Y, Tuschl T, Patel DJ (2005) "Structural basis for 5'-end-specific recognition of guide RNA by the A. fulgidus Piwi protein." Nature, 434, 666-670. doi: 10.1038/nature03514. Structural basis for 5'-end-specific recognition of the guide RNA strand by the a. fulgidus piwi protein. SNAP output
1yty transcription-RNA X-ray (2.29 Å) Teplova M, Yuan YR, Phan AT, Malinina L, Ilin S, Teplov A, Patel DJ (2006) "Structural Basis for Recognition and Sequestration of UUU(OH) 3' Temini of Nascent RNA Polymerase III Transcripts by La, a Rheumatic Disease Autoantigen." Mol.Cell, 21, 75-85. doi: 10.1016/j.molcel.2005.10.027. Structural basis for recognition of uuuoh 3'-terminii of nascent RNA pol iii transcripts by la autoantigen. SNAP output
1yvp RNA binding protein-RNA X-ray (2.2 Å) Stein AJ, Fuchs G, Fu C, Wolin SL, Reinisch KM (2005) "Structural Insights into RNA Quality Control: The Ro Autoantigen Binds Misfolded RNAs via Its Central Cavity." Cell(Cambridge,Mass.), 121, 529-539. doi: 10.1016/j.cell.2005.03.009. Ro autoantigen complexed with rnas. SNAP output
1yyk hydrolase-RNA X-ray (2.5 Å) Gan J, Tropea JE, Austin BP, Court DL, Waugh DS, Ji X (2005) "Intermediate states of ribonuclease III in complex with double-stranded RNA." Structure, 13, 1435-1442. doi: 10.1016/j.str.2005.06.014. Crystal structure of rnase iii from aquifex aeolicus complexed with double-stranded RNA at 2.5-angstrom resolution. SNAP output
1yyo hydrolase-RNA X-ray (2.9 Å) Gan J, Tropea JE, Austin BP, Court DL, Waugh DS, Ji X (2005) "Intermediate states of ribonuclease III in complex with double-stranded RNA." Structure, 13, 1435-1442. doi: 10.1016/j.str.2005.06.014. Crystal structure of rnase iii mutant e110k from aquifex aeolicus complexed with double-stranded RNA at 2.9-angstrom resolution. SNAP output
1yyw hydrolase-RNA X-ray (2.8 Å) Gan J, Tropea JE, Austin BP, Court DL, Waugh DS, Ji X (2005) "Intermediate states of ribonuclease III in complex with double-stranded RNA." Structure, 13, 1435-1442. doi: 10.1016/j.str.2005.06.014. Crystal structure of rnase iii from aquifex aeolicus complexed with double stranded RNA at 2.8-angstrom resolution. SNAP output
1yz9 hydrolase-RNA X-ray (2.1 Å) Gan J, Tropea JE, Austin BP, Court DL, Waugh DS, Ji X (2005) "Intermediate states of ribonuclease III in complex with double-stranded RNA." Structure, 13, 1435-1442. doi: 10.1016/j.str.2005.06.014. Crystal structure of rnase iii mutant e110q from aquifex aeolicus complexed with double stranded RNA at 2.1-angstrom resolution. SNAP output
1zbh hydrolase-RNA X-ray (3.0 Å) Cheng Y, Patel DJ "Structural basis for 3'-end specific recognition of histone mRNA stem-loop by 3'-exonuclease, a human nuclease that also targets siRNA." 3'-end specific recognition of histone mrna stem-loop by 3'-exonuclease. SNAP output
1zbn RNA binding protein-RNA NMR Calabro V, Daugherty MD, Frankel AD (2005) "A single intermolecular contact mediates intramolecular stabilization of both RNA and protein." Proc.Natl.Acad.Sci.Usa, 102, 6849-6854. doi: 10.1073/pnas.0409282102. Solution structure of biv tar hairpin complexed to jdv tat arginine-rich motif. SNAP output
1zdh virus-RNA X-ray (2.7 Å) Valegard K, Murray JB, Stonehouse NJ, van den Worm S, Stockley PG, Liljas L (1997) "The three-dimensional structures of two complexes between recombinant MS2 capsids and RNA operator fragments reveal sequence-specific protein-RNA interactions." J.Mol.Biol., 270, 724-738. doi: 10.1006/jmbi.1997.1144. Ms2 coat protein-RNA complex. SNAP output
1zdi virus-RNA X-ray (2.7 Å) Valegard K, Murray JB, Stonehouse NJ, van den Worm S, Stockley PG, Liljas L (1997) "The three-dimensional structures of two complexes between recombinant MS2 capsids and RNA operator fragments reveal sequence-specific protein-RNA interactions." J.Mol.Biol., 270, 724-738. doi: 10.1006/jmbi.1997.1144. RNA bacteriophage ms2 coat protein-RNA complex. SNAP output
1zdj virus-RNA X-ray (2.9 Å) Grahn E, Stonehouse NJ, Murray JB, van den Worm S, Valegard K, Fridborg K, Stockley PG, Liljas L (1999) "Crystallographic studies of RNA hairpins in complexes with recombinant MS2 capsids: implications for binding requirements." RNA, 5, 131-138. doi: 10.1017/S1355838299981645. Structure of bacteriophage coat protein-loop RNA complex. SNAP output
1zdk virus-RNA X-ray (2.86 Å) Grahn E, Stonehouse NJ, Murray JB, van den Worm S, Valegard K, Fridborg K, Stockley PG, Liljas L (1999) "Crystallographic studies of RNA hairpins in complexes with recombinant MS2 capsids: implications for binding requirements." RNA, 5, 131-138. doi: 10.1017/S1355838299981645. Structure of bacteriophage coat protein-loop RNA complex. SNAP output
1ze2 lyase-RNA X-ray (3.0 Å) Phannachet K, Huang RH (2004) "Conformational change of pseudouridine 55 synthase upon its association with RNA substrate." Nucleic Acids Res., 32, 1422-1429. doi: 10.1093/nar/gkh287. Conformational change of pseudouridine 55 synthase upon its association with RNA substrate. SNAP output
1zh5 transcription-RNA X-ray (1.85 Å) Teplova M, Yuan YR, Phan AT, Malinina L, Ilin S, Teplov A, Patel DJ (2006) "Structural Basis for Recognition and Sequestration of UUU(OH) 3' Temini of Nascent RNA Polymerase III Transcripts by La, a Rheumatic Disease Autoantigen." Mol.Cell, 21, 75-85. doi: 10.1016/j.molcel.2005.10.027. Structural basis for recognition of uuuoh 3'-terminii of nascent RNA pol iii transcripts by la autoantigen. SNAP output
1zho structural protein-RNA X-ray (2.6 Å) Nevskaya N, Tishchenko S, Volchkov S, Kljashtorny V, Nikonova E, Nikonov O, Nikulin A, Kohrer C, Piendl W, Zimmermann R, Stockley P, Garber M, Nikonov S (2006) "New insights into the interaction of ribosomal protein L1 with RNA." J.Mol.Biol., 355, 747-759. doi: 10.1016/j.jmb.2005.10.084. The structure of a ribosomal protein l1 in complex with mrna. SNAP output
1zjw ligase-RNA X-ray (2.5 Å) Gruic-Sovulj I, Uter N, Bullock T, Perona JJ (2005) "tRNA-dependent Aminoacyl-adenylate Hydrolysis by a Nonediting Class I Aminoacyl-tRNA Synthetase." J.Biol.Chem., 280, 23978-23986. doi: 10.1074/jbc.M414260200. Glutaminyl-trna synthetase complexed to glutamine and 2'deoxy a76 glutamine trna. SNAP output
1zl3 lyase-RNA X-ray (2.8 Å) Hoang C, Hamilton CS, Mueller EG, Ferre-D'Amare AR (2005) "Precursor complex structure of pseudouridine synthase TruB suggests coupling of active site perturbations to an RNA-sequestering peripheral protein domain." Protein Sci., 14, 2201-2206. doi: 10.1110/ps.051493605. Coupling of active site motions and RNA binding. SNAP output
1zo1 translation-RNA cryo-EM (13.8 Å) Allen GS, Zavialov A, Gursky R, Ehrenberg M, Frank J (2005) "The Cryo-EM Structure of a Translation Initiation Complex from Escherichia coli." Cell(Cambridge,Mass.), 121, 703-712. doi: 10.1016/j.cell.2005.03.023. If2, if1, and trna fitted to cryo-EM data of e. coli 70s initiation complex. SNAP output
1zse RNA-virus-viral protein X-ray (3.0 Å) Horn WT, Tars K, Grahn E, Helgstrand C, Baron AJ, Lago H, Adams CJ, Peabody DS, Phillips SEV, Stonehouse NJ, Liljas L, Stockley PG (2006) "Structural Basis of RNA Binding Discrimination between Bacteriophages Qbeta and MS2." Structure, 14, 487-495. doi: 10.1016/j.str.2005.12.006. RNA stemloop from bacteriophage qbeta complexed with an n87s mutant ms2 capsid. SNAP output
1zzn structural protein-RNA X-ray (3.37 Å) Stahley MR, Strobel SA (2005) "Structural evidence for a two-metal-ion mechanism of group I intron splicing." Science, 309, 1587-1590. doi: 10.1126/science.1114994. Crystal structure of a group i intron-two exon complex that includes all catalytic metal ion ligands.. SNAP output
2a1r hydrolase-RNA X-ray (2.6 Å) Wu M, Reuter M, Lilie H, Liu Y, Wahle E, Song H (2005) "Structural insight into poly(A) binding and catalytic mechanism of human PARN." Embo J., 24, 4082-4093. doi: 10.1038/sj.emboj.7600869. Crystal structure of parn nuclease domain. SNAP output
2a8v protein-RNA X-ray (2.4 Å) Bogden CE, Fass D, Bergman N, Nichols MD, Berger JM (1999) "The structural basis for terminator recognition by the Rho transcription termination factor." Mol.Cell, 3, 487-493. doi: 10.1016/S1097-2765(00)80476-1. Rho transcription termination factor-RNA complex. SNAP output
2a9x RNA binding protein-RNA NMR Leeper TC, Athanassiou Z, Dias RL, Robinson JA, Varani G (2005) "TAR RNA recognition by a cyclic peptidomimetic of Tat protein." Biochemistry, 44, 12362-12372. doi: 10.1021/bi0510532. Tar RNA recognition by a cyclic peptidomimetic of tat protein. SNAP output
2ab4 isomerase-RNA X-ray (2.4 Å) Phannachet K, Elias Y, Huang RH (2005) "Dissecting the roles of a strictly conserved tyrosine in substrate recognition and catalysis by pseudouridine 55 synthase." Biochemistry, 44, 15488-15494. doi: 10.1021/bi050961w. Dissecting the roles of a strictly conserved tyrosine in substrate recognition and catalysis by pseudouridine 55 synthase. SNAP output
2ad9 RNA binding protein-RNA NMR Oberstrass FC, Auweter SD, Erat M, Hargous Y, Henning A, Wenter P, Reymond L, Amir-Ahmady B, Pitsch S, Black DL, Allain FHT (2005) "Structure of PTB bound to RNA: specific binding and implications for splicing regulation." Science, 309, 2054-2057. doi: 10.1126/science.1114066. Solution structure of polypyrimidine tract binding protein rbd1 complexed with cucucu RNA. SNAP output
2adb RNA binding protein-RNA NMR Oberstrass FC, Auweter SD, Erat M, Hargous Y, Henning A, Wenter P, Reymond L, Amir-Ahmady B, Pitsch S, Black DL, Allain FHT (2005) "Structure of PTB bound to RNA: specific binding and implications for splicing regulation." Science, 309, 2054-2057. doi: 10.1126/science.1114066. Solution structure of polypyrimidine tract binding protein rbd2 complexed with cucucu RNA. SNAP output
2adc RNA binding protein-RNA NMR Oberstrass FC, Auweter SD, Erat M, Hargous Y, Henning A, Wenter P, Reymond L, Amir-Ahmady B, Pitsch S, Black DL, Allain FHT (2005) "Structure of PTB bound to RNA: specific binding and implications for splicing regulation." Science, 309, 2054-2057. doi: 10.1126/science.1114066. Solution structure of polypyrimidine tract binding protein rbd34 complexed with cucucu RNA. SNAP output
2ake ligase-RNA X-ray (3.1 Å) Shen N, Guo L, Yang B, Jin Y, Ding J (2006) "Structure of human tryptophanyl-tRNA synthetase in complex with tRNA(Trp) reveals the molecular basis of tRNA recognition and specificity." Nucleic Acids Res., 34, 3246-3258. doi: 10.1093/nar/gkl441. Structure of human tryptophanyl-trna synthetase in complex with trna(trp). SNAP output
2ann RNA-binding protein-RNA X-ray (2.3 Å) Teplova M, Malinina L, Darnell JC, Song J, Lu M, Abagyan R, Musunuru K, Teplov A, Burley SK, Darnell RB, Patel DJ (2011) "Protein-RNA and protein-protein recognition by dual KH1/2 domains of the neuronal splicing factor Nova-1." Structure, 19, 930-944. doi: 10.1016/j.str.2011.05.002. Crystal structure (i) of nova-1 kh1-kh2 domain tandem with 25 nt RNA hairpin. SNAP output
2anr RNA-binding protein-RNA X-ray (1.94 Å) Teplova M, Malinina L, Darnell JC, Song J, Lu M, Abagyan R, Musunuru K, Teplov A, Burley SK, Darnell RB, Patel DJ (2011) "Protein-RNA and protein-protein recognition by dual KH1/2 domains of the neuronal splicing factor Nova-1." Structure, 19, 930-944. doi: 10.1016/j.str.2011.05.002. Crystal structure (ii) of nova-1 kh1-kh2 domain tandem with 25nt RNA hairpin. SNAP output
2asb transcription-RNA X-ray (1.5 Å) Beuth B, Pennell S, Arnvig KB, Martin SR, Taylor IA (2005) "Structure of a Mycobacterium tuberculosis NusA-RNA complex." Embo J., 24, 3576-3587. doi: 10.1038/sj.emboj.7600829. Structure of a mycobacterium tuberculosis nusa-RNA complex. SNAP output
2atw transcription-RNA X-ray (2.25 Å) Beuth B, Pennell S, Arnvig KB, Martin SR, Taylor IA (2005) "Structure of a Mycobacterium tuberculosis NusA-RNA complex." Embo J., 24, 3576-3587. doi: 10.1038/sj.emboj.7600829. Structure of a mycobacterium tuberculosis nusa-RNA complex. SNAP output
2az0 viral protein-RNA X-ray (2.6 Å) Chao JA, Lee JH, Chapados BR, Debler EW, Schneemann A, Williamson JR (2005) "Dual modes of RNA-silencing suppression by Flock House virus protein B2." Nat.Struct.Mol.Biol., 12, 952-957. doi: 10.1038/nsmb1005. Flock house virus b2-dsrna complex (p212121). SNAP output
2az2 viral protein-RNA X-ray (2.6 Å) Chao JA, Lee JH, Chapados BR, Debler EW, Schneemann A, Williamson JR (2005) "Dual modes of RNA-silencing suppression by Flock House virus protein B2." Nat.Struct.Mol.Biol., 12, 952-957. doi: 10.1038/nsmb1005. Flock house virus b2-dsrna complex (p4122). SNAP output
2azx ligase-RNA X-ray (2.8 Å) Yang XL, Otero FJ, Ewalt KL, Liu J, Swairjo MA, Kohrer C, RajBhandary UL, Skene RJ, McRee DE, Schimmel P (2006) "Two conformations of a crystalline human tRNA synthetase-tRNA complex: implications for protein synthesis." Embo J., 25, 2919-2929. doi: 10.1038/sj.emboj.7601154. Charged and uncharged trnas adopt distinct conformations when complexed with human tryptophanyl-trna synthetase. SNAP output
2b2d virus-viral protein-RNA X-ray (2.9 Å) Horn WT, Tars K, Grahn E, Helgstrand C, Baron AJ, Lago H, Adams CJ, Peabody DS, Phillips SEV, Stonehouse NJ, Liljas L, Stockley PG (2006) "Structural basis of RNA binding discrimination between bacteriophages Qbeta and MS2." Structure, 14, 487-495. doi: 10.1016/j.str.2005.12.006. RNA stemloop operator from bacteriophage qbeta complexed with an n87s,e89k mutant ms2 capsid. SNAP output
2b2e virus-viral protein-RNA X-ray (3.15 Å) Horn WT, Tars K, Grahn E, Helgstrand C, Baron AJ, Lago H, Adams CJ, Peabody DS, Phillips SEV, Stonehouse NJ, Liljas L, Stockley PG (2006) "Structural basis of RNA binding discrimination between bacteriophages Qbeta and MS2." Structure, 14, 487-495. doi: 10.1016/j.str.2005.12.006. RNA stemloop from bacteriophage ms2 complexed with an n87s,e89k mutant ms2 capsid. SNAP output
2b2g virus-viral protein-RNA X-ray (3.02 Å) Horn WT, Tars K, Grahn E, Helgstrand C, Baron AJ, Lago H, Adams CJ, Peabody DS, Phillips SEV, Stonehouse NJ, Liljas L, Stockley PG (2006) "Structural basis of RNA binding discrimination between bacteriophages Qbeta and MS2." Structure, 14, 487-495. doi: 10.1016/j.str.2005.12.006. Ms2 wild-type RNA stemloop complexed with an n87s mutant ms2 capsid. SNAP output
2b3j hydrolase-RNA X-ray (2.0 Å) Losey HC, Ruthenburg AJ, Verdine GL (2006) "Crystal structure of Staphylococcus aureus tRNA adenosine deaminase TadA in complex with RNA." Nat.Struct.Mol.Biol., 13, 153-159. doi: 10.1038/nsmb1047. Crystal structure of staphylococcus aureus trna adenosine deaminase, tada, in complex with RNA. SNAP output
2b63 transferase-RNA X-ray (3.8 Å) Kettenberger H, Eisenfuehr A, Brueckner F, Theis M, Famulok M, Cramer P (2006) "Structure of an RNA polymerase II-RNA inhibitor complex elucidates transcription regulation by noncoding RNAs." Nat.Struct.Mol.Biol., 13, 44-48. doi: 10.1038/nsmb1032. Complete RNA polymerase ii-RNA inhibitor complex. SNAP output
2b6g RNA binding protein NMR Johnson PE, Donaldson LW (2006) "RNA recognition by the Vts1p SAM domain." Nat.Struct.Mol.Biol., 13, 177-178. doi: 10.1038/nsmb1039. RNA recognition by the vts1 sam domain. SNAP output
2bbv virus-RNA X-ray (2.8 Å) Wery JP, Reddy VS, Hosur MV, Johnson JE (1994) "The refined three-dimensional structure of an insect virus at 2.8 A resolution." J.Mol.Biol., 235, 565-586. doi: 10.1006/jmbi.1994.1014. The refined three-dimensional structure of an insect virus at 2.8 angstroms resolution. SNAP output
2bgg RNA-binding protein-RNA X-ray (2.2 Å) Parker JS, Roe SM, Barford D (2005) "Structural Insights Into Mrna Recognition from a Piwi Domain-Sirna Guide Complex." Nature, 434, 663. doi: 10.1038/NATURE03462. The structure of a piwi protein from archaeoglobus fulgidus complexed with a 16nt sirna duplex.. SNAP output
2bh2 transferase X-ray (2.15 Å) Lee TT, Agarwalla S, Stroud RM (2005) "A Unique RNA Fold in the Ruma-RNA-Cofactor Ternary Complex Contributes to Substrate Selectivity and Enzymatic Function." Cell(Cambridge,Mass.), 120, 599. doi: 10.1016/J.CELL.2004.12.037. Crystal structure of e. coli 5-methyluridine methyltransferase ruma in complex with ribosomal RNA substrate and s-adenosylhomocysteine.. SNAP output
2bny virus X-ray (3.0 Å) Horn WT, Tars K, Grahn E, Helgstrand C, Baron AJ, Lago H, Adams CJ, Peabody DS, Phillips SEV, Stonehouse NJ, Liljas L, Stockley PG (2006) "Structural Basis of RNA Binding Discrimination between Bacteriophages Qbeta and MS2." Structure, 14, 487. doi: 10.1016/J.STR.2005.12.006. Ms2 (n87a mutant) - RNA hairpin complex. SNAP output
2bq5 virus-RNA X-ray (2.91 Å) Horn WT, Tars K, Grahn E, Helgstrand C, Baron AJ, Lago H, Adams CJ, Peabody DS, Phillips SEV, Stonehouse NJ, Liljas L, Stockley PG (2006) "Structural Basis of RNA Binding Discrimination between Bacteriophages Qbeta and MS2." Structure, 14, 487. doi: 10.1016/J.STR.2005.12.006. Ms2 (n87ae89k mutant) - RNA hairpin complex. SNAP output
2bs0 virus-RNA X-ray (2.45 Å) Horn WT, Tars K, Grahn E, Helgstrand C, Baron AJ, Lago H, Adams CJ, Peabody DS, Phillips SEV, Stonehouse NJ, Liljas L, Stockley PG (2006) "Structural Basis of RNA Binding Discrimination between Bacteriophages Qbeta and MS2." Structure, 14, 487. doi: 10.1016/J.STR.2005.12.006. Ms2 (n87ae89k mutant) - variant qbeta RNA hairpin complex. SNAP output
2bs1 virus-RNA X-ray (2.8 Å) Horn WT, Tars K, Grahn E, Helgstrand C, Baron AJ, Lago H, Adams CJ, Peabody DS, Phillips SEV, Stonehouse NJ, Liljas L, Stockley PG (2006) "Structural Basis of RNA Binding Discrimination between Bacteriophages Qbeta and MS2." Structure, 14, 487. doi: 10.1016/J.STR.2005.12.006. Ms2 (n87ae89k mutant) - qbeta RNA hairpin complex. SNAP output
2bte ligase X-ray (2.9 Å) Tukalo M, Yaremchuk A, Fukunaga R, Yokoyama S, Cusack S (2005) "The Crystal Structure of Leucyl-tRNA Synthetase Complexed with tRNA(Leu) in the Post-Transfer- Editing Conformation." Nat.Struct.Mol.Biol., 12, 923. doi: 10.1038/NSMB986. Thermus thermophilus leucyl-trna synthetase complexed with a trnaleu transcript in the post-editing conformation and a post- transfer editing substrate analogue. SNAP output
2bu1 virus-RNA X-ray (2.2 Å) Grahn E, Moss T, Helgstrand C, Fridborg K, Sundaram M, Tars K, Lago H, Stonehouse NJ, Davis DR, Stockley PG, Liljas L (2001) "Structural basis of pyrimidine specificity in the MS2 RNA hairpin-coat-protein complex." Rna, 7, 1616-1627. Ms2-RNA hairpin (5bru -5) complex. SNAP output
2bx2 hydrolase X-ray (2.85 Å) Callaghan AJ, Marcaida MJ, Stead JA, Mcdowall KJ, Scott WG, Luisi BF (2005) "Structure of E. Coli Rnase E Catalytic Domain and Implications for RNA Processing and Turnover." Nature, 437, 1187. doi: 10.1038/NATURE04084. Catalytic domain of e. coli rnase e. SNAP output
2byt synthetase X-ray (3.3 Å) Tukalo M, Yaremchuk A, Fukunaga R, Yokoyama S, Cusack S (2005) "The Crystal Structure of Leucyl-tRNA Synthetase Complexed with tRNA(Leu) in the Post-Transfer-Editing Conformation." Nat.Struct.Mol.Biol., 12, 923. doi: 10.1038/NSMB986. Thermus thermophilus leucyl-trna synthetase complexed with a trnaleu transcript in the post-editing conformation. SNAP output
2c06 toxin NMR Kamphuis MB, Bonvin AMJJ, Monti MC, Lemonnier M, Munoz-Gomez A, Van Den Heuvel RHH, Diaz-Orejas R, Boelens R (2006) "Model for RNA Binding and the Catalytic Site of the Rnase Kid of the Bacterial Pard Toxin-Antitoxin System." J.Mol.Biol., 357, 115. doi: 10.1016/J.JMB.2005.12.033. NMR-based model of the complex of the toxin kid and a 5-nucleotide substrate RNA fragment (auaca). SNAP output
2c0b hydrolase X-ray (3.18 Å) Callaghan AJ, Marcaida MJ, Stead JA, Mcdowall KJ, Scott WG, Luisi BF (2005) "Structure of E. Coli Rnase E Catalytic Domain and Implications for RNA Processing and Turnover." Nature, 437, 1187. doi: 10.1038/NATURE04084. Catalytic domain of e. coli rnase e in complex with 13-mer RNA. SNAP output
2c4q virus-RNA X-ray (2.38 Å) Grahn E, Moss T, Helgstrand C, Fridborg K, Sundaram M, Tars K, Lago H, Stonehouse NJ, Davis DR, Stockley PG, Liljas L (2001) "Structural basis of pyrimidine specificity in the MS2 RNA hairpin-coat-protein complex." Rna, 7, 1616-1627. Ms2-RNA hairpin (2one -5) complex. SNAP output
2c4r hydrolase X-ray (3.6 Å) Callaghan AJ, Marcaida MJ, Stead JA, McDowall KJ, Scott WG, Luisi BF (2005) "Structure of E. Coli Rnase E Catalytic Domain and Implications for RNA Processing and Turnover." Nature, 437, 1187. doi: 10.1038/NATURE04084. Catalytic domain of e. coli rnase e. SNAP output
2c4y virus-RNA X-ray (2.68 Å) Grahn E, Moss T, Helgstrand C, Fridborg K, Sundaram M, Tars K, Lago H, Stonehouse NJ, Davis DR, Stockley PG, Liljas L (2001) "Structural basis of pyrimidine specificity in the MS2 RNA hairpin-coat-protein complex." Rna, 7, 1616-1627. Ms2-RNA hairpin (2thiouracil-5) complex. SNAP output
2c4z virus-RNA X-ray (2.6 Å) Grahn E, Moss T, Helgstrand C, Fridborg K, Sundaram M, Tars K, Lago H, Stonehouse NJ, Davis DR, Stockley PG, Liljas L (2001) "Structural basis of pyrimidine specificity in the MS2 RNA hairpin-coat-protein complex." Rna, 7, 1616-1627. Ms2-RNA hairpin (2su -5-6) complex. SNAP output
2c50 virus-RNA X-ray (2.65 Å) Grahn E, Moss T, Helgstrand C, Fridborg K, Sundaram M, Tars K, Lago H, Stonehouse NJ, Davis DR, Stockley PG, Liljas L (2001) "Structural basis of pyrimidine specificity in the MS2 RNA hairpin-coat-protein complex." Rna, 7, 1616-1627. Ms2-RNA hairpin (a -5) complex. SNAP output
2c51 virus-RNA X-ray (2.8 Å) Grahn E, Moss T, Helgstrand C, Fridborg K, Sundaram M, Tars K, Lago H, Stonehouse NJ, Davis DR, Stockley PG, Liljas L (2001) "Structural basis of pyrimidine specificity in the MS2 RNA hairpin-coat-protein complex." Rna, 7, 1616-1627. Ms2-RNA hairpin (g -5) complex. SNAP output
2cjk RNA binding protein NMR Perez-Canadillas JM (2006) "Grabbing the message: structural basis of mRNA 3'UTR recognition by Hrp1." EMBO J., 25, 3167-3178. doi: 10.1038/sj.emboj.7601190. Structure of the RNA binding domain of hrp1 in complex with RNA. SNAP output
2csx ligase-RNA X-ray (2.7 Å) Nakanishi K, Ogiso Y, Nakama T, Fukai S, Nureki O (2005) "Structural basis for anticodon recognition by methionyl-tRNA synthetase." Nat.Struct.Mol.Biol., 12, 931-932. doi: 10.1038/nsmb988. Crystal structure of aquifex aeolicus methionyl-trna synthetase complexed with trna(met). SNAP output
2ct8 ligase-RNA X-ray (2.7 Å) Nakanishi K, Ogiso Y, Nakama T, Fukai S, Nureki O (2005) "Structural basis for anticodon recognition by methionyl-tRNA synthetase." Nat.Struct.Mol.Biol., 12, 931-932. doi: 10.1038/nsmb988. Crystal structure of aquifex aeolicus methionyl-trna synthetase complexed with trna(met) and methionyl-adenylate anologue. SNAP output
2cv0 ligase-RNA X-ray (2.4 Å) Sekine S, Shichiri M, Bernier S, Chenevert R, Lapointe J, Yokoyama S (2006) "Structural bases of transfer RNA-dependent amino acid recognition and activation by glutamyl-tRNA synthetase." Structure, 14, 1791-1799. doi: 10.1016/j.str.2006.10.005. Glutamyl-trna synthetase from thermus thermophilus in complex with trna(glu) and l-glutamate. SNAP output
2cv1 ligase-RNA X-ray (2.41 Å) Sekine S, Yokoyama S "Glutamyl-tRNA synthetase from Thermus thermophilus in complex with tRNA(Glu), ATP, and an analog of L-glutamate: a quaternary complex." Glutamyl-trna synthetase from thermus thermophilus in complex with trna(glu), atp, and an analog of l-glutamate: a quaternary complex. SNAP output
2cv2 ligase-RNA X-ray (2.69 Å) Sekine S, Shichiri M, Bernier S, Chenevert R, Lapointe J, Yokoyama S (2006) "Structural bases of transfer RNA-dependent amino acid recognition and activation by glutamyl-tRNA synthetase." Structure, 14, 1791-1799. doi: 10.1016/j.str.2006.10.005. Glutamyl-trna synthetase from thermus thermophilus in complex with trna(glu) and an enzyme inhibitor, glu-ams. SNAP output
2czj RNA binding protein-RNA X-ray (3.01 Å) Bessho Y, Shibata R, Sekine S, Murayama K, Higashijima K, Hori-Takemoto C, Shirouzu M, Kuramitsu S, Yokoyama S (2007) "Structural basis for functional mimicry of long-variable-arm tRNA by transfer-messenger RNA." Proc.Natl.Acad.Sci.Usa, 104, 8293-8298. doi: 10.1073/pnas.0700402104. Crystal structure of the trna domain of tmrna from thermus thermophilus hb8. SNAP output
2d3o ribosome X-ray (3.35 Å) Schlunzen F, Wilson DN, Tian P, Harms JM, McInnes SJ, Hansen HA, Albrecht R, Buerger J, Wilbanks SM, Fucini P (2005) "The Binding Mode of the Trigger Factor on the Ribosome: Implications for Protein Folding and SRP Interaction." Structure, 13, 1685-1694. doi: 10.1016/j.str.2005.08.007. Structure of ribosome binding domain of the trigger factor on the 50s ribosomal subunit from d. radiodurans. SNAP output
2d6f ligase-RNA X-ray (3.15 Å) Oshikane H, Sheppard K, Fukai S, Nakamura Y, Ishitani R, Numata T, Sherrer RL, Feng L, Schmitt E, Panvert M, Blanquet S, Mechulam Y, Soll D, Nureki O (2006) "Structural basis of RNA-dependent recruitment of glutamine to the genetic code." Science, 312, 1950-1954. doi: 10.1126/science.1128470. Crystal structure of glu-trna(gln) amidotransferase in the complex with trna(gln). SNAP output
2db3 hydrolase-RNA X-ray (2.2 Å) Sengoku T, Nureki O, Nakamura A, Kobayashi S, Yokoyama S (2006) "Structural basis for RNA unwinding by the DEAD-box protein Drosophila Vasa." Cell(Cambridge,Mass.), 125, 287-300. doi: 10.1016/j.cell.2006.01.054. Structural basis for RNA unwinding by the dead-box protein drosophila vasa. SNAP output
2der transferase-RNA X-ray (3.1 Å) Numata T, Ikeuchi Y, Fukai S, Suzuki T, Nureki O (2006) "Snapshots of tRNA sulphuration via an adenylated intermediate." Nature, 442, 419-424. doi: 10.1038/nature04896. Cocrystal structure of an RNA sulfuration enzyme mnma and trna-glu in the initial trna binding state. SNAP output
2det transferase-RNA X-ray (3.4 Å) Numata T, Ikeuchi Y, Fukai S, Suzuki T, Nureki O (2006) "Snapshots of tRNA sulphuration via an adenylated intermediate." Nature, 442, 419-424. doi: 10.1038/nature04896. Cocrystal structure of an RNA sulfuration enzyme mnma and trna-glu in the pre-reaction state. SNAP output
2deu transferase-RNA X-ray (3.4 Å) Numata T, Ikeuchi Y, Fukai S, Suzuki T, Nureki O (2006) "Snapshots of tRNA sulphuration via an adenylated intermediate." Nature, 442, 419-424. doi: 10.1038/nature04896. Cocrystal structure of an RNA sulfuration enzyme mnma and trna-glu in the adenylated intermediate state. SNAP output
2dr2 ligase-RNA X-ray (3.0 Å) Shen N, Guo L, Yang B, Jin Y, Ding J (2006) "Structure of human tryptophanyl-tRNA synthetase in complex with tRNA(Trp) reveals the molecular basis of tRNA recognition and specificity." Nucleic Acids Res., 34, 3246-3258. doi: 10.1093/nar/gkl441. Structure of human tryptophanyl-trna synthetase in complex with trna(trp). SNAP output
2dr5 transferase-RNA X-ray (2.8 Å) Tomita K, Ishitani R, Fukai S, Nureki O (2006) "Complete crystallographic analysis of the dynamics of CCA sequence addition." Nature, 443, 956-960. doi: 10.1038/nature05204. Complex structure of cca adding enzyme with mini-helix lacking cca. SNAP output
2dr7 transferase-RNA X-ray (2.8 Å) Tomita K, Ishitani R, Fukai S, Nureki O (2006) "Complete crystallographic analysis of the dynamics of CCA sequence addition." Nature, 443, 956-960. doi: 10.1038/nature05204. Complex structure of cca-adding enzyme with trnaminidc. SNAP output
2dr8 transferase-RNA X-ray (2.5 Å) Tomita K, Ishitani R, Fukai S, Nureki O (2006) "Complete crystallographic analysis of the dynamics of CCA sequence addition." Nature, 443, 956-960. doi: 10.1038/nature05204. Complex structure of cca-adding enzyme with trnaminidc and ctp. SNAP output
2dr9 transferase-RNA X-ray (2.8 Å) Tomita K, Ishitani R, Fukai S, Nureki O (2006) "Complete crystallographic analysis of the dynamics of CCA sequence addition." Nature, 443, 956-960. doi: 10.1038/nature05204. Complex structure of cca-adding enzyme with trnaminidcc. SNAP output
2dra transferase-RNA X-ray (2.5 Å) Tomita K, Ishitani R, Fukai S, Nureki O (2006) "Complete crystallographic analysis of the dynamics of CCA sequence addition." Nature, 443, 956-960. doi: 10.1038/nature05204. Complex structure of cca-adding enzyme with trnaminidcc and atp. SNAP output
2drb transferase-RNA X-ray (2.8 Å) Tomita K, Ishitani R, Fukai S, Nureki O (2006) "Complete crystallographic analysis of the dynamics of CCA sequence addition." Nature, 443, 956-960. doi: 10.1038/nature05204. Complex structure of cca-adding enzyme with trnaminicca. SNAP output
2du3 ligase-RNA X-ray (2.6 Å) Fukunaga R, Yokoyama S (2007) "Structural insights into the first step of RNA-dependent cysteine biosynthesis in archaea." Nat.Struct.Mol.Biol., 14, 272-279. doi: 10.1038/nsmb1219. Crystal structure of archaeoglobus fulgidus o-phosphoseryl-trna synthetase complexed with trnacys and o-phosphoserine. SNAP output
2du4 ligase-RNA X-ray (2.8 Å) Fukunaga R, Yokoyama S (2007) "Structural insights into the first step of RNA-dependent cysteine biosynthesis in archaea." Nat.Struct.Mol.Biol., 14, 272-279. doi: 10.1038/nsmb1219. Crystal structure of archaeoglobus fulgidus o-phosphoseryl-trna synthetase complexed with trnacys. SNAP output
2du5 ligase-RNA X-ray (3.2 Å) Fukunaga R, Yokoyama S (2007) "Structural insights into the first step of RNA-dependent cysteine biosynthesis in archaea." Nat.Struct.Mol.Biol., 14, 272-279. doi: 10.1038/nsmb1219. Crystal structure of archaeoglobus fulgidus o-phosphoseryl-trna synthetase e418n-e420n mutant complexed with trnaopal and o-phosphoserine ("opal complex"). SNAP output
2du6 ligase-RNA X-ray (3.3 Å) Fukunaga R, Yokoyama S (2007) "Structural insights into the first step of RNA-dependent cysteine biosynthesis in archaea." Nat.Struct.Mol.Biol., 14, 272-279. doi: 10.1038/nsmb1219. Crystal structure of archaeoglobus fulgidus o-phosphoseryl-trna synthetase e418n-e420n mutant complexed with trnaamber and o-phosphoserine ("amber complex"). SNAP output
2dvi transferase-RNA X-ray (2.61 Å) Tomita K, Ishitani R, Fukai S, Nureki O (2006) "Complete crystallographic analysis of the dynamics of CCA sequence addition." Nature, 443, 956-960. doi: 10.1038/nature05204. Complex structure of cca-adding enzyme, mini-dcc and ctp. SNAP output
2dxi ligase-RNA X-ray (2.2 Å) Sekine S, Shichiri M, Bernier S, Chenevert R, Lapointe J, Yokoyama S (2006) "Structural bases of transfer RNA-dependent amino acid recognition and activation by glutamyl-tRNA synthetase." Structure, 14, 1791-1799. doi: 10.1016/j.str.2006.10.005. 2.2 a crystal structure of glutamyl-trna synthetase from thermus thermophilus complexed with trna(glu), atp, and l-glutamol. SNAP output
2e5l ribosome X-ray (3.3 Å) Kaminishi T, Wilson DN, Takemoto C, Harms JM, Kawazoe M, Schluenzen F, Hanawa-Suetsugu K, Shirouzu M, Fucini P, Yokoyama S (2007) "A snapshot of the 30S ribosomal subunit capturing mRNA via the Shine-Dalgarno interaction." Structure, 15, 289-297. doi: 10.1016/j.str.2006.12.008. A snapshot of the 30s ribosomal subunit capturing mrna via the shine- dalgarno interaction. SNAP output
2e9r transferase-RNA X-ray (2.81 Å) Ferrer-Orta C, Arias A, Perez-Luque R, Escarmis C, Domingo E, Verdaguer N (2007) "Sequential structures provide insights into the fidelity of RNA replication." Proc.Natl.Acad.Sci.Usa, 104, 9463-9468. doi: 10.1073/pnas.0700518104. Foot-and-mouth disease virus RNA-dependent RNA polymerase in complex with a template-primer RNA and with ribavirin. SNAP output
2e9t transferase-RNA X-ray (2.6 Å) Ferrer-Orta C, Arias A, Perez-Luque R, Escarmis C, Domingo E, Verdaguer N (2007) "Sequential structures provide insights into the fidelity of RNA replication." Proc.Natl.Acad.Sci.Usa, 104, 9463-9468. doi: 10.1073/pnas.0700518104. Foot-and-mouth disease virus RNA-polymerase RNA dependent in complex with a template-primer RNA and 5f-utp. SNAP output
2e9z transferase-RNA X-ray (3.0 Å) Ferrer-Orta C, Arias A, Perez-Luque R, Escarmis C, Domingo E, Verdaguer N (2007) "Sequential structures provide insights into the fidelity of RNA replication." Proc.Natl.Acad.Sci.Usa, 104, 9463-9468. doi: 10.1073/pnas.0700518104. Foot-and-mouth disease virus RNA-polymerase in complex with a template- primer RNA, atp and utp. SNAP output
2ec0 transferase-RNA X-ray (2.75 Å) Ferrer-Orta C, Arias A, Perez-Luque R, Escarmis C, Domingo E, Verdaguer N (2007) "Sequential structures provide insights into the fidelity of RNA replication." Proc.Natl.Acad.Sci.Usa, 104, 9463-9468. doi: 10.1073/pnas.0700518104. RNA-dependent RNA polymerase of foot-and-mouth disease virus in complex with a template-primer RNA and atp. SNAP output
2err RNA binding protein NMR Auweter SD, Fasan R, Reymond L, Underwood JG, Black DL, Pitsch S, Allain FH (2006) "Molecular basis of RNA recognition by the human alternative splicing factor Fox-1." Embo J., 25, 163-173. doi: 10.1038/sj.emboj.7600918. NMR structure of the RNA binding domain of human fox-1 in complex with ugcaugu. SNAP output
2ese protein-RNA complex NMR Oberstrass FC, Lee A, Stefl R, Janis M, Chanfreau G, Allain FH (2006) "Shape-specific recognition in the structure of the Vts1p SAM domain with RNA." Nat.Struct.Mol.Biol., 13, 160-167. doi: 10.1038/nsmb1038. Structure of the sam domain of vts1p in complex with RNA. SNAP output
2ez6 hydrolase-RNA X-ray (2.05 Å) Gan J, Tropea JE, Austin BP, Court DL, Waugh DS, Ji X (2006) "Structural Insight into the Mechanism of Double-Stranded RNA Processing by Ribonuclease III." Cell(Cambridge,Mass.), 124, 355-366. doi: 10.1016/j.cell.2005.11.034. Crystal structure of aquifex aeolicus rnase iii (d44n) complexed with product of double-stranded RNA processing. SNAP output
2f4v ribosome X-ray (3.8 Å) Murray JB, Meroueh SO, Russell RJ, Lentzen G, Haddad J, Mobashery S (2006) "Interactions of designer antibiotics and the bacterial ribosome aminoacyl-tRNA site." Chem.Biol., 13, 129-138. doi: 10.1016/j.chembiol.2005.11.004. 30s ribosome + designer antibiotic. SNAP output
2f8k RNA binding protein- RNA X-ray (2.0 Å) Aviv T, Lin Z, Ben-Ari G, Smibert CA, Sicheri F (2006) "Sequence-specific recognition of RNA hairpins by the SAM domain of Vts1p." Nat.Struct.Mol.Biol., 13, 168-176. doi: 10.1038/nsmb1053. Sequence specific recognition of RNA hairpins by the sam domain of vts1. SNAP output
2f8s RNA binding protein-RNA X-ray (3.0 Å) Yuan YR, Pei Y, Chen HY, Tuschl T, Patel DJ (2006) "A Potential Protein-RNA Recognition Event along the RISC-Loading Pathway from the Structure of A. aeolicus Argonaute with Externally Bound siRNA." Structure, 14, 1557-1565. doi: 10.1016/j.str.2006.08.009. Crystal structure of aa-ago with externally-bound sirna. SNAP output
2f8t RNA binding protein-RNA X-ray (3.1 Å) Yuan YR, Pei Y, Chen HY, Tuschl T, Patel DJ (2006) "A Potential Protein-RNA Recognition Event along the RISC-Loading Pathway from the Structure of A. aeolicus Argonaute with Externally Bound siRNA." Structure, 14, 1557-1565. doi: 10.1016/j.str.2006.08.009. Crystal structure of aa-ago with externally-bound sirna. SNAP output
2fk6 hydrolase-RNA X-ray (2.9 Å) Li de la Sierra-Gallay I, Mathy N, Pellegrini O, Condon C (2006) "Structure of the ubiquitous 3' processing enzyme RNase Z bound to transfer RNA." Nat.Struct.Mol.Biol., 13, 376-377. doi: 10.1038/nsmb1066. Crystal structure of rnase z-trna(thr) complex. SNAP output
2fmt complex (methyltransferase-trna) X-ray (2.8 Å) Schmitt E, Panvert M, Blanquet S, Mechulam Y (1998) "Crystal structure of methionyl-tRNAfMet transformylase complexed with the initiator formyl-methionyl-tRNAfMet." EMBO J., 17, 6819-6826. doi: 10.1093/emboj/17.23.6819. Methionyl-trnafmet formyltransferase complexed with formyl-methionyl-trnafmet. SNAP output
2fy1 structural protein-RNA NMR Skrisovska L, Bourgeois CF, Stefl R, Grellscheid SN, Kister L, Wenter P, Elliott DJ, Stevenin J, Allain FH (2007) "The testis-specific human protein RBMY recognizes RNA through a novel mode of interaction." EMBO Rep., 8, 372-379. doi: 10.1038/sj.embor.7400910. A dual mode of RNA recognition by the rbmy protein. SNAP output
2fz2 virus-RNA X-ray (2.9 Å) Larson SB, Lucas RW, Greenwood A, McPherson A (2005) "The RNA of turnip yellow mosaic virus exhibits icosahedral order." Virology, 334, 245-254. doi: 10.1016/j.virol.2005.01.036. Structure of turnip yellow mosaic virus at 100 k. SNAP output
2g4b RNA binding protein-RNA X-ray (2.5 Å) Sickmier EA, Frato KE, Paranawithana S, Shen H, Green MR, Kielkopf CL (2006) "Structural basis of polypyrimidine tract recognition by the essential splicing factor U2AF65." Mol.Cell, 23, 49-59. doi: 10.1016/j.molcel.2006.05.025. Structure of u2af65 variant with polyuridine tract. SNAP output
2gic virus-viral protein-RNA X-ray (2.92 Å) Green TJ, Zhang X, Wertz GW, Luo M (2006) "Structure of the vesicular stomatitis virus nucleoprotein-RNA complex unveils how the RNA is sequestered." Science, 313, 357-360. doi: 10.1126/science.1126953. Crystal structure of a vesicular stomatitis virus nucleocapsid-RNA complex. SNAP output
2gje translation-RNA X-ray (3.37 Å) Schumacher MA, Karamooz E, Zikova A, Trantirek L, Lukes J (2006) "Crystal Structures of T. brucei MRP1/MRP2 Guide-RNA Binding Complex Reveal RNA Matchmaking Mechanism." Cell(Cambridge,Mass.), 126, 701-711. doi: 10.1016/j.cell.2006.06.047. Structure of a guiderna-binding protein complex bound to a grna. SNAP output
2gjw hydrolase-RNA X-ray (2.85 Å) Xue S, Calvin K, Li H (2006) "RNA Recognition and Cleavage by an Splicing Endonuclease." Science, 312, 902-910. doi: 10.1126/science.1126629. RNA recognition and cleavage by an splicing endonuclease. SNAP output
2go5 translation-RNA cryo-EM (7.4 Å) Halic M, Gartmann M, Schlenker O, Mielke T, Pool MR, Sinning I, Beckmann R (2006) "Signal Recognition Particle Receptor Exposes the Ribosomal Translocon Binding Site." Science, 312, 745-747. doi: 10.1126/science.1124864. Structure of signal recognition particle receptor (sr) in complex with signal recognition particle (srp) and ribosome nascent chain complex. SNAP output
2gtt viral protein, RNA binding protein X-ray (3.49 Å) Albertini AAV, Wernimont AK, Muziol T, Ravelli RBG, Clapier CR, Schoehn G, Weissenhorn W, Ruigrok RWH (2006) "Crystal Structure of the Rabies Virus Nucleoprotein-RNA Complex." Science, 313, 360-363. doi: 10.1126/science.1125280. Crystal structure of the rabies virus nucleoprotein-RNA complex. SNAP output
2gxb hydrolase-RNA X-ray (2.25 Å) Placido D, Brown BA, Lowenhaupt K, Rich A, Athanasiadis A (2007) "A Left-Handed RNA Double Helix Bound by the Zalpha Domain of the RNA-Editing Enzyme ADAR1." Structure, 15, 395-404. doi: 10.1016/j.str.2007.03.001. Crystal structure of the za domain bound to z-RNA. SNAP output
2hgh transcription-RNA NMR Lee BM, Xu J, Clarkson BK, Martinez-Yamout MA, Dyson JH, Case DA, Gottesfeld JM, Wright PE (2006) "Induced Fit and 'Lock and Key' Recognition of 5 S RNA by Zinc Fingers of Transcription Factor IIIA." J.Mol.Biol., 357, 275-291. doi: 10.1016/j.jmb.2005.12.010. Transcription factor iiia zinc fingers 4-6 bound to 5s rrna 55mer (NMR structure). SNAP output
2hhh ribosome X-ray (3.35 Å) Schluenzen F, Takemoto C, Wilson DN, Kaminishi T, Harms JM, Hanawa-Suetsugu K, Szaflarski W, Kawazoe M, Shirouzo M, Nierhaus KH, Yokoyama S, Fucini P (2006) "The antibiotic kasugamycin mimics mRNA nucleotides to destabilize tRNA binding and inhibit canonical translation initiation." Nat.Struct.Mol.Biol., 13, 871-878. doi: 10.1038/nsmb1145. Crystal structure of kasugamycin bound to the 30s ribosomal subunit. SNAP output
2ht1 hydrolase-RNA X-ray (3.51 Å) Skordalakes E, Berger JM (2006) "Structural Insights into RNA-Dependent Ring Closure and ATPase Activation by the Rho Termination Factor." Cell(Cambridge,Mass.), 127, 553-564. doi: 10.1016/j.cell.2006.08.051. The closed ring structure of the rho transcription termination factor in complex with nucleic acid in the motor domains. SNAP output
2hvy isomerase-biosynthetic protein-RNA X-ray (2.3 Å) Li L, Ye K (2006) "Crystal structure of an H/ACA box ribonucleoprotein particle." Nature, 443, 302-307. doi: 10.1038/nature05151. Crystal structure of an h-aca box rnp from pyrococcus furiosus. SNAP output
2hw8 structural protein-RNA X-ray (2.1 Å) Tishchenko S, Nikonova E, Nikulin A, Nevskaya N, Volchkov S, Piendl W, Garber M, Nikonov S (2006) "Structure of the ribosomal protein L1-mRNA complex at 2.1 A resolution: common features of crystal packing of L1-RNA complexes." ACTA CRYSTALLOGR.,SECT.D, 62, 1545-1554. doi: 10.1107/S0907444906041655. Structure of ribosomal protein l1-mrna complex at 2.1 resolution.. SNAP output
2hyi hydrolase-RNA binding protein-RNA X-ray (2.3 Å) Andersen CBF, Ballut L, Johansen JS, Chamieh H, Nielsen KH, Oliveira CL, Pedersen JS, Seraphin B, Le Hir H, Andersen GR (2006) "Structure of the exon junction core complex with a trapped DEAD-box ATPase bound to RNA." Science, 313, 1968-1972. doi: 10.1126/science.1131981. Structure of the human exon junction complex with a trapped dead-box helicase bound to RNA. SNAP output
2i2y RNA binding protein-chimera-RNA NMR Hargous Y, Hautbergue GM, Tintaru AM, Skrisovska L, Golovanov AP, Stevenin J, Lian LY, Wilson SA, Allain FH (2006) "Molecular basis of RNA recognition and TAP binding by the SR proteins SRp20 and 9G8." Embo J., 25, 5126-5137. doi: 10.1038/sj.emboj.7601385. Solution structure of the rrm of srp20 bound to the RNA cauc. SNAP output
2i82 lyase-RNA X-ray (2.05 Å) Hoang C, Chen J, Vizthum CA, Kandel JM, Hamilton CS, Mueller EG, Ferre-D'Amare AR (2006) "Crystal structure of pseudouridine synthase RluA: indirect sequence readout through protein-induced RNA structure." Mol.Cell, 24, 535-545. doi: 10.1016/j.molcel.2006.09.017. Crystal structure of pseudouridine synthase rlua: indirect sequence readout through protein-induced RNA structure. SNAP output
2i91 RNA binding protein-RNA X-ray (2.65 Å) Fuchs G, Stein AJ, Fu C, Reinisch KM, Wolin SL (2006) "Structural and biochemical basis for misfolded RNA recognition by the Ro autoantigen." Nat.Struct.Mol.Biol., 13, 1002-1009. doi: 10.1038/nsmb1156. 60kda ro autoantigen in complex with a fragment of misfolded RNA. SNAP output
2ihx viral protein-RNA NMR Zhou J, Bean RL, Vogt VM, Summers M (2007) "Solution Structure of the Rous Sarcoma Virus Nucleocapsid Protein: muPsi RNA Packaging Signal Complex." J.Mol.Biol., 365, 453-467. doi: 10.1016/j.jmb.2006.10.013. Solution structure of the rous sarcoma virus nucleocapsid protein:upsi RNA packaging signal complex. SNAP output
2ix1 hydrolase X-ray (2.74 Å) Frazao C, Mcvey CE, Amblar M, Barbas A, Vonrhein C, Arraiano CM, Carrondo MA (2006) "Unravelling the Dynamics of RNA Degradation by Ribonuclease II and its RNA-Bound Complex." Nature, 443, 110. doi: 10.1038/NATURE05080. Rnase ii d209n mutant. SNAP output
2iy5 ligase X-ray (3.1 Å) Moor N, Kotik-Kogan O, Tworowski D, Sukhanova M, Safro M (2006) "The crystal structure of the ternary complex of phenylalanyl-tRNA synthetase with tRNAPhe and a phenylalanyl-adenylate analogue reveals a conformational switch of the CCA end." Biochemistry, 45, 10572-10583. doi: 10.1021/bi060491l. Phenylalanyl-trna synthetase from thermus thermophilus complexed with trna and a phenylalanyl-adenylate analog. SNAP output
2iz8 virus-RNA X-ray (3.3 Å) Helgstrand C, Grahn E, Moss T, Stonehouse NJ, Tars K, Stockley PG, Liljas L (2002) "Investigating the Structural Basis of Purine Specificity in the Structures of MS2 Coat Protein RNA Translational Operator Hairpins." Nucleic Acids Res., 30, 2678. doi: 10.1093/NAR/GKF371. Ms2-RNA hairpin (c-7) complex. SNAP output
2iz9 virus-RNA X-ray (2.85 Å) Grahn E, Stonehouse NJ, Adams CJ, Fridborg K, Beigelman L, Matulic-Adamic J, Warriner SL, Stockley PG, Liljas L (2000) "Deletion of a Single Hydrogen Bonding Atom from the MS2 RNA Operator Leads to Dramatic Rearrangements at the RNA-Coat Protein Interface." Nucleic Acids Res., 28, 4611. doi: 10.1093/NAR/28.23.4611. Ms2-RNA hairpin (4one -5) complex. SNAP output
2izm virus-RNA X-ray (2.7 Å) Helgstrand C, Grahn E, Moss T, Stonehouse NJ, Tars K, Stockley PG, Liljas L (2002) "Investigating the Structural Basis of Purine Specificity in the Structures of MS2 Coat Protein RNA Translational Operator Complexes." Nucleic Acids Res., 30, 2678. doi: 10.1093/NAR/GKF371. Ms2-RNA hairpin (c-10) complex. SNAP output
2izn virus-RNA X-ray (2.56 Å) Helgstrand C, Grahn E, Moss T, Stonehouse NJ, Tars K, Stockley PG, Liljas L (2002) "Investigating the Structural Basis of Purine Specificity in the Structures of MS2 Coat Protein RNA Translational Operator Complexes." Nucleic Acids Res., 30, 2678. doi: 10.1093/NAR/GKF371. Ms2-RNA hairpin (g-10) complex. SNAP output
2j0q hydrolase X-ray (3.2 Å) Bono F, Ebert J, Lorentzen E, Conti E (2006) "The Crystal Structure of the Exon Junction Complex Reveals How It Maintains a Stable Grip on Mrna." Cell(Cambridge,Mass.), 126, 713. doi: 10.1016/J.CELL.2006.08.006. The crystal structure of the exon junction complex at 3.2 Å resolution. SNAP output
2j0s hydrolase X-ray (2.21 Å) Bono F, Ebert J, Lorentzen E, Conti E (2006) "The Crystal Structure of the Exon Junction Complex Reveals How It Mantains a Stable Grip on Mrna." Cell(Cambridge,Mass.), 126, 713. doi: 10.1016/J.CELL.2006.08.006. The crystal structure of the exon junction complex at 2.2 Å resolution. SNAP output
2j28 ribosome cryo-EM (8.0 Å) Halic M, Blau M, Becker T, Mielke T, Pool MR, Wild K, Sinning I, Beckmann R (2006) "Following the Signal Sequence from Ribosomal Tunnel Exit to Signal Recognition Particle." Nature, 444, 508-511. doi: 10.1038/nature05326. Model of e. coli srp bound to 70s rncs. SNAP output
2j37 ribosome cryo-EM (8.0 Å) Halic M, Blau M, Becker T, Mielke T, Pool MR, Wild K, Sinning I, Beckmann R (2006) "Following the signal sequence from ribosomal tunnel exit to signal recognition particle." Nature, 444, 507-511. doi: 10.1038/nature05326. Model of mammalian srp bound to 80s rncs. SNAP output
2jea hydrolase-RNA X-ray (2.33 Å) Lorentzen E, Dziembowski A, Lindner D, Seraphin B, Conti E (2007) "RNA Channelling by the Archaeal Exosome." Embo Rep., 8, 470. doi: 10.1038/SJ.EMBOR.7400945. Structure of a 9-subunit archaeal exosome bound to RNA. SNAP output
2jlu hydrolase-RNA X-ray (2.04 Å) Luo D, Xu T, Watson RP, Scherer-Becker D, Sampath A, Jahnke W, Yeong SS, Wang CH, Lim SP, Strongin A, Vasudevan SG, Lescar J (2008) "Insights Into RNA Unwinding and ATP Hydrolysis by the Flavivirus Ns3 Protein." Embo J., 27, 3209. doi: 10.1038/EMBOJ.2008.232. Dengue virus 4 ns3 helicase in complex with ssrna. SNAP output
2jlv hydrolase-RNA X-ray (1.9 Å) Luo DH, Xu T, Watson RP, Becker DS, Sampath A, Jahnke W, Yeong SS, Wang CH, Lim SP, Strongin A, Vasudevan SG, Lescar J (2008) "Insights Into RNA Unwinding and ATP Hydrolysis by the Flavivirus Ns3 Protein." Embo J., 27, 3209. doi: 10.1038/EMBOJ.2008.232. Dengue virus 4 ns3 helicase in complex with ssrna and amppnp. SNAP output
2jlw hydrolase-RNA X-ray (2.6 Å) Luo DH, Xu T, Watson RP, Becker DS, Sampath A, Jahnke W, Yeong SS, Wang CH, Lim SP, Strongin A, Vasudevan SG, Lescar J (2008) "Insights Into RNA Unwinding and ATP Hydrolysis by the Flavivirus Ns3 Protein." Embo J., 27, 3209. doi: 10.1038/EMBOJ.2008.232. Dengue virus 4 ns3 helicase in complex with ssrna2. SNAP output
2jlx hydrolase-RNA X-ray (2.2 Å) Luo DH, Xu T, Watson RP, Scherer-Becker D, Sampath A, Jahnke W, Yeong SS, Wang CH, Lim SP, Strongin A, Vasudevan SG, Lescar J (2008) "Insights Into RNA Unwinding and ATP Hydrolysis by the Flavivirus Ns3 Protein." Embo J., 27, 3209. doi: 10.1038/EMBOJ.2008.232. Dengue virus 4 ns3 helicase in complex with ssrna and adp-vanadate. SNAP output
2jly hydrolase-RNA X-ray (2.4 Å) Luo D, Xu T, Watson RP, Scherer-Becker D, Sampath A, Jahnke W, Yeong SS, Wang CH, Lim SP, Strongin A, Vasudevan SG, Lescar J (2008) "Insights Into RNA Unwinding and ATP Hydrolysis by the Flavivirus Ns3 Protein." Embo J., 27, 3209. doi: 10.1038/EMBOJ.2008.232. Dengue virus 4 ns3 helicase in complex with ssrna and adp-phosphate. SNAP output
2jlz hydrolase-RNA X-ray (2.2 Å) Luo D, Xu T, Watson RP, Scherer-Becker D, Sampath A, Jahnke W, Yeong SS, Wang CH, Lim SP, Strongin A, Vasudevan SG, Lescar J (2008) "Insights Into RNA Unwinding and ATP Hydrolysis by the Flavivirus Ns3 Protein." Embo J., 27, 3209. doi: 10.1038/EMBOJ.2008.232. Dengue virus 4 ns3 helicase in complex with ssrna and adp. SNAP output
2jpp translation-RNA NMR Schubert M, Lapouge K, Duss O, Oberstrass FC, Jelesarov I, Haas D, Allain FH-T (2007) "Molecular basis of messenger RNA recognition by the specific bacterial repressing clamp RsmA/CsrA." Nat.Struct.Mol.Biol., 14, 807-813. doi: 10.1038/nsmb1285. Structural basis of rsma-csra RNA recognition: structure of rsme bound to the shine-dalgarno sequence of hcna mrna. SNAP output
2jq7 ribosome-antibiotic NMR Jonker HRA, Ilin S, Grimm SK, Woehnert J, Schwalbe H (2007) "L11 Domain Rearrangement Upon Binding to RNA and Thiostrepton Studied by NMR Spectroscopy." Nucleic Acids Res., 35, 441. doi: 10.1093/NAR/GKL1066. Model for thiostrepton binding to the ribosomal l11-RNA. SNAP output
2kdq RNA binding protein-RNA NMR Davidson A, Leeper TC, Athanassiou Z, Patora-Komisarska K, Karn J, Robinson JA, Varani G (2009) "Simultaneous recognition of HIV-1 TAR RNA bulge and loop sequences by cyclic peptide mimics of Tat protein." Proc.Natl.Acad.Sci.USA, 106, 11931-11936. doi: 10.1073/pnas.0900629106. Simultaneous recognition of hiv-1 tar RNA bulge and loop sequences by cyclic peptide mimic of tat protein. SNAP output
2kfy RNA binding protein-RNA NMR Dominguez C, Fisette JF, Chabot B, Allain FH (2010) "Structural basis of G-tract recognition and encaging by hnRNP F quasi-RRMs." Nat.Struct.Mol.Biol., 17, 853-861. doi: 10.1038/nsmb.1814. NMR structure of the first qrrm of hnrnp f in complex with agggau g-tract RNA. SNAP output
2kg0 RNA binding protein-RNA NMR Dominguez C, Fisette JF, Chabot B, Allain FH (2010) "Structural basis of G-tract recognition and encaging by hnRNP F quasi-RRMs." Nat.Struct.Mol.Biol., 17, 853-861. doi: 10.1038/nsmb.1814. Structure of the second qrrm domain of hnrnp f in complex with a agggau g-tract RNA. SNAP output
2kg1 RNA binding protein-RNA NMR Dominguez C, Fisette JF, Chabot B, Allain FH (2010) "Structural basis of G-tract recognition and encaging by hnRNP F quasi-RRMs." Nat.Struct.Mol.Biol., 17, 853-861. doi: 10.1038/nsmb.1814. Structure of the third qrrm domain of hnrnp f in complex with a agggau g-tract RNA. SNAP output
2kh9 splicing-RNA NMR Martin-Tumasz S, Reiter NJ, Brow DA, Butcher SE (2010) "Structure and functional implications of a complex containing a segment of U6 RNA bound by a domain of Prp24." Rna, 16, 792-804. doi: 10.1261/rna.1913310. Solution structure of yeast prp24-rrm2 bound to a fragment of u6 RNA. SNAP output
2km8 RNA binding protein-RNA NMR Leeper TC, Qu X, Lu C, Moore C, Varani G (2010) "Novel Protein-Protein Contacts Facilitate mRNA 3'-Processing Signal Recognition by Rna15 and Hrp1." J.Mol.Biol., 401, 334-349. doi: 10.1016/j.jmb.2010.06.032. Interdomain rrm packing contributes to RNA recognition in the rna15, hrp1, anchor RNA 3' processing ternary complex. SNAP output
2kmj RNA-peptide NMR Ferner J, Suhartono M, Breitung S, Jonker HRA, Hennig M, Wohnert J, Gobel M, Schwalbe H (2009) "Structures of HIV TAR RNA-ligand complexes reveal higher binding stoichiometries." Chembiochem, 10, 1490-1494. doi: 10.1002/cbic.200900220. High resolution NMR solution structure of a complex of hiv-2 tar RNA and a synthetic tripeptide in a 1:2 stoichiometry. SNAP output
2kx5 RNA binding protein-RNA NMR Davidson A, Patora-Komisarska K, Robinson JA, Varani G (2011) "Essential structural requirements for specific recognition of HIV TAR RNA by peptide mimetics of Tat protein." Nucleic Acids Res., 39, 248-256. doi: 10.1093/nar/gkq713. Recognition of hiv tar RNA by peptide mimetic of tat protein. SNAP output
2kxn RNA binding protein-RNA NMR Clery A, Jayne S, Benderska N, Dominguez C, Stamm S, Allain FH (2011) "Molecular basis of purine-rich RNA recognition by the human SR-like protein Tra2-beta1." Nat.Struct.Mol.Biol., 18, 443-450. doi: 10.1038/nsmb.2001. NMR structure of human tra2beta1 rrm in complex with aagaac RNA. SNAP output
2l2k hydrolase-RNA NMR Stefl R, Oberstrass FC, Hood JL, Jourdan M, Zimmermann M, Skrisovska L, Maris C, Peng L, Hofr C, Emeson RB, Allain FH (2010) "The Solution Structure of the ADAR2 dsRBM-RNA Complex Reveals a Sequence-Specific Readout of the Minor Groove." Cell(Cambridge,Mass.), 143, 225-237. doi: 10.1016/j.cell.2010.09.026. Solution NMR structure of the r-g stem loop RNA-adar2 dsrbm2 complex. SNAP output
2l3c hydrolase-RNA NMR Stefl R, Oberstrass FC, Hood JL, Jourdan M, Zimmermann M, Skrisovska L, Maris C, Peng L, Hofr C, Emeson RB, Allain FH (2010) "The Solution Structure of the ADAR2 dsRBM-RNA Complex Reveals a Sequence-Specific Readout of the Minor Groove." Cell(Cambridge,Mass.), 143, 225-237. doi: 10.1016/j.cell.2010.09.026. Solution structure of adar2 dsrbm1 bound to lsl RNA. SNAP output
2l3j hydrolase-RNA NMR Stefl R, Oberstrass FC, Hood JL, Jourdan M, Zimmermann M, Skrisovska L, Maris C, Peng L, Hofr C, Emeson RB, Allain FH (2010) "The Solution Structure of the ADAR2 dsRBM-RNA Complex Reveals a Sequence-Specific Readout of the Minor Groove." Cell(Cambridge,Mass.), 143, 225-237. doi: 10.1016/j.cell.2010.09.026. The solution structure of the adar2 dsrbm-RNA complex reveals a sequence-specific read out of the minor groove. SNAP output
2l41 RNA binding protein-RNA NMR Hobor F, Pergoli R, Kubicek K, Hrossova D, Bacikova V, Zimmermann M, Pasulka J, Hofr C, Vanacova S, Stefl R (2011) "Recognition of transcription termination signal by the nuclear polyadenylated RNA-binding (NAB) 3 protein." J.Biol.Chem., 286, 3645-3657. doi: 10.1074/jbc.M110.158774. Nab3 rrm - ucuu complex. SNAP output
2l5d RNA binding protein-RNA NMR Zeng L, Zhang Q, Yan K, Zhou MM (2011) "Structural insights into piRNA recognition by the human PIWI-like 1 PAZ domain." Proteins, 79, 2004-2009. doi: 10.1002/prot.23003. Solution structures of human piwi-like 1 paz domain with ssrna (5'-pugaca). SNAP output
2la5 RNA binding protein-RNA NMR Phan AT, Kuryavyi V, Darnell JC, Serganov A, Majumdar A, Ilin S, Raslin T, Polonskaia A, Chen C, Clain D, Darnell RB, Patel DJ (2011) "Structure-function studies of FMRP RGG peptide recognition of an RNA duplex-quadruplex junction." Nat.Struct.Mol.Biol., 18, 796-804. doi: 10.1038/nsmb.2064. RNA duplex-quadruplex junction complex with fmrp rgg peptide. SNAP output
2lbs hydrolase-RNA NMR Wang Z, Hartman E, Roy K, Chanfreau G, Feigon J (2011) "Structure of a Yeast RNase III dsRBD Complex with a Noncanonical RNA Substrate Provides New Insights into Binding Specificity of dsRBDs." Structure, 19, 999-1010. doi: 10.1016/j.str.2011.03.022. Solution structure of double-stranded RNA binding domain of s. cerevisiae rnase iii (rnt1p) in complex with aagu tetraloop hairpin. SNAP output
2leb RNA binding protein-RNA NMR Daubner GM, Clery A, Jayne S, Stevenin J, Allain FH (2012) "A syn-anti conformational difference allows SRSF2 to recognize guanines and cytosines equally well." Embo J., 31, 162-174. doi: 10.1038/emboj.2011.367. Solution structure of human srsf2 (sc35) rrm in complex with 5'-uccagu-3'. SNAP output
2lec RNA binding protein-RNA NMR Daubner GM, Clery A, Jayne S, Stevenin J, Allain FH (2012) "A syn-anti conformational difference allows SRSF2 to recognize guanines and cytosines equally well." Embo J., 31, 162-174. doi: 10.1038/emboj.2011.367. Solution structure of human srsf2 (sc35) rrm in complex with 5'-uggagu-3'. SNAP output
2li8 transcription-RNA NMR Loughlin FE, Gebert LF, Towbin H, Brunschweiger A, Hall J, Allain FH (2011) "Structural basis of pre-let-7 miRNA recognition by the zinc knuckles of pluripotency factor Lin28." Nat.Struct.Mol.Biol., 19, 84-89. doi: 10.1038/nsmb.2202. The solution structure of the lin28-znf domains bound to aggagau of pre-let-7 mirna. SNAP output
2lup RNA binding protein-RNA NMR Wang Z, Hartman E, Roy K, Chanfreau G, Feigon J (2011) "Structure of a yeast RNase III dsRBD complex with a noncanonical RNA substrate provides new insights into binding specificity of dsRBDs." Structure, 19, 999-1010. doi: 10.1016/j.str.2011.03.022. Rdc refined solution structure of double-stranded RNA binding domain of s. cerevisiae rnase iii (rnt1p) in complex with the terminal RNA hairpin of snr47 precursor. SNAP output
2m8d RNA binding protein-RNA NMR Clery A, Sinha R, Anczukow O, Corrionero A, Moursy A, Daubner GM, Valcarcel J, Krainer AR, Allain FH (2013) "Isolated pseudo-RNA-recognition motifs of SR proteins can regulate splicing using a noncanonical mode of RNA recognition." Proc.Natl.Acad.Sci.USA, 110, E2802-E2811. doi: 10.1073/pnas.1303445110. Structure of srsf1 rrm2 in complex with the RNA 5'-ugaaggac-3'. SNAP output
2mb0 splicing-RNA NMR Moursy A, Allain FH, Clery A (2014) "Characterization of the RNA recognition mode of hnRNP G extends its role in SMN2 splicing regulation." Nucleic Acids Res., 42, 6659-6672. doi: 10.1093/nar/gku244. Solution structure of hnrnp g rrm in complex with the RNA 5'-aucaaa-3'. SNAP output
2mf0 RNA binding protein-RNA NMR Duss O, Michel E, Yulikov M, Schubert M, Jeschke G, Allain FH (2014) "Structural basis of the non-coding RNA RsmZ acting as a protein sponge." Nature, 509, 588-592. doi: 10.1038/nature13271. Structural basis of the non-coding RNA rsmz acting as protein sponge: conformer l of rsmz(1-72)-rsme(dimer) 1to3 complex. SNAP output
2mf1 RNA binding protein-RNA NMR Duss O, Michel E, Yulikov M, Schubert M, Jeschke G, Allain FH (2014) "Structural basis of the non-coding RNA RsmZ acting as a protein sponge." Nature, 509, 588-592. doi: 10.1038/nature13271. Structural basis of the non-coding RNA rsmz acting as protein sponge: conformer r of rsmz(1-72)-rsme(dimer) 1to3 complex. SNAP output
2mfc translation-RNA NMR Duss O, Michel E, Diarra Dit Konte N, Schubert M, Allain FH (2014) "Molecular basis for the wide range of affinity found in Csr/Rsm protein-RNA recognition." Nucleic Acids Res., 42, 5332-5346. doi: 10.1093/nar/gku141. Csr-rsm protein-RNA recognition - a molecular affinity ruler: rsmz(sl1)-rsme(dimer) 2:1 complex. SNAP output
2mfe translation-RNA NMR Duss O, Michel E, Diarra Dit Konte N, Schubert M, Allain FH (2014) "Molecular basis for the wide range of affinity found in Csr/Rsm protein-RNA recognition." Nucleic Acids Res., 42, 5332-5346. doi: 10.1093/nar/gku141. Csr-rsm protein-RNA recognition - a molecular affinity ruler: rsmz(sl2)-rsme(dimer) 2:1 complex. SNAP output
2mff translation-RNA NMR Duss O, Michel E, Diarra Dit Konte N, Schubert M, Allain FH (2014) "Molecular basis for the wide range of affinity found in Csr/Rsm protein-RNA recognition." Nucleic Acids Res., 42, 5332-5346. doi: 10.1093/nar/gku141. Csr-rsm protein-RNA recognition - a molecular affinity ruler: rsmz(sl3)-rsme(dimer) 2:1 complex. SNAP output
2mfg translation-RNA NMR Duss O, Michel E, Diarra Dit Konte N, Schubert M, Allain FH (2014) "Molecular basis for the wide range of affinity found in Csr/Rsm protein-RNA recognition." Nucleic Acids Res., 42, 5332-5346. doi: 10.1093/nar/gku141. Csr-rsm protein-RNA recognition - a molecular affinity ruler: rsmz(sl4)-rsme(dimer) 2:1 complex. SNAP output
2mfh translation-RNA NMR Duss O, Michel E, Diarra Dit Konte N, Schubert M, Allain FH (2014) "Molecular basis for the wide range of affinity found in Csr/Rsm protein-RNA recognition." Nucleic Acids Res., 42, 5332-5346. doi: 10.1093/nar/gku141. Csr-rsm protein-RNA recognition - a molecular affinity ruler: rsmz(36-44)-rsme(dimer) 2:1 complex. SNAP output
2mgz RNA binding protein-RNA NMR Kuwasako K, Takahashi M, Unzai S, Tsuda K, Yoshikawa S, He F, Kobayashi N, Guntert P, Shirouzu M, Ito T, Tanaka A, Yokoyama S, Hagiwara M, Kuroyanagi H, Muto Y (2014) "RBFOX and SUP-12 sandwich a G base to cooperatively regulate tissue-specific splicing." Nat.Struct.Mol.Biol., 21, 778-786. doi: 10.1038/nsmb.2870. Solution structure of rbfox family asd-1 rrm and sup-12 rrm in ternary complex with RNA. SNAP output
2mjh RNA binding protein NMR Daubner GM, Brummer A, Tocchini C, Gerhardy S, Ciosk R, Zavolan M, Allain FH (2014) "Structural and functional implications of the QUA2 domain on RNA recognition by GLD-1." Nucleic Acids Res., 42, 8092-8105. doi: 10.1093/nar/gku445. Solution structure of the gld-1 RNA-binding domain in complex with RNA. SNAP output
2mki translation regulator-RNA NMR Afroz T, Skrisovska L, Belloc E, Guillen-Boixet J, Mendez R, Allain FH-T (2014) "A fly trap mechanism provides sequence-specific RNA recognition by CPEB proteins." Genes Dev., 28, 1498-1514. doi: 10.1101/gad.241133.114. Solution structure of tandem rrm domains of cytoplasmic polyadenylation element binding protein 4 (cpeb4) in complex with RNA. SNAP output
2mkk translation regulator-RNA NMR Afroz T, Skrisovska L, Belloc E, Guillen-Boixet J, Mendez R, Allain FH-T (2014) "A fly trap mechanism provides sequence-specific RNA recognition by CPEB proteins." Genes Dev., 28, 1498-1514. doi: 10.1101/gad.241133.114. Structural model of tandem rrm domains of cytoplasmic polyadenylation element binding protein 1 (cpeb1) in complex with RNA. SNAP output
2mkn RNA binding protein-RNA NMR Burge RG, Martinez-Yamout MA, Dyson HJ, Wright PE (2014) "Structural Characterization of Interactions between the Double-Stranded RNA-Binding Zinc Finger Protein JAZ and Nucleic Acids." Biochemistry, 53, 1495-1510. doi: 10.1021/bi401675h. Structural characterization of interactions between the double-stranded RNA-binding zinc finger protein jaz and dsrna. SNAP output
2mqo RNA binding protein-RNA NMR Blatter M, Allain F "Structural Investigation of hnRNP L bound to RNA." Structural investigation of hnrnp l bound to RNA. SNAP output
2mqp RNA binding protein-RNA NMR Blatter M, Allain F "Structural Investigation of hnRNP L bound to RNA." Structural investigation of hnrnp l bound to RNA. SNAP output
2mqq RNA binding protein-RNA NMR Blatter M, Allain F "Structural Investigation of hnRNP L bound to RNA." Structural investigation of hnrnp l bound to RNA. SNAP output
2mqv viral protein-RNA NMR Miller SB, Yildiz FZ, Lo JA, Wang B, D'Souza VM (2014) "A structure-based mechanism for tRNA and retroviral RNA remodelling during primer annealing." Nature, 515, 591-595. doi: 10.1038/nature13709. Solution NMR structure of the u5-primer binding site (u5-pbs) domain of murine leukemia virus RNA genome bound to the retroviral nucleocapsid protein. SNAP output
2ms0 viral protein-RNA NMR Miller SB, Yildiz FZ, Lo JA, Wang B, D'Souza VM (2014) "A structure-based mechanism for tRNA and retroviral RNA remodelling during primer annealing." Nature, 515, 591-595. doi: 10.1038/nature13709. Solution NMR structure pf trnapro:mlv-nucleocapsid (1:2) complex. SNAP output
2ms1 viral protein-RNA NMR Miller SB, Yildiz FZ, Lo JA, Wang B, D'Souza VM (2014) "A structure-based mechanism for tRNA and retroviral RNA remodelling during primer annealing." Nature, 515, 591-595. doi: 10.1038/nature13709. Solution NMR structure of trnapro:mlv nucleocapsid protein (1:1) complex. SNAP output
2mtv RNA binding protein-RNA NMR Theler D, Dominguez C, Blatter M, Boudet J, Allain FH (2014) "Solution structure of the YTH domain in complex with N6-methyladenosine RNA: a reader of methylated RNA." Nucleic Acids Res., 42, 13911-13919. doi: 10.1093/nar/gku1116. Solution structure of the yth domain of yt521-b in complex with n6-methyladenosine containing RNA. SNAP output
2mxy RNA binding protein-RNA NMR Cienikova Z, Damberger FF, Hall J, Allain FH, Maris C (2014) "Structural and mechanistic insights into poly(uridine) tract recognition by the hnRNP C RNA recognition motif." J.Am.Chem.Soc., 136, 14536-14544. doi: 10.1021/ja507690d. Solution structure of hnrnp c rrm in complex with 5'-auuuuuc-3' RNA. SNAP output
2mz1 RNA binding protein-RNA NMR Cienikova Z, Damberger FF, Hall J, Allain FH, Maris C (2014) "Structural and mechanistic insights into poly(uridine) tract recognition by the hnRNP C RNA recognition motif." J.Am.Chem.Soc., 136, 14536-14544. doi: 10.1021/ja507690d. Solution structure of hnrnp c rrm in complex with 5'-uuuuc-3' RNA. SNAP output
2n3o RNA binding protein-RNA NMR Maris C, Jayne SF, Damberger FF, Ravindranathan S, Allain FH-T "C-terminal helix folding upon pyrimidine-rich hairpin binding to PTB RRM1. Implications for PTB function in Encephalomyocarditis virus IRES activity." Structure of ptb rrm1(41-163) bound to an RNA stemloop containing a structured loop derived from viral internal ribosomal entry site RNA. SNAP output
2n7c RNA binding protein-RNA NMR Ganguly AK, Verma G, Bhavesh NS (2019) "The N-terminal RNA Recognition Motif of PfSR1 Confers Semi-specificity for Pyrimidines during RNA Recognition." J. Mol. Biol., 431, 498-510. doi: 10.1016/j.jmb.2018.11.020. Solution structure of plasmodium falciparum sr1-rrm1 in complex with acauca RNA. SNAP output
2n82 RNA binding protein-RNA NMR Chen Y, Zubovic L, Yang F, Godin K, Pavelitz T, Castellanos J, Macchi P, Varani G (2016) "Rbfox proteins regulate microRNA biogenesis by sequence-specific binding to their precursors and target downstream Dicer." Nucleic Acids Res., 44, 4381-4395. doi: 10.1093/nar/gkw177. Solution structure of the complex of microrna 20b pre-element with rbfox rrm. SNAP output
2n8l RNA binding protein-RNA NMR Nicastro G, Candel AM, Ramos A, Hollingworth D "Zipcode-binding-protein-1 KH3KH4(DD) domains in complex with the RNA target GCACACCC." Zipcode-binding-protein-1 kh3kh4(dd) domains in complex with the kh3 RNA target. SNAP output
2n8m RNA binding protein-RNA NMR Nicastro G, Ramos A, Candel A, Hollingworth D "Zipcode-binding-protein-1 KH3(DD)KH4 domains in complex with the RNA target UCGGACU." Zipcode-binding-protein-1 kh3(dd)kh4 domains in complex with the kh4 RNA target. SNAP output
2noq ribosome cryo-EM (7.3 Å) Schuler M, Connell SR, Lescoute A, Giesebrecht J, Dabrowski M, Schroeer B, Mielke T, Penczek PA, Westhof E, Spahn CM (2006) "Structure of the ribosome-bound cricket paralysis virus IRES RNA." Nat.Struct.Mol.Biol., 13, 1092-1096. doi: 10.1038/nsmb1177. Structure of ribosome-bound cricket paralysis virus ires RNA. SNAP output
2nqp isomerase-RNA X-ray (3.5 Å) Hur S, Stroud RM (2007) "How U38, 39, and 40 of Many tRNAs Become the Targets for Pseudouridylation by TruA." Mol.Cell, 26, 189-203. doi: 10.1016/j.molcel.2007.02.027. Crystal structure of pseudoudirinde synthase trua in complex with leucyl trna. SNAP output
2nr0 isomerase-RNA X-ray (3.9 Å) Hur S, Stroud RM (2007) "How U38, 39, and 40 of Many tRNAs Become the Targets for Pseudouridylation by TruA." Mol.Cell, 26, 189-203. doi: 10.1016/j.molcel.2007.02.027. Crystal structure of pseudoudirinde synthase trua in complex with leucyl trna. SNAP output
2nre isomerase-RNA X-ray (4.0 Å) Hur S, Stroud RM (2007) "How U38, 39, and 40 of Many tRNAs Become the Targets for Pseudouridylation by TruA." Mol.Cell, 26, 189-203. doi: 10.1016/j.molcel.2007.02.027. Crystal structure of pseudoudirinde synthase trua in complex with leucyl trna. SNAP output
2nue hydrolase-RNA X-ray (2.9 Å) Gan J, Shaw G, Tropea JE, Waugh DS, Court DL, Ji X (2007) "A stepwise model for double-stranded RNA processing by ribonuclease III." Mol.Microbiol., 67, 143-154. doi: 10.1111/j.1365-2958.2007.06032.x. Crystal structure of rnase iii from aquifex aeolicus complexed with ds-RNA at 2.9-angstrom resolution. SNAP output
2nuf hydrolase-RNA X-ray (2.5 Å) Gan J, Shaw G, Tropea JE, Waugh DS, Court DL, Ji X (2007) "A stepwise model for double-stranded RNA processing by ribonuclease III." Mol.Microbiol., 67, 143-154. doi: 10.1111/j.1365-2958.2007.06032.x. Crystal structure of rnase iii from aquifex aeolicus complexed with ds-RNA at 2.5-angstrom resolution. SNAP output
2nug hydrolase-RNA X-ray (1.7 Å) Gan J, Shaw G, Tropea JE, Waugh DS, Court DL, Ji X (2007) "A stepwise model for double-stranded RNA processing by ribonuclease III." Mol.Microbiol., 67, 143-154. doi: 10.1111/j.1365-2958.2007.06032.x. Crystal structure of rnase iii from aquifex aeolicus complexed with ds-RNA at 1.7-angstrom resolution. SNAP output
2nz4 structural protein-RNA X-ray (2.498 Å) Cochrane JC, Lipchock SV, Strobel SA (2007) "Structural Investigation of the GlmS Ribozyme Bound to Its Catalytic Cofactor." Chem.Biol., 14, 97-105. doi: 10.1016/j.chembiol.2006.12.005. Structural investigation of the glms ribozyme bound to its catalytic cofactor. SNAP output
2ogm ribosome X-ray (3.5 Å) Davidovich C, Bashan A, Auerbach-Nevo T, Yaggie RD, Gontarek RR, Yonath A (2007) "Induced-fit tightens pleuromutilins binding to ribosomes and remote interactions enable their selectivity." Proc.Natl.Acad.Sci.Usa, 104, 4291-4296. doi: 10.1073/pnas.0700041104. The crystal structure of the large ribosomal subunit from deinococcus radiodurans complexed with the pleuromutilin derivative sb-571519. SNAP output
2oih structural protein-RNA X-ray (2.4 Å) Ke A, Ding F, Batchelor JD, Doudna JA (2007) "Structural roles of monovalent cations in the HDV ribozyme." Structure, 15, 281-287. doi: 10.1016/j.str.2007.01.017. Hepatitis delta virus gemonic ribozyme precursor with c75u mutation and bound to monovalent cation tl+. SNAP output
2oj3 structural protein-RNA X-ray (2.9 Å) Ke A, Ding F, Batchelor JD, Doudna JA (2007) "Structural roles of monovalent cations in the HDV ribozyme." Structure, 15, 281-287. doi: 10.1016/j.str.2007.01.017. Hepatitis delta virus ribozyme precursor structure, with c75u mutation, bound to tl+ and cobalt hexammine (co(nh3)63+). SNAP output
2om3 virus cryo-EM (4.4 Å) Sachse C, Chen JZ, Coureux PD, Stroupe ME, Fandrich M, Grigorieff N (2007) "High-resolution electron microscopy of helical specimens: a fresh look at tobacco mosaic virus." J.Mol.Biol., 371, 812-835. doi: 10.1016/j.jmb.2007.05.088. High-resolution cryo-EM structure of tobacco mosaic virus. SNAP output
2om7 ribosome cryo-EM (7.3 Å) Connell SR, Takemoto C, Wilson DN, Wang H, Murayama K, Terada T, Shirouzu M, Rost M, Schuler M, Giesebrecht J, Dabrowski M, Mielke T, Fucini P, Yokoyama S, Spahn CM (2007) "Structural basis for interaction of the ribosome with the switch regions of GTP-bound elongation factors." Mol.Cell, 25, 751-764. doi: 10.1016/j.molcel.2007.01.027. Structural basis for interaction of the ribosome with the switch regions of gtp-bound elongation factors. SNAP output
2otj ribosome X-ray (2.9 Å) Schroeder SJ, Blaha G, Tirado-Rives J, Steitz TA, Moore PB (2007) "The Structures of Antibiotics Bound to the E Site Region of the 50 S Ribosomal Subunit of Haloarcula marismortui: 13-Deoxytedanolide and Girodazole." J.Mol.Biol., 367, 1471-1479. doi: 10.1016/j.jmb.2007.01.081. 13-deoxytedanolide bound to the large subunit of haloarcula marismortui. SNAP output
2otl ribosome X-ray (2.7 Å) Schroeder SJ, Blaha G, Tirado-Rives J, Steitz TA, Moore PB (2007) "The Structures of Antibiotics Bound to the E Site Region of the 50 S Ribosomal Subunit of Haloarcula marismortui: 13-Deoxytedanolide and Girodazole." J.Mol.Biol., 367, 1471-1479. doi: 10.1016/j.jmb.2007.01.081. Girodazole bound to the large subunit of haloarcula marismortui. SNAP output
2ozb RNA binding protein-RNA X-ray (2.6 Å) Liu S, Li P, Dybkov O, Nottrott S, Hartmuth K, Luhrmann R, Carlomagno T, Wahl MC (2007) "Binding of the human Prp31 Nop domain to a composite RNA-protein platform in U4 snRNP." Science, 316, 115-120. doi: 10.1126/science.1137924. Structure of a human prp31-15.5k-u4 snrna complex. SNAP output
2pjp translation-RNA X-ray (2.3 Å) Soler N, Fourmy D, Yoshizawa S (2007) "Structural insight into a molecular switch in tandem winged-helix motifs from elongation factor SelB." J.Mol.Biol., 370, 728-741. doi: 10.1016/j.jmb.2007.05.001. Structure of the mrna-binding domain of elongation factor selb from e.coli in complex with secis RNA. SNAP output
2ply translation-RNA X-ray (2.6 Å) Soler N, Fourmy D, Yoshizawa S (2007) "Structural insight into a molecular switch in tandem winged-helix motifs from elongation factor SelB." J.Mol.Biol., 370, 728-741. doi: 10.1016/j.jmb.2007.05.001. Structure of the mrna binding fragment of elongation factor selb in complex with secis RNA.. SNAP output
2po1 hydrolase-hydrolase-RNA X-ray (1.94 Å) Navarro MVAS, Oliveira CC, Zanchin NI, Guimaraes BG (2008) "Insights into the mechanism of progressive RNA degradation by the archaeal exosome." J.Biol.Chem., 283, 14120-14131. doi: 10.1074/jbc.M801005200. Crystal structure of the p. abyssi exosome rnase ph ring complexed with a single stranded 10-mer poly(a) RNA. SNAP output
2pxb signaling protein-RNA X-ray (2.5 Å) Keel AY, Rambo RP, Batey RT, Kieft JS (2007) "A General Strategy to Solve the Phase Problem in RNA Crystallography." Structure, 15, 761-772. doi: 10.1016/j.str.2007.06.003. Variant 2 of ribonucleoprotein core of the e. coli signal recognition particle. SNAP output
2pxd signaling protein-RNA X-ray (2.0 Å) Keel AY, Rambo RP, Batey RT, Kieft JS (2007) "A General Strategy to Solve the Phase Problem in RNA Crystallography." Structure, 15, 761-772. doi: 10.1016/j.str.2007.06.003. Variant 1 of ribonucleoprotein core of the e. coli signal recognition particle. SNAP output
2pxe signaling protein-RNA X-ray (2.0 Å) Keel AY, Rambo RP, Batey RT, Kieft JS (2007) "A General Strategy to Solve the Phase Problem in RNA Crystallography." Structure, 15, 761-772. doi: 10.1016/j.str.2007.06.003. Variant 4 of ribonucleoprotein core of the e. coli signal recognition particle. SNAP output
2pxf signaling protein-RNA X-ray (2.0 Å) Keel AY, Rambo RP, Batey RT, Kieft JS (2007) "A General Strategy to Solve the Phase Problem in RNA Crystallography." Structure, 15, 761-772. doi: 10.1016/j.str.2007.06.003. Variant 5 of ribonucleoprotein core of the e. coli signal recognition particle. SNAP output
2pxk signaling protein-RNA X-ray (2.5 Å) Keel AY, Rambo RP, Batey RT, Kieft JS (2007) "A General Strategy to Solve the Phase Problem in RNA Crystallography." Structure, 15, 761-772. doi: 10.1016/j.str.2007.06.003. Variant 8 of ribonucleoprotein core of the e. coli signal recognition particle. SNAP output
2pxl signaling protein-RNA X-ray (2.5 Å) Keel AY, Rambo RP, Batey RT, Kieft JS (2007) "A General Strategy to Solve the Phase Problem in RNA Crystallography." Structure, 15, 761-772. doi: 10.1016/j.str.2007.06.003. Variant 9 of ribonucleoprotein core of the e. coli signal recognition particle. SNAP output
2pxp signaling protein-RNA X-ray (2.5 Å) Keel AY, Rambo RP, Batey RT, Kieft JS (2007) "A General Strategy to Solve the Phase Problem in RNA Crystallography." Structure, 15, 761-772. doi: 10.1016/j.str.2007.06.003. Variant 13 of ribonucleoprotein core of the e. coli signal recognition particle. SNAP output
2pxq signaling protein-RNA X-ray (2.5 Å) Keel AY, Rambo RP, Batey RT, Kieft JS (2007) "A General Strategy to Solve the Phase Problem in RNA Crystallography." Structure, 15, 761-772. doi: 10.1016/j.str.2007.06.003. Variant 14 of ribonucleoprotein core of the e. coli signal recognition particle. SNAP output
2pxt signaling protein-RNA X-ray (2.5 Å) Keel AY, Rambo RP, Batey RT, Kieft JS (2007) "A General Strategy to Solve the Phase Problem in RNA Crystallography." Structure, 15, 761-772. doi: 10.1016/j.str.2007.06.003. Variant 15 of ribonucleoprotein core of the e. coli signal recognition particle. SNAP output
2pxu signaling protein-RNA X-ray (2.5 Å) Keel AY, Rambo RP, Batey RT, Kieft JS (2007) "A General Strategy to Solve the Phase Problem in RNA Crystallography." Structure, 15, 761-772. doi: 10.1016/j.str.2007.06.003. Variant 16 of ribonucleoprotein core of the e. coli signal recognition particle. SNAP output
2pxv signaling protein-RNA X-ray (2.0 Å) Keel AY, Rambo RP, Batey RT, Kieft JS (2007) "A General Strategy to Solve the Phase Problem in RNA Crystallography." Structure, 15, 761-772. doi: 10.1016/j.str.2007.06.003. Variant 6 of ribonucleoprotein core of the e. coli signal recognition particle. SNAP output
2py9 RNA and DNA binding protein-RNA X-ray (2.56 Å) Du Z, Lee JK, Fenn S, Tjhen R, Stroud RM, James TL (2007) "X-ray crystallographic and NMR studies of protein-protein and protein-nucleic acid interactions involving the KH domains from human poly(C)-binding protein-2." Rna, 13, 1043-1051. doi: 10.1261/rna.410107. Protein-RNA interaction involving kh1 domain from human poly(c)-binding protein-2. SNAP output
2q66 transferase-RNA X-ray (1.8 Å) Balbo PB, Bohm A (2007) "Mechanism of poly(A) polymerase: structure of the enzyme-MgATP-RNA ternary complex and kinetic analysis." Structure, 15, 1117-1131. doi: 10.1016/j.str.2007.07.010. Structure of yeast poly(a) polymerase with atp and oligo(a). SNAP output
2qa4 ribosome X-ray (3.0 Å) Kavran JM, Steitz TA (2007) "Structure of the base of the L7/L12 stalk of the Haloarcula marismortui large ribosomal subunit: Analysis of L11 movements." J.Mol.Biol., 371, 1047-1059. doi: 10.1016/j.jmb.2007.05.091. A more complete structure of the the l7-l12 stalk of the haloarcula marismortui 50s large ribosomal subunit. SNAP output
2qex ribosome X-ray (2.9 Å) Schroeder SJ, Blaha G, Moore PB (2007) "Negamycin binds to the wall of the nascent chain exit tunnel of the 50S ribosomal subunit." Antimicrob.Agents Chemother., 51, 4462-4465. doi: 10.1128/AAC.00455-07. Negamycin binds to the wall of the nascent chain exit tunnel of the 50s ribosomal subunit. SNAP output
2qqp virus X-ray (3.8 Å) Speir JA, Taylor DJ, Natarajan P, Pringle FM, Ball LA, Johnson JE (2010) "Evolution in action: N and C termini of subunits in related T = 4 viruses exchange roles as molecular switches." Structure, 18, 700-709. doi: 10.1016/j.str.2010.03.010. Crystal structure of authentic providence virus. SNAP output
2qux structural protein-RNA X-ray (2.44 Å) Chao JA, Patskovsky Y, Almo SC, Singer RH (2008) "Structural basis for the coevolution of a viral RNA-protein complex." Nat.Struct.Mol.Biol., 15, 103-105. doi: 10.1038/nsmb1327. Pp7 coat protein dimer in complex with RNA hairpin. SNAP output
2r7r transferase-RNA X-ray (2.6 Å) Lu X, McDonald SM, Tortorici MA, Tao YJ, Vasquez-Del Carpio R, Nibert ML, Patton JT, Harrison SC (2008) "Mechanism for coordinated RNA packaging and genome replication by rotavirus polymerase VP1." Structure, 16, 1678-1688. doi: 10.1016/j.str.2008.09.006. Crystal structure of rotavirus sa11 vp1-RNA (ugugacc) complex. SNAP output
2r7s transferase-RNA X-ray (3.24 Å) Lu X, McDonald SM, Tortorici MA, Tao YJ, Vasquez-Del Carpio R, Nibert ML, Patton JT, Harrison SC (2008) "Mechanism for coordinated RNA packaging and genome replication by rotavirus polymerase VP1." Structure, 16, 1678-1688. doi: 10.1016/j.str.2008.09.006. Crystal structure of rotavirus sa11 vp1 - RNA (ugugcc) complex. SNAP output
2r7t transferase-RNA X-ray (3.0 Å) Lu X, McDonald SM, Tortorici MA, Tao YJ, Vasquez-Del Carpio R, Nibert ML, Patton JT, Harrison SC (2008) "Mechanism for coordinated RNA packaging and genome replication by rotavirus polymerase VP1." Structure, 16, 1678-1688. doi: 10.1016/j.str.2008.09.006. Crystal structure of rotavirus sa11 vp1-RNA (ugugaacc) complex. SNAP output
2r7u transferase-RNA X-ray (3.1 Å) Lu X, McDonald SM, Tortorici MA, Tao YJ, Vasquez-Del Carpio R, Nibert ML, Patton JT, Harrison SC (2008) "Mechanism for coordinated RNA packaging and genome replication by rotavirus polymerase VP1." Structure, 16, 1678-1688. doi: 10.1016/j.str.2008.09.006. Crystal structure of rotavirus sa11 vp1-RNA (aaaagcc) complex. SNAP output
2r7v transferase-RNA X-ray (2.8 Å) Lu X, McDonald SM, Tortorici MA, Tao YJ, Vasquez-Del Carpio R, Nibert ML, Patton JT, Harrison SC (2008) "Mechanism for coordinated RNA packaging and genome replication by rotavirus polymerase VP1." Structure, 16, 1678-1688. doi: 10.1016/j.str.2008.09.006. Crystal structure of rotavirus sa11 vp1-RNA (ggcuuu) complex. SNAP output
2r7w transferase-RNA X-ray (2.6 Å) Lu X, McDonald SM, Tortorici MA, Tao YJ, Vasquez-Del Carpio R, Nibert ML, Patton JT, Harrison SC (2008) "Mechanism for coordinated RNA packaging and genome replication by rotavirus polymerase VP1." Structure, 16, 1678-1688. doi: 10.1016/j.str.2008.09.006. Crystal structure of rotavirus sa11 vp1-RNA (ugugacc)-mrna 5'-cap (m7gpppg) complex. SNAP output
2r7x transferase-RNA X-ray (2.8 Å) Lu X, McDonald SM, Tortorici MA, Tao YJ, Vasquez-Del Carpio R, Nibert ML, Patton JT, Harrison SC (2008) "Mechanism for coordinated RNA packaging and genome replication by rotavirus polymerase VP1." Structure, 16, 1678-1688. doi: 10.1016/j.str.2008.09.006. Crystal structure of rotavirus sa11 vp1-RNA (ugugacc)-gtp complex. SNAP output
2r8s immune system-RNA X-ray (1.95 Å) Ye JD, Tereshko V, Frederiksen JK, Koide A, Fellouse FA, Sidhu SS, Koide S, Kossiakoff AA, Piccirilli JA (2008) "Synthetic antibodies for specific recognition and crystallization of structured RNA." Proc.Natl.Acad.Sci.Usa, 105, 82-87. doi: 10.1073/pnas.0709082105. High resolution structure of a specific synthetic fab bound to p4-p6 RNA ribozyme domain. SNAP output
2r92 transferase-RNA X-ray (3.8 Å) Lehmann E, Brueckner F, Cramer P (2007) "Molecular basis of RNA-dependent RNA polymerase II activity." Nature, 450, 445-449. doi: 10.1038/nature06290. Elongation complex of RNA polymerase ii with artificial rdrp scaffold. SNAP output
2r93 transferase-RNA X-ray (4.0 Å) Lehmann E, Brueckner F, Cramer P (2007) "Molecular basis of RNA-dependent RNA polymerase II activity." Nature, 450, 445-449. doi: 10.1038/nature06290. Elongation complex of RNA polymerase ii with a hepatitis delta virus-derived RNA stem loop. SNAP output
2rd2 ligase-RNA X-ray (2.6 Å) Bullock TL, Rodriguez-Hernandez A, Corigliano EM, Perona JJ (2008) "A rationally engineered misacylating aminoacyl-tRNA synthetase." Proc.Natl.Acad.Sci.Usa, 105, 7428-7433. doi: 10.1073/pnas.0711812105. Glutaminyl-trna synthetase mutant c229r with bound analog 5'-o-[n-(l-glutaminyl)-sulfamoyl]adenosine. SNAP output
2re8 ligase-RNA X-ray (2.6 Å) Bullock TL, Rodriguez-Hernandez A, Corigliano EM, Perona JJ (2008) "A rationally engineered misacylating aminoacyl-tRNA synthetase." Proc.Natl.Acad.Sci.Usa, 105, 7428-7433. doi: 10.1073/pnas.0711812105. Glutaminyl-trna synthetase mutant c229r with bound analog 5'-o-[n-(l-glutamyl)-sulfamoyl]adenosine. SNAP output
2rfk isomerase-RNA X-ray (2.87 Å) Liang B, Xue S, Terns RM, Terns MP, Li H (2007) "Substrate RNA positioning in the archaeal H/ACA ribonucleoprotein complex." Nat.Struct.Mol.Biol., 14, 1189-1195. doi: 10.1038/nsmb1336. Substrate RNA positioning in the archaeal h-aca ribonucleoprotein complex. SNAP output
2rkj ligase-RNA X-ray (4.5 Å) Paukstelis PJ, Chen JH, Chase E, Lambowitz AM, Golden BL (2008) "Structure of a tyrosyl-tRNA synthetase splicing factor bound to a group I intron RNA." Nature, 451, 94-97. doi: 10.1038/nature06413. Cocrystal structure of a tyrosyl-trna synthetase splicing factor with a group i intron RNA. SNAP output
2rqc transcription-RNA NMR Tsuda K, Kuwasako K, Takahashi M, Someya T, Inoue M, Terada T, Kobayashi N, Shirouzu M, Kigawa T, Tanaka A, Sugano S, Guntert P, Muto Y, Yokoyama S (2009) "Structural basis for the sequence-specific RNA-recognition mechanism of human CUG-BP1 RRM3." Nucleic Acids Res., 37, 5151-5166. doi: 10.1093/nar/gkp546. Solution structure of RNA-binding domain 3 of cugbp1 in complex with RNA (ug)3. SNAP output
2rra RNA binding protein-RNA NMR Tsuda K, Someya T, Kuwasako K, Takahashi M, He F, Unzai S, Inoue M, Harada T, Watanabe S, Terada T, Kobayashi N, Shirouzu M, Kigawa T, Tanaka A, Sugano S, Guntert P, Yokoyama S, Muto Y (2011) "Structural basis for the dual RNA-recognition modes of human Tra2-beta RRM." Nucleic Acids Res., 39, 1538-1553. doi: 10.1093/nar/gkq854. Solution structure of RNA binding domain in human tra2 beta protein in complex with RNA (gaagaa). SNAP output
2rs2 RNA binding protein-RNA NMR Ohyama T, Nagata T, Tsuda K, Kobayashi N, Imai T, Okano H, Yamazaki T, Katahira M (2011) "Structure of Musashi1 in a complex with target RNA: the role of aromatic stacking interactions." Nucleic Acids Res. doi: 10.1093/nar/gkr1139. 1h, 13c, and 15n chemical shift assignments for musashi1 rbd1:r(guagu) complex. SNAP output
2rsk membrane protein-RNA NMR Mashima T, Nishikawa F, Kamatari YO, Fujiwara H, Saimura M, Nagata T, Kodaki T, Nishikawa S, Kuwata K, Katahira M (2013) "Anti-prion activity of an RNA aptamer and its structural basis." Nucleic Acids Res., 41, 1355-1362. doi: 10.1093/nar/gks1132. RNA aptamer against prion protein in complex with the partial binding peptide. SNAP output
2ru3 RNA binding protein-RNA NMR Kuwasako K, Takahashi M, Unzai S, Tsuda K, Yoshikawa S, He F, Kobayashi N, Guntert P, Shirouzu M, Ito T, Tanaka A, Yokoyama S, Hagiwara M, Kuroyanagi H, Muto Y (2014) "RBFOX and SUP-12 sandwich a G base to cooperatively regulate tissue-specific splicing." Nat.Struct.Mol.Biol., 21, 778-786. doi: 10.1038/nsmb.2870. Solution structure of c.elegans sup-12 rrm in complex with RNA. SNAP output
2ru7 membrane protein-RNA NMR Hayashi T, Oshima H, Mashima T, Nagata T, Katahira M, Kinoshita M (2014) "Binding of an RNA aptamer and a partial peptide of a prion protein: crucial importance of water entropy in molecular recognition." Nucleic Acids Res. doi: 10.1093/nar/gku382. Refined structure of RNA aptamer in complex with the partial binding peptide of prion protein. SNAP output
2tmv virus-RNA fiber diffraction Namba K, Pattanayek R, Stubbs G (1989) "Visualization of protein-nucleic acid interactions in a virus. Refined structure of intact tobacco mosaic virus at 2.9 A resolution by X-ray fiber diffraction." J.Mol.Biol., 208, 307-325. doi: 10.1016/0022-2836(89)90391-4. Visualization of protein-nucleic acid interactions in a virus. refined structure of intact tobacco mosaic virus at 2.9 angstroms resolution by x-ray fiber diffraction. SNAP output
2uu9 ribosome X-ray (3.1 Å) Weixlbaumer A, Murphy 4th FV, Dziergowska A, Malkiewicz A, Vendeix FA, Agris PF, Ramakrishnan V (2007) "Mechanism for expanding the decoding capacity of transfer RNAs by modification of uridines." Nat. Struct. Mol. Biol., 14, 498-502. doi: 10.1038/nsmb1242. Structure of the thermus thermophilus 30s ribosomal subunit complexed with a valine-asl with cmo5u in position 34 bound to an mrna with a gug-codon in the a-site and paromomycin.. SNAP output
2uua ribosome X-ray (2.9 Å) Weixlbaumer A, Murphy 4th FV, Dziergowska A, Malkiewicz A, Vendeix FA, Agris PF, Ramakrishnan V (2007) "Mechanism for expanding the decoding capacity of transfer RNAs by modification of uridines." Nat. Struct. Mol. Biol., 14, 498-502. doi: 10.1038/nsmb1242. Structure of the thermus thermophilus 30s ribosomal subunit complexed with a valine-asl with cmo5u in position 34 bound to an mrna with a guc-codon in the a-site and paromomycin.. SNAP output
2uub ribosome X-ray (2.8 Å) Weixlbaumer A, Murphy FV, Dziergowska A, Malkiewicz A, Vendeix FAP, Agris PF, Ramakrishnan V (2007) "Mechanism for Expanding the Decoding Capacity of Transfer Rnas by Modification of Uridines." Nat.Struct.Mol.Biol., 14, 498. doi: 10.1038/NSMB1242. Structure of the thermus thermophilus 30s ribosomal subunit complexed with a valine-asl with cmo5u in position 34 bound to an mrna with a guu-codon in the a-site and paromomycin.. SNAP output
2uuc ribosome X-ray (3.1 Å) Weixlbaumer A, Murphy FV, Dziergowska A, Malkiewicz A, Vendeix FA, Agris PF, Ramakrishnan V (2007) "Mechanism for expanding the decoding capacity of transfer RNAs by modification of uridines." Nat. Struct. Mol. Biol., 14, 498-502. doi: 10.1038/nsmb1242. Structure of the thermus thermophilus 30s ribosomal subunit complexed with a valine-asl with cmo5u in position 34 bound to an mrna with a gua-codon in the a-site and paromomycin.. SNAP output
2uwm translation X-ray (2.31 Å) Ose T, Soler N, Rasubala L, Kuroki K, Kohda D, Fourmy D, Yoshizawa S, Maenaka K (2007) "Structural Basis for Dynamic Interdomain Movement and RNA Recognition of the Selenocysteine-Specific Elongation Factor Selb." Structure, 15, 577. doi: 10.1016/J.STR.2007.03.007. C-terminal domain(wh2-wh4) of elongation factor selb in complex with secis RNA. SNAP output
2uxb ribosome X-ray (3.1 Å) Dunham CM, Selmer M, Phelps SS, Kelley AC, Suzuki T, Joseph S, Ramakrishnan V (2007) "Structures of tRNAs with an expanded anticodon loop in the decoding center of the 30S ribosomal subunit." RNA, 13, 817-823. doi: 10.1261/rna.367307. Crystal structure of an extended trna anticodon stem loop in complex with its cognate mrna gggu in the context of the thermus thermophilus 30s subunit.. SNAP output
2uxc ribosome X-ray (2.9 Å) Dunham CM, Selmer M, Phelps SS, Kelley AC, Suzuki T, Joseph S, Ramakrishnan V (2007) "Structures of Trnas with an Expanded Anticodon Loop in the Decoding Center of the 30S Ribosomal Subunit." RNA, 13, 817. doi: 10.1261/RNA.367307. Crystal structure of an extended trna anticodon stem loop in complex with its cognate mrna ucgu in the context of the thermus thermophilus 30s subunit.. SNAP output
2uxd ribosome X-ray (3.2 Å) Dunham CM, Selmer M, Phelps SS, Kelley AC, Suzuki T, Joseph S, Ramakrishnan V (2007) "Structures of Trnas with an Expanded Anticodon Loop in the Decoding Center of the 30S Ribosomal Subunit." RNA, 13, 817. doi: 10.1261/RNA.367307. Crystal structure of an extended trna anticodon stem loop in complex with its cognate mrna cggg in the context of the thermus thermophilus 30s subunit.. SNAP output
2v0g ligase X-ray (3.5 Å) Rock F, Mao W, Yaremchuk A, Tukalo M, Crepin T, Zhou H, Zhang Y, Hernandez V, Akama T, Baker S, Plattner J, Shapiro L, Martinis SA, Benkovic SJ, Cusack S, Alley MRK (2007) "An Antifungal Agent Inhibits an Aminoacyl-tRNA Synthetase by Trapping tRNA in the Editing Site." Science, 316, 1759. doi: 10.1126/SCIENCE.1142189. Leucyl-trna synthetase from thermus thermophilus complexed with a trna(leu) transcript with 5-fluoro-1,3-dihydro-1-hydroxy-2,1- benzoxaborole (an2690) forming an adduct to the ribose of adenosine- 76 in the enzyme editing site.. SNAP output
2v3c signaling protein X-ray (2.5 Å) Hainzl T, Huang S, Sauer-Eriksson AE (2007) "Interaction of Signal-Recognition Particle 54 Gtpase Domain and Signal-Recognition Particle RNA in the Free Signal-Recognition Particle." Proc.Natl.Acad.Sci.USA, 104, 14911. doi: 10.1073/PNAS.0702467104. Crystal structure of the srp54-srp19-7s.s srp RNA complex of m. jannaschii. SNAP output
2vnu hydrolase-RNA X-ray (2.3 Å) Lorentzen E, Basquin J, Tomecki R, Dziembowski A, Conti E (2008) "Structure of the Active Subunit of the Yeast Exosome Core, Rrp44: Diverse Modes of Substrate Recruitment in the Rnase II Nuclease Family." Mol.Cell, 29, 717. doi: 10.1016/J.MOLCEL.2008.02.018. Crystal structure of sc rrp44. SNAP output
2vod RNA binding protein X-ray (2.1 Å) Kotik-Kogan O, Valentine ER, Sanfelice D, Conte MR, Curry S (2008) "Structural Analysis Reveals Conformational Plasticity in the Recognition of RNA 3' Ends by the Human La Protein." Structure, 16, 852. doi: 10.1016/J.STR.2008.02.021. Crystal structure of n-terminal domains of human la protein complexed with RNA oligomer auauuuu. SNAP output
2von RNA binding protein X-ray (2.1 Å) Kotik-Kogan O, Valentine ER, Sanfelice D, Conte MR, Curry S (2008) "Structural Analysis Reveals Conformational Plasticity in the Recognition of RNA 3' Ends by the Human La Protein." Structure, 16, 852. doi: 10.1016/J.STR.2008.02.021. Crystal structure of n-terminal domains of human la protein complexed with RNA oligomer auaauuu. SNAP output
2voo RNA binding protein X-ray (1.8 Å) Kotik-Kogan O, Valentine ER, Sanfelice D, Conte MR, Curry S (2008) "Structural Analysis Reveals Conformational Plasticity in the Recognition of RNA 3' Ends by the Human La Protein." Structure, 16, 852. doi: 10.1016/J.STR.2008.02.021. Crystal structure of n-terminal domains of human la protein complexed with RNA oligomer uuuuuuuu. SNAP output
2vop RNA binding protein X-ray (2.8 Å) Kotik-Kogan O, Valentine ER, Sanfelice D, Conte MR, Curry S (2008) "Structural Analysis Reveals Conformational Plasticity in the Recognition of RNA 3' Ends by the Human La Protein." Structure, 16, 852. doi: 10.1016/J.STR.2008.02.021. Crystal structure of n-terminal domains of human la protein complexed with RNA oligomer auuuu. SNAP output
2vpl translation X-ray (2.3 Å) Tishchenko S, Kljashtorny V, Kostareva O, Nevskaya N, Nikulin A, Gulak P, Piendl W, Garber M, Nikonov S (2008) "Domain II of Thermus thermophilus ribosomal protein L1 hinders recognition of its mRNA." J. Mol. Biol., 383, 301-305. doi: 10.1016/j.jmb.2008.08.058. The structure of the complex between the first domain of l1 protein from thermus thermophilus and mrna from methanococcus jannaschii. SNAP output
2vqe ribosome X-ray (2.5 Å) Kurata S, Weixlbaumer A, Ohtsuki T, Shimazaki T, Wada T, Kirino Y, Takai K, Watanabe K, Ramakrishnan V, Suzuki T (2008) "Modified Uridines with C5-Methylene Substituents at the First Position of the tRNA Anticodon Stabilize U.G Wobble Pairing During Decoding." J.Biol.Chem., 283, 18801. doi: 10.1074/JBC.M800233200. Modified uridines with c5-methylene substituents at the first position of the trna anticodon stabilize u-g wobble pairing during decoding. SNAP output
2vqf ribosome X-ray (2.9 Å) Kurata S, Weixlbaumer A, Ohtsuki T, Shimazaki T, Wada T, Kirino Y, Takai K, Watanabe K, Ramakrishnan V, Suzuki T (2008) "Modified Uridines with C5-Methylene Substituents at the First Position of the tRNA Anticodon Stabilize U.G Wobble Pairing During Decoding." J.Biol.Chem., 283, 18801. doi: 10.1074/JBC.M800233200. Modified uridines with c5-methylene substituents at the first position of the trna anticodon stabilize u-g wobble pairing during decoding. SNAP output
2vrt hydrolase X-ray (3.5 Å) Koslover DJ, Callaghan AJ, Marcaida MJ, Garman EF, Martick M, Scott WG, Luisi BF (2008) "The Crystal Structure of the Escherichia Coli Rnase E Apoprotein and a Mechanism for RNA Degradation." Structure, 16, 1238. doi: 10.1016/J.STR.2008.04.017. Crystal structure of e. coli rnase e possessing m1 RNA fragments - catalytic domain. SNAP output
2w2h RNA binding protein X-ray (3.25 Å) Anand K, Schulte A, Vogel-Bachmayr K, Scheffzek K, Geyer M (2008) "Structural Insights Into the Cyclin T1-Tat-Tar RNA Transcription Activation Complex from Eiav." Nat.Struct.Mol.Biol., 15, 1287. doi: 10.1038/NSMB.1513. Structural basis of transcription activation by the cyclin t1-tat-tar RNA complex from eiav. SNAP output
2wj8 RNA binding protein-RNA X-ray (3.29 Å) Tawar RG, Duquerroy S, Vonrhein C, Varela PF, Damier-Piolle L, Castagne N, Maclellan K, Bedouelle H, Bricogne G, Bhella D, Eleouet J, Rey FA (2009) "Crystal Structure of a Nucleocapsid-Like Nucleoprotein-RNA Complex of Respiratory Syncytial Virus." Science, 326, 1279. doi: 10.1126/SCIENCE.1177634. Respiratory syncitial virus ribonucleoprotein. SNAP output
2ww9 ribosome cryo-EM (8.6 Å) Becker T, Bhushan S, Jarasch A, Armache JP, Funes S, Jossinet F, Gumbart J, Mielke T, Berninghausen O, Schulten K, Westhof E, Gilmore R, Mandon E, Beckmann R (2009) "Structure of Monomeric Yeast and Mammalian Sec61 Complexes Interacting with the Translating Ribosome." Science, 326, 1369. doi: 10.1126/SCIENCE.1178535. cryo-EM structure of the active yeast ssh1 complex bound to the yeast 80s ribosome. SNAP output
2wwa ribosome cryo-EM (8.9 Å) Becker T, Bhushan S, Jarasch A, Armache JP, Funes S, Jossinet F, Gumbart J, Mielke T, Berninghausen O, Schulten K, Westhof E, Gilmore R, Mandon E, Beckmann R (2009) "Structure of Monomeric Yeast and Mammalian Sec61 Complexes Interacting with the Translating Ribosome." Science, 326, 1369. doi: 10.1126/SCIENCE.1178535. cryo-EM structure of idle yeast ssh1 complex bound to the yeast 80s ribosome. SNAP output
2wwb ribosome cryo-EM (6.48 Å) Becker T, Bhushan S, Jarasch A, Armache JP, Funes S, Jossinet F, Gumbart J, Mielke T, Berninghausen O, Schulten K, Westhof E, Gilmore R, Mandon E, Beckmann R (2009) "Structure of Monomeric Yeast and Mammalian Sec61 Complexes Interacting with the Translating Ribosome." Science, 326, 1369. doi: 10.1126/SCIENCE.1178535. cryo-EM structure of the mammalian sec61 complex bound to the actively translating wheat germ 80s ribosome. SNAP output
2wyy virus cryo-EM (10.0 Å) Ge P, Tsao J, Schein S, Green TJ, Luo M, Zhou ZH (2010) "Cryo-Em Model of the Bullet-Shaped Vesicular Stomatitis Virus." Science, 327, 689. doi: 10.1126/SCIENCE.1181766. Cryoem model of the vesicular stomatitis virus. SNAP output
2x1a transcription-RNA X-ray (2.05 Å) Pancevac C, Goldstone DC, Ramos A, Taylor IA (2010) "Structure of the RNA15 Rrm-RNA Complex Reveals the Molecular Basis of Gu Specificity in Transcriptional 3-End Processing Factors." Nucleic Acids Res., 38, 3119. doi: 10.1093/NAR/GKQ002. Structure of rna15 rrm with RNA bound (g). SNAP output
2x1f transcription-RNA X-ray (1.6 Å) Pancevac C, Goldstone DC, Ramos A, Taylor IA (2010) "Structure of the RNA15 Rrm-RNA Complex Reveals the Molecular Basis of Gu Specificity in Transcriptional 3-End Processing Factors." Nucleic Acids Res., 38, 3119. doi: 10.1093/NAR/GKQ002. Structure of rna15 rrm with bound RNA (gu). SNAP output
2x7n ribosomal protein-RNA cryo-EM (11.8 Å) Gartmann M, Blau M, Armache J-P, Mielke T, Topf M, Beckmann R (2010) "Mechanism of Eif6-Mediated Inhibition of Ribosomal Subunit Joining." J.Biol.Chem., 285, 14848. doi: 10.1074/JBC.C109.096057. Mechanism of eif6s anti-association activity. SNAP output
2xb2 hydrolase X-ray (3.4 Å) Buchwald G, Ebert J, Basquin C, Sauliere J, Jayachandran U, Bono F, Le Hir H, Conti E (2010) "Insights Into the Recruitment of the Nmd Machinery from the Crystal Structure of a Core Ejc-Upf3B Complex." Proc.Natl.Acad.Sci.USA, 107, 10050. doi: 10.1073/PNAS.1000993107. Crystal structure of the core mago-y14-eif4aiii-barentsz-upf3b assembly shows how the ejc is bridged to the nmd machinery. SNAP output
2xbm RNA binding protein X-ray (2.9 Å) Yap LJ, Luo DH, Chung KY, Lim SP, Bodenreider C, Noble C, Shi PY, Lescar J (2010) "Crystal Structure of the Dengue Virus Methyltransferase Bound to a 5'-Capped Octameric RNA." Plos One, 5, 12836. doi: 10.1371/JOURNAL.PONE.0012836. Crystal structure of the dengue virus methyltransferase bound to a 5'- capped octameric RNA. SNAP output
2xc7 RNA binding protein NMR Mourao A, Varrot A, Mackereth CD, Cusack S, Sattler M (2010) "Structure and RNA Recognition by the Snrna and Snorna Transport Factor Phax." RNA, 16, 1205. doi: 10.1261/RNA.2009910. Solution structure of phax-rbd in complex with ssrna. SNAP output
2xd0 toxin-RNA X-ray (3.0 Å) Blower TR, Pei XY, Short FL, Fineran PC, Humphreys DP, Luisi BF, Salmond GP (2011) "A processed noncoding RNA regulates an altruistic bacterial antiviral system." Nat. Struct. Mol. Biol., 18, 185-190. doi: 10.1038/nsmb.1981. A processed non-coding RNA regulates a bacterial antiviral system. SNAP output
2xdb toxin-RNA X-ray (2.55 Å) Blower TR, Pei XY, Short FL, Fineran PC, Humphreys DP, Luisi BF, Salmond GPC (2011) "A Processed Noncoding RNA Regulates an Altruistic Bacterial Antiviral System." Nat.Struct.Mol.Biol., 18, 185. doi: 10.1038/NSMB.1981. A processed non-coding RNA regulates a bacterial antiviral system. SNAP output
2xdd toxin-RNA X-ray (3.2 Å) Fineran PC, Blower TR, Foulds IJ, Humphreys DP, Lilley KS, Salmond GPC (2009) "The Phage Abortive Infection System, Toxin, Functions as a Protein-RNA Toxin-Antitoxin Pair." Proc.Natl.Acad.Sci.USA, 106, 894. doi: 10.1073/PNAS.0808832106. A processed non-coding RNA regulates a bacterial antiviral system. SNAP output
2xea virus cryo-EM (4.6 Å) Clare DK, Orlova EV (2010) "4.6 A Cryo-Em Reconstruction of Tobacco Mosaic Virus from Images Recorded at 300 Kev on a 4Kx4K Ccd Camera." J.Struct.Biol., 171, 303. doi: 10.1016/J.JSB.2010.06.011. 4.6 angstrom cryo-EM reconstruction of tobacco mosaic virus from images recorded at 300 kev on a 4kx4k ccd camera. SNAP output
2xfm RNA-protein NMR Simon B, Kirkpatrick JP, Eckhardt S, Reuter M, Rocha EA, Andrade-Navarro MA, Sehr P, Pillai RS, Carlomagno T (2011) "Recognition of 2'-O-Methylated 3'-End of Pirna by the Paz Domain of a Piwi Protein." Structure, 19, 172. doi: 10.1016/J.STR.2010.11.015. Complex structure of the miwi paz domain bound to methylated single stranded RNA. SNAP output
2xgj hydrolase-RNA X-ray (2.9 Å) Weir JR, Bonneau F, Hentschel J, Conti E (2010) "Structural Analysis Reveals the Characteristic Features of Mtr4, a Dexh Helicase Involved in Nuclear RNA Processing and Surveillance." Proc.Natl.Acad.Sci.USA, 107, 12139. doi: 10.1073/PNAS.1004953107. Structure of mtr4, a dexh helicase involved in nuclear RNA processing and surveillance. SNAP output
2xkv protein transport cryo-EM (13.5 Å) Estrozi LF, Boehringer D, Shan S-O, Ban N, Schaffitzel C (2011) "Cryo-Em Structure of the E. Coli Translating Ribosome in Complex with Srp and its Receptor." Nat.Struct.Mol.Biol., 18, 88. doi: 10.1038/NSMB.1952. Atomic model of the srp-ftsy early conformation. SNAP output
2xli hydrolase-RNA X-ray (2.33 Å) Haurwitz RE, Jinek M, Wiedenheft B, Zhou K, Doudna JA (2010) "Sequence- and Structure-Specific RNA Processing by a Crispr Endonuclease." Science, 329, 1355. doi: 10.1126/SCIENCE.1192272. Crystal structure of the csy4-crrna complex, monoclinic form. SNAP output
2xlj hydrolase-RNA X-ray (2.6 Å) Haurwitz RE, Jinek M, Wiedenheft B, Zhou K, Doudna JA (2010) "Sequence- and Structure-Specific RNA Processing by a Crispr Endonuclease." Science, 329, 1355. doi: 10.1126/SCIENCE.1192272. Crystal structure of the csy4-crrna complex, hexagonal form. SNAP output
2xlk hydrolase-RNA X-ray (1.805 Å) Haurwitz RE, Jinek M, Wiedenheft B, Zhou K, Doudna JA (2010) "Sequence- and Structure-Specific RNA Processing by a Crispr Endonuclease." Science, 329, 1355. doi: 10.1126/SCIENCE.1192272. Crystal structure of the csy4-crrna complex, orthorhombic form. SNAP output
2xnr RNA binding protein-RNA X-ray (1.6 Å) Lunde BM, Horner M, Meinhart A (2011) "Structural Insights Into Cis Element Recognition of Non-Polyadenylated Rnas by the Nab3-Rrm." Nucleic Acids Res., 39, 337. doi: 10.1093/NAR/GKQ751. Structural insights into cis element recognition of non- polyadenylated rnas by the nab3-rrm. SNAP output
2xpj virus X-ray (3.4 Å) Sagurthi SR, Rajaram V, Savithri HS, Murthy MRN "Crystal Structure of Natural Bottom Component of Phmv." Crystal structure of physalis mottle virus with intact ordered RNA. SNAP output
2xs2 RNA binding protein-RNA X-ray (1.35 Å) Jenkins HT, Malkova B, Edwards TA (2011) "Kinked beta-strands mediate high-affinity recognition of mRNA targets by the germ-cell regulator DAZL." Proc. Natl. Acad. Sci. U.S.A., 108, 18266-18271. doi: 10.1073/pnas.1105211108. Crystal structure of the rrm domain of mouse deleted in azoospermia-like in complex with RNA, uuguucuu. SNAP output
2xs5 RNA binding protein-RNA X-ray (1.6 Å) Jenkins HT, Edwards TA (2011) "Kinked Beta-Strands Mediate High-Affinity Recognition of Mrna Targets by the Germ-Cell Regulator Dazl." Proc.Natl.Acad.Sci.USA, 108, 18266. doi: 10.1073/PNAS.1105211108. Crystal structure of the rrm domain of mouse deleted in azoospermia- like in complex with mvh RNA, uguuc. SNAP output
2xs7 RNA binding protein-RNA X-ray (1.45 Å) Jenkins HT, Edwards TA (2011) "Kinked Beta-Strands Mediate High-Affinity Recognition of Mrna Targets by the Germ-Cell Regulator Dazl." Proc.Natl.Acad.Sci.USA, 108, 18266. doi: 10.1073/PNAS.1105211108. Crystal structure of the rrm domain of mouse deleted in azoospermia- like in complex with sycp3 RNA, uuguuu. SNAP output
2xxa protein transport X-ray (3.94 Å) Ataide SF, Schmitz N, Shen K, Ke A, Shan S, Doudna JA, Ban N (2011) "The Crystal Structure of the Signal Recognition Particle in Complex with its Receptor." Science, 331, 881. doi: 10.1126/SCIENCE.1196473. The crystal structure of the signal recognition particle (srp) in complex with its receptor(sr). SNAP output
2xzl hydrolase-RNA X-ray (2.4 Å) Chakrabarti S, Jayachandran U, Bonneau F, Fiorini F, Basquin C, Domcke S, Le Hir H, Conti E (2011) "Molecular Mechanisms for the RNA-Dependent ATPase Activity of Upf1 and its Regulation by Upf2." Mol.Cell, 41, 693. doi: 10.1016/J.MOLCEL.2011.02.010. Upf1-RNA complex. SNAP output
2xzo hydrolase-RNA X-ray (2.395 Å) Chakrabarti S, Jayachandran U, Bonneau F, Fiorini F, Basquin C, Domcke S, Le Hir H, Conti E (2011) "Molecular Mechanisms for the RNA-Dependent ATPase Activity of Upf1 and its Regulation by Upf2." Mol.Cell, 41, 693. doi: 10.1016/J.MOLCEL.2011.02.010. Upf1 helicase - RNA complex. SNAP output
2y8w hydrolase-RNA X-ray (1.8 Å) Sashital DG, Jinek M, Doudna JA (2011) "An RNA-Induced Conformational Change Required for Crispr RNA Cleavage by the Endoribonuclease Cse3." Nat.Struct.Mol.Biol., 18, 680. doi: 10.1038/NSMB.2043. Structure of crispr endoribonuclease cse3 bound to 20 nt RNA. SNAP output
2y8y hydrolase-RNA X-ray (1.44 Å) Sashital DG, Jinek M, Doudna JA (2011) "An RNA-Induced Conformational Change Required for Crispr RNA Cleavage by the Endoribonuclease Cse3." Nat.Struct.Mol.Biol., 18, 680. doi: 10.1038/NSMB.2043. Structure b of crispr endoribonuclease cse3 bound to 19 nt RNA. SNAP output
2y9h hydrolase-RNA X-ray (2.5 Å) Sashital DG, Jinek M, Doudna JA (2011) "An RNA-Induced Conformational Change Required for Crispr RNA Cleavage by the Endoribonuclease Cse3." Nat.Struct.Mol.Biol., 18, 680. doi: 10.1038/NSMB.2043. Structure a of crispr endoribonuclease cse3 bound to 19 nt RNA. SNAP output
2yh1 transcription NMR Mackereth CD, Madl T, Bonnal S, Simon B, Zanier K, Gasch A, Rybin V, Valcarcel J, Sattler M (2011) "Multi-Domain Conformational Selection Underlies Pre-Mrna Splicing Regulation by U2Af." Nature, 475, 408. doi: 10.1038/NATURE10171. Model of human u2af65 tandem rrm1 and rrm2 domains with eight-site uridine binding. SNAP output
2yhm viral protein-RNA X-ray (3.6 Å) El Omari K, Dhaliwal B, Ren J, Abrescia NGA, Lockyer M, Powell KL, Hawkins AR, Stammers DK (2011) "Structures of Respiratory Syncytial Virus Nucleocapsid Protein from Two Crystal Forms: Details of Potential Packing Interactions in the Native Helical Form." Acta Crystallogr.,Sect.F, 67, 1179. doi: 10.1107/S1744309111029228. Structure of respiratory syncytial virus nucleocapsid protein, p212121 crystal form. SNAP output
2yjy RNA binding protein-RNA X-ray (2.598 Å) Dong S, Wang Y, Cassidy-Amstutz C, Lu G, Bigler R, Jezyk MR, Li C, Hall TM, Wang Z (2011) "Specific and Modular Binding Code for Cytosine Recognition in Pumilio/Fbf (Puf) RNA-Binding Domains." J.Biol.Chem., 286, 26732. doi: 10.1074/JBC.M111.244889. A specific and modular binding code for cytosine recognition in puf domains. SNAP output
2ykg hydrolase X-ray (2.5 Å) Luo D, Ding SC, Vela A, Kohlway A, Lindenbach BD, Pyle AM (2011) "Structural Insights Into RNA Recognition by Rig-I." Cell(Cambridge,Mass.), 147, 409. doi: 10.1016/J.CELL.2011.09.023. Structural insights into RNA recognition by rig-i. SNAP output
2ykr ribosome-hydrolase cryo-EM (9.8 Å) Guo Q, Yuan Y, Xu Y, Feng B, Liu L, Chen K, Sun M, Yang Z, Lei J, Gao N (2011) "Structural Basis for the Function of a Small Gtpase Rsga on the 30S Ribosomal Subunit Maturation Revealed by Cryoelectron Microscopy." Proc.Natl.Acad.Sci.USA, 108, 13100. doi: 10.1073/PNAS.1104645108. 30s ribosomal subunit with rsga bound in the presence of gmppnp. SNAP output
2zh1 transferase-RNA X-ray (2.8 Å) Toh Y, Numata T, Watanabe K, Takeshita D, Nureki O, Tomita K (2008) "Molecular basis for maintenance of fidelity during the CCA-adding reaction by a CCA-adding enzyme." Embo J., 27, 1944-1952. doi: 10.1038/emboj.2008.124. Complex structure of afcca with trnaminida. SNAP output
2zh2 transferase-RNA X-ray (2.66 Å) Toh Y, Numata T, Watanabe K, Takeshita D, Nureki O, Tomita K (2008) "Molecular basis for maintenance of fidelity during the CCA-adding reaction by a CCA-adding enzyme." Embo J., 27, 1944-1952. doi: 10.1038/emboj.2008.124. Complex structure of afcca with trnaminidac. SNAP output
2zh3 transferase-RNA X-ray (2.5 Å) Toh Y, Numata T, Watanabe K, Takeshita D, Nureki O, Tomita K (2008) "Molecular basis for maintenance of fidelity during the CCA-adding reaction by a CCA-adding enzyme." Embo J., 27, 1944-1952. doi: 10.1038/emboj.2008.124. Complex structure of afcca with trnaminidca. SNAP output
2zh4 transferase-RNA X-ray (2.65 Å) Toh Y, Numata T, Watanabe K, Takeshita D, Nureki O, Tomita K (2008) "Molecular basis for maintenance of fidelity during the CCA-adding reaction by a CCA-adding enzyme." Embo J., 27, 1944-1952. doi: 10.1038/emboj.2008.124. Complex structure of afcca with trnaminidcg. SNAP output
2zh5 transferase-RNA X-ray (2.6 Å) Toh Y, Numata T, Watanabe K, Takeshita D, Nureki O, Tomita K (2008) "Molecular basis for maintenance of fidelity during the CCA-adding reaction by a CCA-adding enzyme." Embo J., 27, 1944-1952. doi: 10.1038/emboj.2008.124. Complex structure of afcca with trnaminidcu. SNAP output
2zh6 transferase-RNA X-ray (2.5 Å) Toh Y, Numata T, Watanabe K, Takeshita D, Nureki O, Tomita K (2008) "Molecular basis for maintenance of fidelity during the CCA-adding reaction by a CCA-adding enzyme." Embo J., 27, 1944-1952. doi: 10.1038/emboj.2008.124. Complex structure of afcca with trnaminidcu and atp. SNAP output
2zh7 transferase-RNA X-ray (3.0 Å) Toh Y, Numata T, Watanabe K, Takeshita D, Nureki O, Tomita K (2008) "Molecular basis for maintenance of fidelity during the CCA-adding reaction by a CCA-adding enzyme." Embo J., 27, 1944-1952. doi: 10.1038/emboj.2008.124. Complex structure of afcca with trnaminidg. SNAP output
2zh8 transferase-RNA X-ray (2.65 Å) Toh Y, Numata T, Watanabe K, Takeshita D, Nureki O, Tomita K (2008) "Molecular basis for maintenance of fidelity during the CCA-adding reaction by a CCA-adding enzyme." Embo J., 27, 1944-1952. doi: 10.1038/emboj.2008.124. Complex structure of afcca with trnaminidgc. SNAP output
2zh9 transferase-RNA X-ray (2.9 Å) Toh Y, Numata T, Watanabe K, Takeshita D, Nureki O, Tomita K (2008) "Molecular basis for maintenance of fidelity during the CCA-adding reaction by a CCA-adding enzyme." Embo J., 27, 1944-1952. doi: 10.1038/emboj.2008.124. Complex structure of afcca with trnaminidu. SNAP output
2zha transferase-RNA X-ray (2.95 Å) Toh Y, Numata T, Watanabe K, Takeshita D, Nureki O, Tomita K (2008) "Molecular basis for maintenance of fidelity during the CCA-adding reaction by a CCA-adding enzyme." Embo J., 27, 1944-1952. doi: 10.1038/emboj.2008.124. Complex structure of afcca with trnaminidu and ctp. SNAP output
2zhb transferase-RNA X-ray (3.05 Å) Toh Y, Numata T, Watanabe K, Takeshita D, Nureki O, Tomita K (2008) "Molecular basis for maintenance of fidelity during the CCA-adding reaction by a CCA-adding enzyme." Embo J., 27, 1944-1952. doi: 10.1038/emboj.2008.124. Complex structure of afcca with trnaminiduc. SNAP output
2zi0 gene regulation-RNA X-ray (2.82 Å) Chen H-Y, Yang J, Lin C, Yuan YA (2008) "Structural basis for RNA-silencing suppression by Tomato aspermy virus protein 2b." Embo Rep., 9, 754-760. doi: 10.1038/embor.2008.118. Crystal structure of tav2b-sirna complex. SNAP output
2zjp ribosome-antibiotic X-ray (3.7 Å) Harms JM, Wilson DN, Schluenzen F, Connell SR, Stachelhaus T, Zaborowska Z, Spahn CM, Fucini P (2008) "Translational Regulation Via L11: Molecular Switches on the Ribosome Turned on and Off by Thiostrepton and Micrococcin." Mol.Cell, 30, 26. doi: 10.1016/J.MOLCEL.2008.01.009. Thiopeptide antibiotic nosiheptide bound to the large ribosomal subunit of deinococcus radiodurans. SNAP output
2zjq ribosome X-ray (3.3 Å) Harms JM, Wilson DN, Schluenzen F, Connell SR, Stachelhaus T, Zaborowska Z, Spahn CM, Fucini P (2008) "Translational regulation via L11: molecular switches on the ribosome turned on and off by thiostrepton and micrococcin." Mol.Cell, 30, 26-38. doi: 10.1016/j.molcel.2008.01.009. Interaction of l7 with l11 induced by microccocin binding to the deinococcus radiodurans 50s subunit. SNAP output
2zjr ribosome X-ray (2.91 Å) Harms JM, Wilson DN, Schluenzen F, Connell SR, Stachelhaus T, Zaborowska Z, Spahn CM, Fucini P (2008) "Translational regulation via L11: molecular switches on the ribosome turned on and off by thiostrepton and micrococcin." Mol.Cell, 30, 26-38. doi: 10.1016/j.molcel.2008.01.009. Refined native structure of the large ribosomal subunit (50s) from deinococcus radiodurans. SNAP output
2zko RNA binding protein-RNA X-ray (1.7 Å) Cheng A, Wong SM, Yuan YA (2009) "Structural basis for dsRNA recognition by NS1 protein of influenza A virus." Cell Res., 19, 187-195. doi: 10.1038/cr.2008.288. Structural basis for dsrna recognition by ns1 protein of human influenza virus a. SNAP output
2zm5 transferase-RNA X-ray (2.55 Å) Chimnaronk S, Forouhar F, Sakai J, Yao M, Tron CM, Atta M, Fontecave M, Hunt JF, Tanaka I (2009) "Snapshots of dynamics in synthesizing N(6)-isopentenyladenosine at the tRNA anticodon." Biochemistry, 48, 5057-5065. doi: 10.1021/bi900337d. Crystal structure of trna modification enzyme miaa in the complex with trna(phe). SNAP output
2zm6 ribosome X-ray (3.3 Å) Kaminishi T, Wang H, Kawazoe M, Ishii R, Hanawa-Suetsugu K, Nomura M, Takemoto C, Shirouzu M, Paola F, Yokoyama S "Crystal structure of the Thermus thermophilus 30S ribosomal subunit." Crystal structure of the thermus thermophilus 30s ribosomal subunit. SNAP output
2zni ligase-RNA X-ray (3.1 Å) Nozawa K, O'Donoghue P, Gundllapalli S, Araiso Y, Ishitani R, Umehara T, Soll D, Nureki O (2009) "Pyrrolysyl-tRNA synthetase-tRNA(Pyl) structure reveals the molecular basis of orthogonality." Nature, 457, 1163-1167. doi: 10.1038/nature07611. Crystal structure of pyrrolysyl-trna synthetase-trna(pyl) complex from desulfitobacterium hafniense. SNAP output
2zue ligase-RNA X-ray (2.0 Å) Konno M, Sumida T, Uchikawa E, Mori Y, Yanagisawa T, Sekine S, Yokoyama S (2009) "Modeling of tRNA-assisted mechanism of Arg activation based on a structure of Arg-tRNA synthetase, tRNA, and an ATP analog (ANP)." Febs J., 276, 4763-4779. doi: 10.1111/j.1742-4658.2009.07178.x. Crystal structure of pyrococcus horikoshii arginyl-trna synthetase complexed with trna(arg) and an atp analog (anp). SNAP output
2zuf ligase-RNA X-ray (2.3 Å) Konno M, Sumida T, Uchikawa E, Mori Y, Yanagisawa T, Sekine S, Yokoyama S (2009) "Modeling of tRNA-assisted mechanism of Arg activation based on a structure of Arg-tRNA synthetase, tRNA, and an ATP analog (ANP)." Febs J., 276, 4763-4779. doi: 10.1111/j.1742-4658.2009.07178.x. Crystal structure of pyrococcus horikoshii arginyl-trna synthetase complexed with trna(arg). SNAP output
2zxu transferase-RNA X-ray (2.75 Å) Chimnaronk S, Forouhar F, Sakai J, Yao M, Tron CM, Atta M, Fontecave M, Hunt JF, Tanaka I (2009) "Snapshots of dynamics in synthesizing N(6)-isopentenyladenosine at the tRNA anticodon." Biochemistry, 48, 5057-5065. doi: 10.1021/bi900337d. Crystal structure of trna modification enzyme miaa in the complex with trna(phe) and dmaspp. SNAP output
2zzm transferase-RNA X-ray (2.65 Å) Goto-Ito S, Ito T, Kuratani M, Bessho Y, Yokoyama S (2009) "Tertiary structure checkpoint at anticodon loop modification in tRNA functional maturation." Nat.Struct.Mol.Biol., 16, 1109-1115. doi: 10.1038/nsmb.1653. The complex structure of atrm5 and trnaleu. SNAP output
2zzn transferase-RNA X-ray (2.95 Å) Goto-Ito S, Ito T, Kuratani M, Bessho Y, Yokoyama S (2009) "Tertiary structure checkpoint at anticodon loop modification in tRNA functional maturation." Nat.Struct.Mol.Biol., 16, 1109-1115. doi: 10.1038/nsmb.1653. The complex structure of atrm5 and trnacys. SNAP output
3a2k ligase-RNA X-ray (3.65 Å) Nakanishi K, Bonnefond L, Kimura S, Suzuki T, Ishitani R, Nureki O (2009) "Structural basis for translational fidelity ensured by transfer RNA lysidine synthetase." Nature, 461, 1144-1148. doi: 10.1038/nature08474. Crystal structure of tils complexed with trna. SNAP output
3a6p protein transport-nuclear protein-RNA X-ray (2.92 Å) Okada C, Yamashita E, Lee SJ, Shibata S, Katahira J, Nakagawa A, Yoneda Y, Tsukihara T (2009) "A high-resolution structure of the pre-microRNA nuclear export machinery." Science, 326, 1275-1279. doi: 10.1126/science.1178705. Crystal structure of exportin-5:rangtp:pre-mirna complex. SNAP output
3adb transferase-RNA X-ray (2.8 Å) Chiba S, Itoh Y, Sekine S, Yokoyama S (2010) "Structural Basis for the Major Role of O-Phosphoseryl-tRNA Kinase in the UGA-Specific Encoding of Selenocysteine." Mol.Cell, 39, 410-420. doi: 10.1016/j.molcel.2010.07.018. Crystal structure of o-phosphoseryl-trna kinase complexed with selenocysteine trna and amppnp (crystal type 1). SNAP output
3adc transferase-RNA X-ray (2.9 Å) Chiba S, Itoh Y, Sekine S, Yokoyama S (2010) "Structural Basis for the Major Role of O-Phosphoseryl-tRNA Kinase in the UGA-Specific Encoding of Selenocysteine." Mol.Cell, 39, 410-420. doi: 10.1016/j.molcel.2010.07.018. Crystal structure of o-phosphoseryl-trna kinase complexed with selenocysteine trna and amppnp (crystal type 2). SNAP output
3add transferase-RNA X-ray (2.4 Å) Chiba S, Itoh Y, Sekine S, Yokoyama S (2010) "Structural Basis for the Major Role of O-Phosphoseryl-tRNA Kinase in the UGA-Specific Encoding of Selenocysteine." Mol.Cell, 39, 410-420. doi: 10.1016/j.molcel.2010.07.018. Crystal structure of o-phosphoseryl-trna kinase complexed with selenocysteine trna and amppnp (crystal type 3). SNAP output
3adi gene regulation-RNA X-ray (3.2 Å) Yang SW, Chen HY, Yang J, Machida S, Chua NH, Yuan YA (2010) "Structure of arabidopsis HYPONASTIC LEAVES1 and its molecular implications for miRNA processing." Structure, 18, 594-605. doi: 10.1016/j.str.2010.02.006. Structure of arabidopsis hyl1 and its molecular implications for mirna processing. SNAP output
3adl gene regulation-RNA X-ray (2.2 Å) Yang SW, Chen HY, Yang J, Machida S, Chua NH, Yuan YA (2010) "Structure of arabidopsis HYPONASTIC LEAVES1 and its molecular implications for miRNA processing." Structure, 18, 594-605. doi: 10.1016/j.str.2010.02.006. Structure of trbp2 and its molecule implications for mirna processing. SNAP output
3aev translation-RNA binding protein-RNA X-ray (2.8 Å) Jia MZ, Horita S, Nagata K, Tanokura M (2010) "An archaeal Dim2-like protein, aDim2p, forms a ternary complex with a/eIF2 alpha and the 3' end fragment of 16S rRNA." J.Mol.Biol., 398, 774-785. doi: 10.1016/j.jmb.2010.03.055. Crystal structure of a-eif2alpha-adim2p-rrna complex from pyrococcus horikoshii ot3. SNAP output
3af6 hydrolase-RNA X-ray (2.6 Å) Nishida Y, Ishikawa H, Baba S, Nakagawa N, Kuramitsu S, Masui R (2010) "Crystal structure of an archaeal cleavage and polyadenylation specificity factor subunit from Pyrococcus horikoshii." Proteins, 78, 2395-2398. doi: 10.1002/prot.22748. The crystal structure of an archaeal cpsf subunit, ph1404 from pyrococcus horikoshii complexed with RNA-analog. SNAP output
3agv immune system-RNA X-ray (2.15 Å) Nomura Y, Sugiyama S, Sakamoto T, Miyakawa S, Adachi H, Takano K, Murakami S, Inoue T, Mori Y, Nakamura Y, Matsumura H (2010) "Conformational plasticity of RNA for target recognition as revealed by the 2.15 A crystal structure of a human IgG-aptamer complex." Nucleic Acids Res., 38, 7822-7829. doi: 10.1093/nar/gkq615. Crystal structure of a human igg-aptamer complex. SNAP output
3ahu translation-RNA X-ray (2.2 Å) Someya T, Baba S, Fujimoto M, Kumasaka T, Kawai G, Nakamura K "Crystal structure of YmaH (Hfq) from Bacillus subtilis in complex with an RNA aptamer." Crystal structure of ymah (hfq) from bacillus subtilis in complex with an RNA aptamer.. SNAP output
3akz ligase-RNA X-ray (2.9 Å) Ito T, Yokoyama S (2010) "Two enzymes bound to one transfer RNA assume alternative conformations for consecutive reactions." Nature, 467, 612-616. doi: 10.1038/nature09411. Crystal structure of thermotoga maritima nondiscriminating glutamyl-trna synthetase in complex with trnagln and a glutamyl-amp analog. SNAP output
3al0 ligase-RNA X-ray (3.368 Å) Ito T, Yokoyama S (2010) "Two enzymes bound to one transfer RNA assume alternative conformations for consecutive reactions." Nature, 467, 612-616. doi: 10.1038/nature09411. Crystal structure of the glutamine transamidosome from thermotoga maritima in the glutamylation state.. SNAP output
3am1 transferase-RNA X-ray (2.4 Å) Sherrer RL, Araiso Y, Aldag C, Ishitani R, Ho JML, Soll D, Nureki O (2011) "C-terminal domain of archaeal O-phosphoseryl-tRNA kinase displays large-scale motion to bind the 7-bp D-stem of archaeal tRNA(Sec)." Nucleic Acids Res., 39, 1034-1041. doi: 10.1093/nar/gkq845. Crystal structure of o-phosphoseryl-trna kinase complexed with anticodon-stem-loop truncated trna(sec). SNAP output
3amt RNA binding protein-RNA X-ray (2.9 Å) Osawa T, Kimura S, Terasaka N, Inanaga H, Suzuki T, Numata T (2011) "Structural basis of tRNA agmatinylation essential for AUA codon decoding." Nat.Struct.Mol.Biol., 18, 1275-1280. doi: 10.1038/nsmb.2144. Crystal structure of the tias-trna(ile2)-atp complex. SNAP output
3amu RNA binding protein-RNA X-ray (3.1 Å) Osawa T, Kimura S, Terasaka N, Inanaga H, Suzuki T, Numata T (2011) "Structural basis of tRNA agmatinylation essential for AUA codon decoding." Nat.Struct.Mol.Biol., 18, 1275-1280. doi: 10.1038/nsmb.2144. Crystal structure of the tias-trna(ile2)-ampcpp-agmatine complex. SNAP output
3avt translation, transferase-RNA X-ray (2.607 Å) Takeshita D, Tomita K (2012) "Molecular basis for RNA polymerization by Q beta replicase." Nat.Struct.Mol.Biol., 19, 229-237. doi: 10.1038/nsmb.2204. Structure of viral RNA polymerase complex 1. SNAP output
3avu translation, transferase-RNA X-ray (2.907 Å) Takeshita D, Tomita K (2012) "Molecular basis for RNA polymerization by Q beta replicase." Nat.Struct.Mol.Biol., 19, 229-237. doi: 10.1038/nsmb.2204. Structure of viral RNA polymerase complex 2. SNAP output
3avv translation, transferase-RNA X-ray (3.119 Å) Takeshita D, Tomita K (2012) "Molecular basis for RNA polymerization by Q beta replicase." Nat.Struct.Mol.Biol., 19, 229-237. doi: 10.1038/nsmb.2204. Structure of viral RNA polymerase complex 3. SNAP output
3avw translation, transferase-RNA X-ray (2.602 Å) Takeshita D, Tomita K (2012) "Molecular basis for RNA polymerization by Q beta replicase." Nat.Struct.Mol.Biol., 19, 229-237. doi: 10.1038/nsmb.2204. Structure of viral RNA polymerase complex 4. SNAP output
3avx translation, transferase-RNA X-ray (2.406 Å) Takeshita D, Tomita K (2012) "Molecular basis for RNA polymerization by Q beta replicase." Nat.Struct.Mol.Biol., 19, 229-237. doi: 10.1038/nsmb.2204. Structure of viral RNA polymerase complex 5. SNAP output
3avy translation, transferase-RNA X-ray (2.616 Å) Takeshita D, Tomita K (2012) "Molecular basis for RNA polymerization by Q beta replicase." Nat.Struct.Mol.Biol., 19, 229-237. doi: 10.1038/nsmb.2204. Structure of viral RNA polymerase complex 6. SNAP output
3b0u oxidoreductase-RNA X-ray (1.948 Å) Yu F, Tanaka Y, Yamashita K, Suzuki T, Nakamura A, Hirano N, Suzuki T, Yao M, Tanaka I (2011) "Molecular basis of dihydrouridine formation on tRNA." Proc.Natl.Acad.Sci.USA, 108, 19593-19598. doi: 10.1073/pnas.1112352108. Trna-dihydrouridine synthase from thermus thermophilus in complex with trna fragment. SNAP output
3b0v oxidoreductase-RNA X-ray (3.51 Å) Yu F, Tanaka Y, Yamashita K, Suzuki T, Nakamura A, Hirano N, Suzuki T, Yao M, Tanaka I (2011) "Molecular basis of dihydrouridine formation on tRNA." Proc.Natl.Acad.Sci.USA, 108, 19593-19598. doi: 10.1073/pnas.1112352108. Trna-dihydrouridine synthase from thermus thermophilus in complex with trna. SNAP output
3bo0 ribosome cryo-EM (9.6 Å) Menetret JF, Schaletzky J, Clemons WM, Osborne AR, Skanland SS, Denison C, Gygi SP, Kirkpatrick DS, Park E, Ludtke SJ, Rapoport TA, Akey CW (2007) "Ribosome binding of a single copy of the SecY complex: implications for protein translocation." Mol.Cell, 28, 1083-1092. doi: 10.1016/j.molcel.2007.10.034. Ribosome-secy complex. SNAP output
3bo1 ribosome cryo-EM (9.6 Å) Menetret JF, Schaletzky J, Clemons WM, Osborne AR, Skanland SS, Denison C, Gygi SP, Kirkpatrick DS, Park E, Ludtke SJ, Rapoport TA, Akey CW (2007) "Ribosome binding of a single copy of the SecY complex: implications for protein translocation." Mol.Cell, 28, 1083-1092. doi: 10.1016/j.molcel.2007.10.034. Ribosome-secy complex. SNAP output
3bo2 nuclear protein-RNA X-ray (3.31 Å) Lipchock SV, Strobel SA (2008) "A relaxed active site after exon ligation by the group I intron." Proc.Natl.Acad.Sci.Usa, 105, 5699-5704. doi: 10.1073/pnas.0712016105. A relaxed active site following exon ligation by a group i intron. SNAP output
3bo3 nuclear protein-RNA X-ray (3.4 Å) Lipchock SV, Strobel SA (2008) "A relaxed active site after exon ligation by the group I intron." Proc.Natl.Acad.Sci.Usa, 105, 5699-5704. doi: 10.1073/pnas.0712016105. A relaxed active site following exon ligation by a group i intron. SNAP output
3bo4 nuclear protein-RNA X-ray (3.33 Å) Lipchock SV, Strobel SA (2008) "A relaxed active site after exon ligation by the group I intron." Proc.Natl.Acad.Sci.Usa, 105, 5699-5704. doi: 10.1073/pnas.0712016105. A relaxed active site following exon ligation by a group i intron. SNAP output
3boy transcription-RNA X-ray (1.7 Å) Kumarevel T, Balasundaresan D, Jeyakanthan J, Shinkai A, Yokoyama S, Kumar PKR "Crystal Structure of HutP complexed with the 55-mer RNA." Crystal structure of the hutp antitermination complex bound to the hut mrna. SNAP output
3bsb RNA binding protein-RNA X-ray (2.8 Å) Gupta YK, Nair DT, Wharton RP, Aggarwal AK (2008) "Structures of human Pumilio with noncognate RNAs reveal molecular mechanisms for binding promiscuity." Structure, 16, 549-557. doi: 10.1016/j.str.2008.01.006. Crystal structure of human pumilio1 in complex with cyclinb reverse RNA. SNAP output
3bsn transferase-RNA X-ray (1.8 Å) Zamyatkin DF, Parra F, Alonso JM, Harki DA, Peterson BR, Grochulski P, Ng KK (2008) "Structural insights into mechanisms of catalysis and inhibition in norwalk virus polymerase." J.Biol.Chem., 283, 7705-7712. doi: 10.1074/jbc.M709563200. Norwalk virus polymerase bound to 5-nitrocytidine triphosphate and primer-template RNA. SNAP output
3bso transferase-RNA X-ray (1.74 Å) Zamyatkin DF, Parra F, Alonso JM, Harki DA, Peterson BR, Grochulski P, Ng KK (2008) "Structural insights into mechanisms of catalysis and inhibition in norwalk virus polymerase." J.Biol.Chem., 283, 7705-7712. doi: 10.1074/jbc.M709563200. Norwalk virus polymerase bound to cytidine 5'-triphosphate and primer-template RNA. SNAP output
3bsx RNA binding protein-RNA X-ray (2.32 Å) Gupta YK, Nair DT, Wharton RP, Aggarwal AK (2008) "Structures of human Pumilio with noncognate RNAs reveal molecular mechanisms for binding promiscuity." Structure, 16, 549-557. doi: 10.1016/j.str.2008.01.006. Crystal structure of human pumilio 1 in complex with puf5 RNA. SNAP output
3bt7 transferase-RNA X-ray (2.43 Å) Alian A, Lee TT, Griner SL, Stroud RM, Finer-Moore J (2008) "Structure of a TrmA-RNA complex: A consensus RNA fold contributes to substrate selectivity and catalysis in m5U methyltransferases." Proc.Natl.Acad.Sci.Usa, 105, 6876-6881. doi: 10.1073/pnas.0802247105. Structure of e. coli 5-methyluridine methyltransferase trma in complex with 19 nucleotide t-arm analogue. SNAP output
3bx2 transcription, RNA binding protein-RNA X-ray (2.84 Å) Miller MT, Higgin JJ, Hall TMT (2008) "Basis of altered RNA-binding specificity by PUF proteins revealed by crystal structures of yeast Puf4p." Nat.Struct.Mol.Biol., 15, 397-402. doi: 10.1038/nsmb.1390. Puf4 RNA binding domain bound to ho endonuclease RNA 3' utr recognition sequence. SNAP output
3bx3 transcription, RNA binding protein-RNA X-ray (3.0 Å) Miller MT, Higgin JJ, Hall TMT (2008) "Basis of altered RNA-binding specificity by PUF proteins revealed by crystal structures of yeast Puf4p." Nat.Struct.Mol.Biol., 15, 397-402. doi: 10.1038/nsmb.1390. Puf4 t650c-c724r mutant bound to cox17 RNA 3' utr recognition sequence. SNAP output
3cc2 ribosome X-ray (2.4 Å) Blaha G, Gurel G, Schroeder SJ, Moore PB, Steitz TA (2008) "Mutations outside the anisomycin-binding site can make ribosomes drug-resistant." J.Mol.Biol., 379, 505-519. doi: 10.1016/j.jmb.2008.03.075. The refined crystal structure of the haloarcula marismortui large ribosomal subunit at 2.4 angstrom resolution with rrna sequence for the 23s rrna and genome-derived sequences for r-proteins. SNAP output
3cc4 ribosome X-ray (2.7 Å) Blaha G, Gurel G, Schroeder SJ, Moore PB, Steitz TA (2008) "Mutations outside the anisomycin-binding site can make ribosomes drug-resistant." J.Mol.Biol., 379, 505-519. doi: 10.1016/j.jmb.2008.03.075. Co-crystal structure of anisomycin bound to the 50s ribosomal subunit. SNAP output
3cc7 ribosome X-ray (2.7 Å) Blaha G, Gurel G, Schroeder SJ, Moore PB, Steitz TA (2008) "Mutations outside the anisomycin-binding site can make ribosomes drug-resistant." J.Mol.Biol., 379, 505-519. doi: 10.1016/j.jmb.2008.03.075. Structure of anisomycin resistant 50s ribosomal subunit: 23s rrna mutation c2487u. SNAP output
3cce ribosome X-ray (2.75 Å) Blaha G, Gurel G, Schroeder SJ, Moore PB, Steitz TA (2008) "Mutations outside the anisomycin-binding site can make ribosomes drug-resistant." J.Mol.Biol., 379, 505-519. doi: 10.1016/j.jmb.2008.03.075. Structure of anisomycin resistant 50s ribosomal subunit: 23s rrna mutation u2535a. SNAP output
3ccj ribosome X-ray (3.3 Å) Blaha G, Gurel G, Schroeder SJ, Moore PB, Steitz TA (2008) "Mutations outside the anisomycin-binding site can make ribosomes drug-resistant." J.Mol.Biol., 379, 505-519. doi: 10.1016/j.jmb.2008.03.075. Structure of anisomycin resistant 50s ribosomal subunit: 23s rrna mutation c2534u. SNAP output
3ccl ribosome X-ray (2.9 Å) Blaha G, Gurel G, Schroeder SJ, Moore PB, Steitz TA (2008) "Mutations outside the anisomycin-binding site can make ribosomes drug-resistant." J.Mol.Biol., 379, 505-519. doi: 10.1016/j.jmb.2008.03.075. Structure of anisomycin resistant 50s ribosomal subunit: 23s rrna mutation u2535c. density for anisomycin is visible but not included in model.. SNAP output
3ccm ribosome X-ray (2.55 Å) Blaha G, Gurel G, Schroeder SJ, Moore PB, Steitz TA (2008) "Mutations outside the anisomycin-binding site can make ribosomes drug-resistant." J.Mol.Biol., 379, 505-519. doi: 10.1016/j.jmb.2008.03.075. Structure of anisomycin resistant 50s ribosomal subunit: 23s rrna mutation g2611u. SNAP output
3ccq ribosome X-ray (2.9 Å) Blaha G, Gurel G, Schroeder SJ, Moore PB, Steitz TA (2008) "Mutations outside the anisomycin-binding site can make ribosomes drug-resistant." J.Mol.Biol., 379, 505-519. doi: 10.1016/j.jmb.2008.03.075. Structure of anisomycin resistant 50s ribosomal subunit: 23s rrna mutation a2488u. SNAP output
3ccr ribosome X-ray (3.0 Å) Blaha G, Gurel G, Schroeder SJ, Moore PB, Steitz TA (2008) "Mutations outside the anisomycin-binding site can make ribosomes drug-resistant." J.Mol.Biol., 379, 505-519. doi: 10.1016/j.jmb.2008.03.075. Structure of anisomycin resistant 50s ribosomal subunit: 23s rrna mutation a2488c. density for anisomycin is visible but not included in the model.. SNAP output
3ccs ribosome X-ray (2.95 Å) Blaha G, Gurel G, Schroeder SJ, Moore PB, Steitz TA (2008) "Mutations outside the anisomycin-binding site can make ribosomes drug-resistant." J.Mol.Biol., 379, 505-519. doi: 10.1016/j.jmb.2008.03.075. Structure of anisomycin resistant 50s ribosomal subunit: 23s rrna mutation g2482a. SNAP output
3ccu ribosome X-ray (2.8 Å) Blaha G, Gurel G, Schroeder SJ, Moore PB, Steitz TA (2008) "Mutations outside the anisomycin-binding site can make ribosomes drug-resistant." J.Mol.Biol., 379, 505-519. doi: 10.1016/j.jmb.2008.03.075. Structure of anisomycin resistant 50s ribosomal subunit: 23s rrna mutation g2482c. SNAP output
3ccv ribosome X-ray (2.9 Å) Blaha G, Gurel G, Schroeder SJ, Moore PB, Steitz TA (2008) "Mutations outside the anisomycin-binding site can make ribosomes drug-resistant." J.Mol.Biol., 379, 505-519. doi: 10.1016/j.jmb.2008.03.075. Structure of anisomycin resistant 50s ribosomal subunit: 23s rrna mutation g2616a. SNAP output
3cd6 ribosome X-ray (2.75 Å) Blaha G, Gurel G, Schroeder SJ, Moore PB, Steitz TA (2008) "Mutations outside the anisomycin-binding site can make ribosomes drug-resistant." J.Mol.Biol., 379, 505-519. doi: 10.1016/j.jmb.2008.03.075. Co-cystal of large ribosomal subunit mutant g2616a with cc-puromycin. SNAP output
3cf5 ribosome-antibiotic X-ray (3.3 Å) Harms JM, Wilson DN, Schluenzen F, Connell SR, Stachelhaus T, Zaborowska Z, Spahn CM, Fucini P (2008) "Translational Regulation Via L11: Molecular Switches on the Ribosome Turned on and Off by Thiostrepton and Micrococcin." Mol.Cell, 30, 26. doi: 10.1016/J.MOLCEL.2008.01.009. Thiopeptide antibiotic thiostrepton bound to the large ribosomal subunit of deinococcus radiodurans. SNAP output
3ciy immune system-RNA X-ray (3.41 Å) Liu L, Botos I, Wang Y, Leonard JN, Shiloach J, Segal DM, Davies DR (2008) "Structural basis of toll-like receptor 3 signaling with double-stranded RNA." Science, 320, 379-381. doi: 10.1126/science.1155406. Mouse toll-like receptor 3 ectodomain complexed with double-stranded RNA. SNAP output
3cma ribosome X-ray (2.8 Å) Simonovic M, Steitz TA (2008) "Peptidyl-CCA deacylation on the ribosome promoted by induced fit and the O3'-hydroxyl group of A76 of the unacylated A-site tRNA." Rna, 14, 2372-2378. doi: 10.1261/rna.1118908. The structure of cca and cca-phe-cap-bio bound to the large ribosomal subunit of haloarcula marismortui. SNAP output
3cme ribosome X-ray (2.95 Å) Simonovic M, Steitz TA (2008) "Peptidyl-CCA deacylation on the ribosome promoted by induced fit and the O3'-hydroxyl group of A76 of the unacylated A-site tRNA." Rna, 14, 2372-2378. doi: 10.1261/rna.1118908. The structure of ca and cca-phe-cap-bio bound to the large ribosomal subunit of haloarcula marismortui. SNAP output
3cpw ribosome X-ray (2.7 Å) Ippolito JA, Kanyo ZK, Wang D, Franceschi FJ, Moore PB, Steitz TA, Duffy EM (2008) "Crystal Structure of the Oxazolidinone Antibiotic Linezolid Bound to the 50S Ribosomal Subunit." J.Med.Chem., 51, 3353-3356. doi: 10.1021/jm800379d. The structure of the antibiotic linezolid bound to the large ribosomal subunit of haloarcula marismortui. SNAP output
3cul RNA-RNA binding X-ray (2.8 Å) Xiao H, Murakami H, Suga H, Ferre-D'Amare AR (2008) "Structural basis of specific tRNA aminoacylation by a small in vitro selected ribozyme." Nature, 454, 358-361. doi: 10.1038/nature07033. Aminoacyl-trna synthetase ribozyme. SNAP output
3cun RNA-RNA binding X-ray (3.0 Å) Xiao H, Murakami H, Suga H, Ferre-D'Amare AR (2008) "Structural basis of specific tRNA aminoacylation by a small in vitro selected ribozyme." Nature, 454, 358-361. doi: 10.1038/nature07033. Aminoacyl-trna synthetase ribozyme. SNAP output
3cxc ribosome X-ray (3.0 Å) Zhou J, Bhattacharjee A, Chen S, Chen Y, Duffy E, Farmer J, Goldberg J, Hanselmann R, Ippolito JA, Lou R, Orbin A, Oyelere A, Salvino J, Springer D, Tran J, Wang D, Wu Y, Johnson G (2008) "Design at the atomic level: design of biaryloxazolidinones as potent orally active antibiotics." Bioorg.Med.Chem.Lett., 18, 6175-6178. doi: 10.1016/j.bmcl.2008.10.011. The structure of an enhanced oxazolidinone inhibitor bound to the 50s ribosomal subunit of h. marismortui. SNAP output
3cz3 viral protein-RNA X-ray (3.23 Å) Ma JB, Li F, Ding SW, Patel DJ "Structural Basis for siRNA Recognition by 2b, a Viral Suppressor of Non-Cell Autonomous RNA Silencing." Crystal structure of tomato aspermy virus 2b in complex with sirna. SNAP output
3d2s metal binding protein-RNA X-ray (1.7 Å) Teplova M, Patel DJ (2008) "Structural insights into RNA recognition by the alternative-splicing regulator muscleblind-like MBNL1." Nat.Struct.Mol.Biol., 15, 1343-1351. doi: 10.1038/nsmb.1519. Crystal structure of mbnl1 tandem zinc finger 3 and 4 domain in complex with cgcugu RNA. SNAP output
3dd2 hydrolase-hydrolase inhibitor-RNA X-ray (1.9 Å) Long SB, Long MB, White RR, Sullenger BA (2008) "Crystal structure of an RNA aptamer bound to thrombin." Rna, 14, 2504-2512. doi: 10.1261/rna.1239308. Crystal structure of an RNA aptamer bound to human thrombin. SNAP output
3deg ribosome cryo-EM (10.9 Å) Connell SR, Topf M, Qin Y, Wilson DN, Mielke T, Fucini P, Nierhaus KH, Spahn CMT (2008) "A new tRNA intermediate revealed on the ribosome during EF4-mediated back-translocation." Nat.Struct.Mol.Biol., 15, 910-915. doi: 10.1038/nsmb.1469. Complex of elongating escherichia coli 70s ribosome and ef4(lepa)-gmppnp. SNAP output
3dh3 isomerase-RNA X-ray (3.0 Å) Alian A, DeGiovanni A, Griner SL, Finer-Moore JS, Stroud RM (2009) "Crystal structure of an RluF-RNA complex: a base-pair rearrangement is the key to selectivity of RluF for U2604 of the ribosome." J.Mol.Biol., 388, 785-800. doi: 10.1016/j.jmb.2009.03.029. Crystal structure of rluf in complex with a 22 nucleotide RNA substrate. SNAP output
3dkn protein transport-RNA cryo-EM (8.7 Å) Menetret JF, Hegde RS, Aguiar M, Gygi SP, Park E, Rapoport TA, Akey CW (2008) "Single copies of Sec61 and TRAP associate with a nontranslating mammalian ribosome." Structure, 16, 1126-1137. doi: 10.1016/j.str.2008.05.003. Sec61 in the canine ribosome-channel complex from the endoplasmic reticulum. SNAP output
3dll ribosome X-ray (3.5 Å) Wilson DN, Schluenzen F, Harms JM, Starosta AL, Connell SR, Fucini P (2008) "The oxazolidinone antibiotics perturb the ribosomal peptidyl-transferase center and effect tRNA positioning." Proc.Natl.Acad.Sci.Usa, 105, 13339-13344. doi: 10.1073/pnas.0804276105. The oxazolidinone antibiotics perturb the ribosomal peptidyl-transferase center and effect trna positioning. SNAP output
3egz RNA X-ray (2.2 Å) Xiao H, Edwards TE, Ferre-D'Amare AR (2008) "Structural basis for specific, high-affinity tetracycline binding by an in vitro evolved aptamer and artificial riboswitch." Chem.Biol., 15, 1125-1137. doi: 10.1016/j.chembiol.2008.09.004. Crystal structure of an in vitro evolved tetracycline aptamer and artificial riboswitch. SNAP output
3eph transferase-RNA X-ray (2.95 Å) Zhou C, Huang RH (2008) "Crystallographic snapshots of eukaryotic dimethylallyltransferase acting on tRNA: insight into tRNA recognition and reaction mechanism." Proc.Natl.Acad.Sci.Usa, 105, 16142-16147. doi: 10.1073/pnas.0805680105. Crystallographic snapshots of eukaryotic dimethylallyltransferase acting on trna: insight into trna recognition and reaction mechanism. SNAP output
3epj transferase-RNA X-ray (3.1 Å) Zhou C, Huang RH (2008) "Crystallographic snapshots of eukaryotic dimethylallyltransferase acting on tRNA: insight into tRNA recognition and reaction mechanism." Proc.Natl.Acad.Sci.Usa, 105, 16142-16147. doi: 10.1073/pnas.0805680105. Crystallographic snapshots of eukaryotic dimethylallyltransferase acting on trna: insight into trna recognition and reaction mechanism. SNAP output
3epk transferase-RNA X-ray (3.2 Å) Zhou C, Huang RH (2008) "Crystallographic snapshots of eukaryotic dimethylallyltransferase acting on tRNA: insight into tRNA recognition and reaction mechanism." Proc.Natl.Acad.Sci.Usa, 105, 16142-16147. doi: 10.1073/pnas.0805680105. Crystallographic snapshots of eukaryotic dimethylallyltransferase acting on trna: insight into trna recognition and reaction mechanism. SNAP output
3epl transferase-RNA X-ray (3.6 Å) Zhou C, Huang RH (2008) "Crystallographic snapshots of eukaryotic dimethylallyltransferase acting on tRNA: insight into tRNA recognition and reaction mechanism." Proc.Natl.Acad.Sci.Usa, 105, 16142-16147. doi: 10.1073/pnas.0805680105. Crystallographic snapshots of eukaryotic dimethylallyltransferase acting on trna: insight into trna recognition and reaction mechanism. SNAP output
3eqt RNA binding protein-RNA X-ray (2.0 Å) Li X, Ranjith-Kumar CT, Brooks MT, Dharmaiah S, Herr AB, Kao C, Li P (2009) "The RIG-I-like Receptor LGP2 Recognizes the Termini of Double-stranded RNA." J.Biol.Chem., 284, 13881-13891. doi: 10.1074/jbc.M900818200. Crystal structure of human lgp2 c-terminal domain in complex with dsrna. SNAP output
3er9 transcription, transferase-RNA X-ray (2.06 Å) Li C, Li H, Zhou S, Sun E, Yoshizawa J, Poulos TL, Gershon PD (2009) "Polymerase Translocation with Respect to Single-Stranded Nucleic Acid: Looping or Wrapping of Primer around a Poly(A) Polymerase." Structure, 17, 680-689. doi: 10.1016/j.str.2009.03.012. Crystal structure of the heterodimeric vaccinia virus mrna polyadenylate polymerase complex with uu and 3'-deoxy atp. SNAP output
3ex7 hydrolase-RNA binding protein-RNA X-ray (2.301 Å) Nielsen KH, Chamieh H, Andersen CB, Fredslund F, Hamborg K, Le Hir H, Andersen GR (2009) "Mechanism of ATP turnover inhibition in the EJC." Rna, 15, 67-75. doi: 10.1261/rna.1283109. The crystal structure of ejc in its transition state. SNAP output
3fht hydrolase-RNA X-ray (2.2 Å) von Moeller H, Basquin C, Conti E (2009) "The mRNA export protein DBP5 binds RNA and the cytoplasmic nucleoporin NUP214 in a mutually exclusive manner." Nat.Struct.Mol.Biol., 16, 247-254. doi: 10.1038/nsmb.1561. Crystal structure of human dbp5 in complex with amppnp and RNA. SNAP output
3foz transferase-RNA X-ray (2.5 Å) Seif E, Hallberg BM (2009) "RNA-Protein Mutually Induced Fit: STRUCTURE OF ESCHERICHIA COLI ISOPENTENYL-tRNA TRANSFERASE IN COMPLEX WITH tRNA(Phe)." J.Biol.Chem., 284, 6600-6604. doi: 10.1074/jbc.C800235200. Structure of e. coli isopentenyl-trna transferase in complex with e. coli trna(phe). SNAP output
3fte transferase-RNA X-ray (3.0 Å) Tu C, Tropea JE, Austin BP, Court DL, Waugh DS, Ji X (2009) "Structural Basis for Binding of RNA and Cofactor by a KsgA Methyltransferase." Structure, 17, 374-385. doi: 10.1016/j.str.2009.01.010. Crystal structure of a. aeolicus ksga in complex with RNA. SNAP output
3ftf transferase-RNA X-ray (2.8 Å) Tu C, Tropea JE, Austin BP, Court DL, Waugh DS, Ji X (2009) "Structural Basis for Binding of RNA and Cofactor by a KsgA Methyltransferase." Structure, 17, 374-385. doi: 10.1016/j.str.2009.01.010. Crystal structure of a. aeolicus ksga in complex with RNA and sah. SNAP output
3g0h hydrolase-RNA X-ray (2.7 Å) Collins R, Karlberg T, Lehtio L, Schutz P, van den Berg S, Dahlgren LG, Hammarstrom M, Weigelt J, Schuler H (2009) "The DEXD/H-box RNA Helicase DDX19 Is Regulated by an {alpha}-Helical Switch." J.Biol.Chem., 284, 10296-10300. doi: 10.1074/jbc.C900018200. Human dead-box RNA helicase ddx19, in complex with an atp-analogue and RNA. SNAP output
3g4s ribosome X-ray (3.2 Å) Gurel G, Blaha G, Moore PB, Steitz TA (2009) "U2504 determines the species specificity of the A-site cleft antibiotics: the structures of tiamulin, homoharringtonine, and bruceantin bound to the ribosome." J.Mol.Biol., 389, 146-156. doi: 10.1016/j.jmb.2009.04.005. Co-crystal structure of tiamulin bound to the large ribosomal subunit. SNAP output
3g6e ribosome X-ray (2.7 Å) Gurel G, Blaha G, Moore PB, Steitz TA (2009) "U2504 determines the species specificity of the A-site cleft antibiotics: the structures of tiamulin, homoharringtonine, and bruceantin bound to the ribosome." J.Mol.Biol., 389, 146-156. doi: 10.1016/j.jmb.2009.04.005. Co-crystal structure of homoharringtonine bound to the large ribosomal subunit. SNAP output
3g71 ribosome X-ray (2.85 Å) Gurel G, Blaha G, Moore PB, Steitz TA (2009) "U2504 determines the species specificity of the A-site cleft antibiotics: the structures of tiamulin, homoharringtonine, and bruceantin bound to the ribosome." J.Mol.Biol., 389, 146-156. doi: 10.1016/j.jmb.2009.04.005. Co-crystal structure of bruceantin bound to the large ribosomal subunit. SNAP output
3g8s RNA binding protein-RNA X-ray (3.1 Å) Cochrane JC, Lipchock SV, Smith KD, Strobel SA (2009) "Structural and chemical basis for glucosamine 6-phosphate binding and activation of the glmS ribozyme." Biochemistry, 48, 3239-3246. doi: 10.1021/bi802069p. Crystal structure of the pre-cleaved bacillus anthracis glms ribozyme. SNAP output
3g8t RNA binding protein-RNA X-ray (3.0 Å) Cochrane JC, Lipchock SV, Smith KD, Strobel SA (2009) "Structural and chemical basis for glucosamine 6-phosphate binding and activation of the glmS ribozyme." Biochemistry, 48, 3239-3246. doi: 10.1021/bi802069p. Crystal structure of the g33a mutant bacillus anthracis glms ribozyme bound to glcn6p. SNAP output
3g96 RNA binding protein-RNA X-ray (3.01 Å) Cochrane JC, Lipchock SV, Smith KD, Strobel SA (2009) "Structural and chemical basis for glucosamine 6-phosphate binding and activation of the glmS ribozyme." Biochemistry, 48, 3239-3246. doi: 10.1021/bi802069p. Crystal structure of the bacillus anthracis glms ribozyme bound to man6p. SNAP output
3g9c RNA binding protein-RNA X-ray (2.9 Å) Cochrane JC, Lipchock SV, Smith KD, Strobel SA (2009) "Structural and chemical basis for glucosamine 6-phosphate binding and activation of the glmS ribozyme." Biochemistry, 48, 3239-3246. doi: 10.1021/bi802069p. Crystal structure of the product bacillus anthracis glms ribozyme. SNAP output
3g9y transcription-RNA X-ray (1.4 Å) Loughlin FE, Mansfield RE, Vaz PM, McGrath AP, Setiyaputra S, Gamsjaeger R, Chen ES, Morris BJ, Guss JM, Mackay JP (2009) "The zinc fingers of the SR-like protein ZRANB2 are single-stranded RNA-binding domains that recognize 5' splice site-like sequences." Proc.Natl.Acad.Sci.USA, 106, 5581-5586. doi: 10.1073/pnas.0802466106. Crystal structure of the second zinc finger from zranb2-znf265 bound to 6 nt ssrna sequence agguaa. SNAP output
3gib RNA binding protein-RNA X-ray (2.4 Å) Link TM, Valentin-Hansen P, Brennan RG (2009) "Structure of Escherichia coli Hfq bound to polyriboadenylate RNA." Proc.Natl.Acad.Sci.USA, 106, 19292-19297. doi: 10.1073/pnas.0908744106. Crystal structure of the complex of the e. coli hfq with poly(a). SNAP output
3gpq viral protein-RNA X-ray (2.0 Å) Malet H, Coutard B, Jamal S, Dutartre H, Papageorgiou N, Neuvonen M, Ahola T, Forrester N, Gould EA, Lafitte D, Ferron F, Lescar J, Gorbalenya AE, de Lamballerie X, Canard B (2009) "The crystal structures of Chikungunya and Venezuelan equine encephalitis virus nsP3 macro domains define a conserved adenosine binding pocket." J.Virol., 83, 6534-6545. doi: 10.1128/JVI.00189-09. Crystal structure of macro domain of chikungunya virus in complex with RNA. SNAP output
3h5x transferase-RNA X-ray (1.77 Å) Zamyatkin DF, Parra F, Machin A, Grochulski P, Ng KK (2009) "Binding of 2'-amino-2'-deoxycytidine-5'-triphosphate to norovirus polymerase induces rearrangement of the active site." J.Mol.Biol., 390, 10-16. doi: 10.1016/j.jmb.2009.04.069. Crystal structure of 2'-amino-2'-deoxy-cytidine-5'-triphosphate bound to norovirus gii RNA polymerase. SNAP output
3h5y transferase-RNA X-ray (1.77 Å) Zamyatkin DF, Parra F, Machin A, Grochulski P, Ng KK (2009) "Binding of 2'-amino-2'-deoxycytidine-5'-triphosphate to norovirus polymerase induces rearrangement of the active site." J.Mol.Biol., 390, 10-16. doi: 10.1016/j.jmb.2009.04.069. Norovirus polymerase+primer-template+ctp complex at 6 mm mncl2. SNAP output
3hax isomerase-biosynthetic protein-RNA X-ray (2.11 Å) Duan J, Li L, Lu J, Wang W, Ye K (2009) "Structural mechanism of substrate RNA recruitment in H/ACA RNA-guided pseudouridine synthase." Mol.Cell, 34, 427-439. doi: 10.1016/j.molcel.2009.05.005. Crystal structure of a substrate-bound gar1-minus h-aca rnp from pyrococcus furiosus. SNAP output
3hay isomerase-biosynthetic protein-RNA X-ray (4.99 Å) Duan J, Li L, Lu J, Wang W, Ye K (2009) "Structural mechanism of substrate RNA recruitment in H/ACA RNA-guided pseudouridine synthase." Mol.Cell, 34, 427-439. doi: 10.1016/j.molcel.2009.05.005. Crystal structure of a substrate-bound full h-aca rnp from pyrococcus furiosus. SNAP output
3hhn ligase-RNA X-ray (2.987 Å) Shechner DM, Grant RA, Bagby SC, Koldobskaya Y, Piccirilli JA, Bartel DP (2009) "Crystal structure of the catalytic core of an RNA-polymerase ribozyme." Science, 326, 1271-1275. doi: 10.1126/science.1174676. Crystal structure of class i ligase ribozyme self-ligation product, in complex with u1a rbd. SNAP output
3hhz viral protein-RNA X-ray (3.5 Å) Green TJ, Luo M (2009) "Structure of the vesicular stomatitis virus nucleocapsid in complex with the nucleocapsid-binding domain of the small polymerase cofactor, P." Proc.Natl.Acad.Sci.USA, 106, 11713-11718. doi: 10.1073/pnas.0903228106. Complex of the vesicular stomatitis virus nucleocapsid and the nucleocapsid-binding domain of the phosphoprotein. SNAP output
3hjw isomerase-RNA X-ray (2.35 Å) Liang B, Zhou J, Kahen E, Terns RM, Terns MP, Li H (2009) "Structure of a functional ribonucleoprotein pseudouridine synthase bound to a substrate RNA." Nat.Struct.Mol.Biol., 16, 740-746. doi: 10.1038/nsmb.1624. Structure of a functional ribonucleoprotein pseudouridine synthase bound to a substrate RNA. SNAP output
3hjy isomerase-RNA X-ray (3.65 Å) Liang B, Zhou J, Kahen E, Terns RM, Terns MP, Li H (2009) "Structure of a functional ribonucleoprotein pseudouridine synthase bound to a substrate RNA." Nat.Struct.Mol.Biol., 16, 740-746. doi: 10.1038/nsmb.1624. Structure of a functional ribonucleoprotein pseudouridine synthase bound to a substrate RNA. SNAP output
3hl2 transferase X-ray (2.81 Å) Palioura S, Sherrer RL, Steitz TA, Soll D, Simonovic M (2009) "The human SepSecS-tRNASec complex reveals the mechanism of selenocysteine formation." Science, 325, 321-325. doi: 10.1126/science.1173755. The crystal structure of the human sepsecs-trnasec complex. SNAP output
3hsb RNA binding protein-RNA X-ray (2.2 Å) Someya T, Baba S, Fujimoto M, Kawai G, Kumasaka T, Nakamura K (2012) "Crystal structure of Hfq from Bacillus subtilis in complex with SELEX-derived RNA aptamer: insight into RNA-binding properties of bacterial Hfq." Nucleic Acids Res., 40, 1856-1867. doi: 10.1093/nar/gkr892. Crystal structure of ymah (hfq) from bacillus subtilis in complex with an RNA aptamer. SNAP output
3htx transferase-RNA X-ray (3.1 Å) Huang Y, Ji L, Huang Q, Vassylyev DG, Chen X, Ma JB (2009) "Structural insights into mechanisms of the small RNA methyltransferase HEN1." Nature, 461, 823-827. doi: 10.1038/nature08433. Crystal structure of small RNA methyltransferase hen1. SNAP output
3i55 ribosome-antibiotic X-ray (3.11 Å) Gurel G, Blaha G, Steitz TA, Moore PB (2009) "Structures of triacetyloleandomycin and mycalamide A bind to the large ribosomal subunit of Haloarcula marismortui." Antimicrob.Agents Chemother., 53, 5010-5014. doi: 10.1128/AAC.00817-09. Co-crystal structure of mycalamide a bound to the large ribosomal subunit. SNAP output
3i56 ribosome-antibiotic X-ray (2.9 Å) Gurel G, Blaha G, Steitz TA, Moore PB (2009) "Structures of triacetyloleandomycin and mycalamide A bind to the large ribosomal subunit of Haloarcula marismortui." Antimicrob.Agents Chemother., 53, 5010-5014. doi: 10.1128/AAC.00817-09. Co-crystal structure of triacetyloleandomcyin bound to the large ribosomal subunit. SNAP output
3i5x hydrolase-RNA X-ray (1.9 Å) Del Campo M, Lambowitz AM (2009) "Structure of the Yeast DEAD box protein Mss116p reveals two wedges that crimp RNA." Mol.Cell, 35, 598-609. doi: 10.1016/j.molcel.2009.07.032. Structure of mss116p bound to ssrna and amp-pnp. SNAP output
3i5y hydrolase-RNA X-ray (2.49 Å) Del Campo M, Lambowitz AM (2009) "Structure of the Yeast DEAD box protein Mss116p reveals two wedges that crimp RNA." Mol.Cell, 35, 598-609. doi: 10.1016/j.molcel.2009.07.032. Structure of mss116p bound to ssrna containing a single 5-bru and amp-pnp. SNAP output
3i61 hydrolase-RNA X-ray (2.1 Å) Del Campo M, Lambowitz AM (2009) "Structure of the Yeast DEAD box protein Mss116p reveals two wedges that crimp RNA." Mol.Cell, 35, 598-609. doi: 10.1016/j.molcel.2009.07.032. Structure of mss116p bound to ssrna and adp-beryllium fluoride. SNAP output
3i62 hydrolase-RNA X-ray (1.95 Å) Del Campo M, Lambowitz AM (2009) "Structure of the Yeast DEAD box protein Mss116p reveals two wedges that crimp RNA." Mol.Cell, 35, 598-609. doi: 10.1016/j.molcel.2009.07.032. Structure of mss116p bound to ssrna and adp-aluminum fluoride. SNAP output
3iab hydrolase-RNA X-ray (2.7 Å) Perederina A, Esakova O, Quan C, Khanova E, Krasilnikov AS (2010) "Eukaryotic ribonucleases P/MRP: the crystal structure of the P3 domain." Embo J., 29, 761-769. doi: 10.1038/emboj.2009.396. Crystal structure of rnase p -rnase mrp proteins pop6, pop7 in a complex with the p3 domain of rnase mrp RNA. SNAP output
3ice transcription regulator-RNA X-ray (2.8 Å) Thomsen ND, Berger JM (2009) "Running in reverse: the structural basis for translocation polarity in hexameric helicases." Cell(Cambridge,Mass.), 139, 523-534. doi: 10.1016/j.cell.2009.08.043. Rho transcription termination factor bound to RNA and adp-bef3. SNAP output
3icq RNA binding protein X-ray (3.2 Å) Cook AG, Fukuhara N, Jinek M, Conti E (2009) "Structures of the tRNA export factor in the nuclear and cytosolic states." Nature, 461, 60-65. doi: 10.1038/nature08394. Karyopherin nuclear state. SNAP output
3id5 transferase-ribosomal protein-RNA X-ray (4.01 Å) Ye K, Jia R, Lin J, Ju M, Peng J, Xu A, Zhang L (2009) "Structural organization of box C/D RNA-guided RNA methyltransferase." Proc.Natl.Acad.Sci.USA, 106, 13808-13813. doi: 10.1073/pnas.0905128106. Crystal structure of sulfolobus solfataricus c-d rnp assembled with nop5, fibrillarin, l7ae and a split half c-d RNA. SNAP output
3ie1 hydrolase-RNA X-ray (2.85 Å) Ishikawa H, Nakagawa N, Kuramitsu S, Masui R "Crystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNA." Crystal structure of h380a mutant ttha0252 from thermus thermophilus hb8 complexed with RNA. SNAP output
3iem hydrolase-RNA X-ray (2.5 Å) Ishikawa H, Nakagawa N, Kuramitsu S, Masui R "Crystal Structure of TTHA0252 from Thermus thermophilus HB8 complexed with RNA analog." Crystal structure of ttha0252 from thermus thermophilus hb8 complexed with RNA analog. SNAP output
3iev nucleotide binding protein-RNA X-ray (1.9 Å) Tu C, Zhou X, Tropea JE, Austin BP, Waugh DS, Court DL, Ji X (2009) "Structure of ERA in complex with the 3' end of 16S rRNA: implications for ribosome biogenesis." Proc.Natl.Acad.Sci.USA, 106, 14843-14848. doi: 10.1073/pnas.0904032106. Crystal structure of era in complex with mggnp and the 3' end of 16s rrna. SNAP output
3irw RNA binding protein-RNA X-ray (2.7 Å) Smith KD, Lipchock SV, Ames TD, Wang J, Breaker RR, Strobel SA (2009) "Structural basis of ligand binding by a c-di-GMP riboswitch." Nat.Struct.Mol.Biol., 16, 1218-1223. doi: 10.1038/nsmb.1702. Structure of a c-di-gmp riboswitch from v. cholerae. SNAP output
3ivk immune system - RNA X-ray (3.1 Å) Shechner DM, Grant RA, Bagby SC, Koldobskaya Y, Piccirilli JA, Bartel DP (2009) "Crystal structure of the catalytic core of an RNA-polymerase ribozyme." Science, 326, 1271-1275. doi: 10.1126/science.1174676. Crystal structure of the catalytic core of an RNA polymerase ribozyme complexed with an antigen binding antibody fragment. SNAP output
3iwn RNA-RNA binding protein X-ray (3.2 Å) Kulshina N, Baird NJ, Ferre-D'Amare AR (2009) "Recognition of the bacterial second messenger cyclic diguanylate by its cognate riboswitch." Nat.Struct.Mol.Biol., 16, 1212-1217. doi: 10.1038/nsmb.1701. Co-crystal structure of a bacterial c-di-gmp riboswitch. SNAP output
3iyq ribosomal protein-RNA cryo-EM (13.0 Å) Weis F, Bron P, Giudice E, Rolland JP, Thomas D, Felden B, Gillet R (2010) "tmRNA-SmpB: a journey to the centre of the bacterial ribosome." Embo J., 29, 3810-3818. doi: 10.1038/emboj.2010.252. Tmrna-smpb: a journey to the center of the bacterial ribosome. SNAP output
3iyr ribosomal protein-RNA cryo-EM (13.0 Å) Weis F, Bron P, Giudice E, Rolland JP, Thomas D, Felden B, Gillet R (2010) "tmRNA-SmpB: a journey to the centre of the bacterial ribosome." Embo J., 29, 3810-3818. doi: 10.1038/emboj.2010.252. Tmrna-smpb: a journey to the center of the bacterial ribosome. SNAP output
3iz4 RNA binding protein-RNA cryo-EM (13.6 Å) Fu J, Hashem Y, Wower I, Lei J, Liao HY, Zwieb C, Wower J, Frank J (2010) "Visualizing the transfer-messenger RNA as the ribosome resumes translation." Embo J., 29, 3819-3825. doi: 10.1038/emboj.2010.255. Modified e. coli tmrna in the resume state with the trna-like domain in the ribosomal p site interacting with the smpb. SNAP output
3izy RNA, ribosomal protein cryo-EM (10.8 Å) Yassin AS, Haque ME, Datta PP, Elmore K, Banavali NK, Spremulli LL, Agrawal RK (2011) "Insertion domain within mammalian mitochondrial translation initiation factor 2 serves the role of eubacterial initiation factor 1." Proc.Natl.Acad.Sci.USA, 108, 3918-3923. doi: 10.1073/pnas.1017425108. Mammalian mitochondrial translation initiation factor 2. SNAP output
3izz RNA, ribosomal protein cryo-EM (10.8 Å) Yassin AS, Haque ME, Datta PP, Elmore K, Banavali NK, Spremulli LL, Agrawal RK (2011) "Insertion domain within mammalian mitochondrial translation initiation factor 2 serves the role of eubacterial initiation factor 1." Proc.Natl.Acad.Sci.USA, 108, 3918-3923. doi: 10.1073/pnas.1017425108. Models for ribosome components that are nearest neighbors to the bovine mitochondrial initiation factor2 bound to the e. coli ribosome. SNAP output
3j06 virus cryo-EM (3.3 Å) Ge P, Zhou ZH (2011) "Hydrogen-bonding networks and RNA bases revealed by cryo electron microscopy suggest a triggering mechanism for calcium switches." Proc.Natl.Acad.Sci.USA, 108, 9637-9642. doi: 10.1073/pnas.1018104108. Cryoem helical reconstruction of tmv. SNAP output
3j0d translation cryo-EM (11.1 Å) Yokoyama T, Shaikh TR, Iwakura N, Kaji H, Kaji A, Agrawal RK (2012) "Structural insights into initial and intermediate steps of the ribosome-recycling process." Embo J., 31, 1836-1846. doi: 10.1038/emboj.2012.22. Models for the t. thermophilus ribosome recycling factor bound to the e. coli post-termination complex. SNAP output
3j0e translation cryo-EM (9.9 Å) Yokoyama T, Shaikh TR, Iwakura N, Kaji H, Kaji A, Agrawal RK (2012) "Structural insights into initial and intermediate steps of the ribosome-recycling process." Embo J., 31, 1836-1846. doi: 10.1038/emboj.2012.22. Models for the t. thermophilus ribosome recycling factor and the e. coli elongation factor g bound to the e. coli post-termination complex. SNAP output
3j0l ribosome cryo-EM (9.8 Å) Budkevich T, Giesebrecht J, Altman RB, Munro JB, Mielke T, Nierhaus KH, Blanchard SC, Spahn CM (2011) "Structure and dynamics of the Mammalian ribosomal pretranslocation complex." Mol.Cell, 44, 214-224. doi: 10.1016/j.molcel.2011.07.040. Core of mammalian 80s pre-ribosome in complex with trnas fitted to a 9.8a cryo-EM map: classic pre state 1. SNAP output
3j0o ribosome cryo-EM (9.0 Å) Budkevich T, Giesebrecht J, Altman RB, Munro JB, Mielke T, Nierhaus KH, Blanchard SC, Spahn CM (2011) "Structure and dynamics of the Mammalian ribosomal pretranslocation complex." Mol.Cell, 44, 214-224. doi: 10.1016/j.molcel.2011.07.040. Core of mammalian 80s pre-ribosome in complex with trnas fitted to a 9a cryo-EM map: classic pre state 2. SNAP output
3j0p ribosome cryo-EM (10.6 Å) Budkevich T, Giesebrecht J, Altman RB, Munro JB, Mielke T, Nierhaus KH, Blanchard SC, Spahn CM (2011) "Structure and dynamics of the Mammalian ribosomal pretranslocation complex." Mol.Cell, 44, 214-224. doi: 10.1016/j.molcel.2011.07.040. Core of mammalian 80s pre-ribosome in complex with trnas fitted to a 10.6a cryo-EM map: rotated pre state 1. SNAP output
3j0q ribosome cryo-EM (10.6 Å) Budkevich T, Giesebrecht J, Altman RB, Munro JB, Mielke T, Nierhaus KH, Blanchard SC, Spahn CM (2011) "Structure and dynamics of the Mammalian ribosomal pretranslocation complex." Mol.Cell, 44, 214-224. doi: 10.1016/j.molcel.2011.07.040. Core of mammalian 80s pre-ribosome in complex with trnas fitted to a 10.6a cryo-EM map: rotated pre state 2. SNAP output
3j16 ribosome cryo-EM (7.2 Å) Becker T, Franckenberg S, Wickles S, Shoemaker CJ, Anger AM, Armache J-P, Sieber H, Ungewickell C, Berninghausen O, Daberkow I, Karcher A, Thomm M, Hopfner KP, Green R, Beckmann R (2012) "Structural basis of highly conserved ribosome recycling in eukaryotes and archaea." Nature, 482, 501-506. doi: 10.1038/nature10829. Models of ribosome-bound dom34p and rli1p and their ribosomal binding partners. SNAP output
3j3v ribosome cryo-EM (13.3 Å) Li N, Chen Y, Guo Q, Zhang Y, Yuan Y, Ma C, Deng H, Lei J, Gao N (2013) "Cryo-EM structures of the late-stage assembly intermediates of the bacterial 50S ribosomal subunit." Nucleic Acids Res., 41, 7073-7083. doi: 10.1093/nar/gkt423. Atomic model of the immature 50s subunit from bacillus subtilis (state i-a). SNAP output
3j3w ribosome cryo-EM (10.7 Å) Li N, Chen Y, Guo Q, Zhang Y, Yuan Y, Ma C, Deng H, Lei J, Gao N (2013) "Cryo-EM structures of the late-stage assembly intermediates of the bacterial 50S ribosomal subunit." Nucleic Acids Res., 41, 7073-7083. doi: 10.1093/nar/gkt423. Atomic model of the immature 50s subunit from bacillus subtilis (state ii-a). SNAP output
3j45 ribosome-protein transport cryo-EM (9.5 Å) Park E, Menetret JF, Gumbart JC, Ludtke SJ, Li W, Whynot A, Rapoport TA, Akey CW (2013) "Structure of the SecY channel during initiation of protein translocation." Nature, 506, 102-106. doi: 10.1038/nature12720. Structure of a non-translocating secy protein channel with the 70s ribosome. SNAP output
3j46 ribosome-protein transport cryo-EM (10.1 Å) Park E, Menetret JF, Gumbart JC, Ludtke SJ, Li W, Whynot A, Rapoport TA, Akey CW (2013) "Structure of the SecY channel during initiation of protein translocation." Nature, 506, 102-106. doi: 10.1038/nature12720. Structure of the secy protein translocation channel in action. SNAP output
3j5l ribosome-antibiotic cryo-EM (6.6 Å) Arenz S, Ramu H, Gupta P, Berninghausen O, Beckmann R, Vazquez-Laslop N, Mankin AS, Wilson DN (2014) "Molecular basis for erythromycin-dependent ribosome stalling during translation of the ErmBL leader peptide." Nat Commun, 5, 3501. doi: 10.1038/ncomms4501. Structure of the e. coli 50s subunit with ermbl nascent chain. SNAP output
3j5s ribosome-translation cryo-EM (7.5 Å) Chen B, Boel G, Hashem Y, Ning W, Fei J, Wang C, Gonzalez RL, Hunt JF, Frank J (2014) "EttA regulates translation by binding the ribosomal E site and restricting ribosome-tRNA dynamics." Nat.Struct.Mol.Biol., 21, 152-159. doi: 10.1038/nsmb.2741. Etta binds to ribosome exit site and regulates translation by restricting ribosome and trna dynamics. SNAP output
3j5y translation-RNA cryo-EM (9.7 Å) des Georges A, Hashem Y, Unbehaun A, Grassucci RA, Taylor D, Hellen CU, Pestova TV, Frank J (2014) "Structure of the mammalian ribosomal pre-termination complex associated with eRF1*eRF3*GDPNP." Nucleic Acids Res., 42, 3409-3418. doi: 10.1093/nar/gkt1279. Structure of the mammalian ribosomal pre-termination complex associated with erf1-erf3-gdpnp. SNAP output
3j7a ribosome-inhibitor cryo-EM (3.2 Å) Wong W, Bai XC, Brown A, Fernandez IS, Hanssen E, Condron M, Tan YH, Baum J, Scheres SH (2014) "Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine." Elife, 3, e03080. doi: 10.7554/eLife.03080. cryo-EM structure of the plasmodium falciparum 80s ribosome bound to the anti-protozoan drug emetine, small subunit. SNAP output
3j7y ribosome cryo-EM (3.4 Å) Brown A, Amunts A, Bai XC, Sugimoto Y, Edwards PC, Murshudov G, Scheres SH, Ramakrishnan V (2014) "Structure of the large ribosomal subunit from human mitochondria." Science, 346, 718-722. doi: 10.1126/science.1258026. Structure of the large ribosomal subunit from human mitochondria. SNAP output
3j7z ribosome-antibiotic cryo-EM (3.9 Å) Arenz S, Meydan S, Starosta AL, Berninghausen O, Beckmann R, Vazquez-Laslop N, Wilson DN (2014) "Drug Sensing by the Ribosome Induces Translational Arrest via Active Site Perturbation." Mol.Cell, 56, 446-452. doi: 10.1016/j.molcel.2014.09.014. Structure of the e. coli 50s subunit with ermcl nascent chain. SNAP output
3j80 ribosome cryo-EM (3.75 Å) Hussain T, Llacer JL, Fernandez IS, Munoz A, Martin-Marcos P, Savva CG, Lorsch JR, Hinnebusch AG, Ramakrishnan V (2014) "Structural changes enable start codon recognition by the eukaryotic translation initiation complex." Cell(Cambridge,Mass.), 159, 597-607. doi: 10.1016/j.cell.2014.10.001. Cryoem structure of 40s-eif1-eif1a preinitiation complex. SNAP output
3j81 ribosome cryo-EM (4.0 Å) Hussain T, Llacer JL, Fernandez IS, Munoz A, Martin-Marcos P, Savva CG, Lorsch JR, Hinnebusch AG, Ramakrishnan V (2014) "Structural changes enable start codon recognition by the eukaryotic translation initiation complex." Cell(Cambridge,Mass.), 159, 597-607. doi: 10.1016/j.cell.2014.10.001. Cryoem structure of a partial yeast 48s preinitiation complex. SNAP output
3j8g ribosome cryo-EM (5.0 Å) Zhang X, Yan K, Zhang Y, Li N, Ma C, Li Z, Zhang Y, Feng B, Liu J, Sun Y, Xu Y, Lei J, Gao N (2014) "Structural insights into the function of a unique tandem GTPase EngA in bacterial ribosome assembly." Nucleic Acids Res. doi: 10.1093/nar/gku1135. Electron cryo-microscopy structure of enga bound with the 50s ribosomal subunit. SNAP output
3j9b RNA binding protein-transferase-RNA cryo-EM (4.3 Å) Chang S, Sun D, Liang H, Wang J, Li J, Guo L, Wang X, Guan C, Boruah BM, Yuan L, Feng F, Yang M, Wang L, Wang Y, Wojdyla J, Li L, Wang J, Wang M, Cheng G, Wang HW, Liu Y (2015) "Cryo-EM Structure of Influenza Virus RNA Polymerase Complex at 4.3 angstrom Resolution." Mol.Cell. doi: 10.1016/j.molcel.2014.12.031. Electron cryo-microscopy of an RNA polymerase. SNAP output
3jam translation cryo-EM (3.46 Å) Llacer JL, Hussain T, Marler L, Aitken CE, Thakur A, Lorsch JR, Hinnebusch AG, Ramakrishnan V (2015) "Conformational Differences between Open and Closed States of the Eukaryotic Translation Initiation Complex." Mol.Cell, 59, 399-412. doi: 10.1016/j.molcel.2015.06.033. Cryoem structure of 40s-eif1a-eif1 complex from yeast. SNAP output
3jap translation cryo-EM (4.9 Å) Llacer JL, Hussain T, Marler L, Aitken CE, Thakur A, Lorsch JR, Hinnebusch AG, Ramakrishnan V (2015) "Conformational Differences between Open and Closed States of the Eukaryotic Translation Initiation Complex." Mol.Cell, 59, 399-412. doi: 10.1016/j.molcel.2015.06.033. Structure of a partial yeast 48s preinitiation complex in closed conformation. SNAP output
3jaq translation cryo-EM (6.0 Å) Llacer JL, Hussain T, Marler L, Aitken CE, Thakur A, Lorsch JR, Hinnebusch AG, Ramakrishnan V (2015) "Conformational Differences between Open and Closed States of the Eukaryotic Translation Initiation Complex." Mol.Cell, 59, 399-412. doi: 10.1016/j.molcel.2015.06.033. Structure of a partial yeast 48s preinitiation complex in open conformation. SNAP output
3jb7 transferase-viral protein-RNA cryo-EM (4.001 Å) Zhang X, Ding K, Yu X, Chang W, Sun J, Hong Zhou Z (2015) "In situ structures of the segmented genome and RNA polymerase complex inside a dsRNA virus." Nature, 527, 531-534. doi: 10.1038/nature15767. In situ structures of the segmented genome and RNA polymerase complex inside a dsrna virus. SNAP output
3jb9 RNA binding protein-RNA cryo-EM (3.6 Å) Yan C, Hang J, Wan R, Huang M, Wong C, Shi Y (2015) "Structure of a yeast spliceosome at 3.6-angstrom resolution." Science, 349, 1182-1191. doi: 10.1126/science.aac7629. cryo-EM structure of the yeast spliceosome at 3.6 angstrom resolution. SNAP output
3jcm transcription cryo-EM (3.8 Å) Wan R, Yan C, Bai R, Wang L, Huang M, Wong CC, Shi Y (2016) "The 3.8 angstrom structure of the U4/U6.U5 tri-snRNP: Insights into spliceosome assembly and catalysis." Science, 351, 466-475. doi: 10.1126/science.aad6466. cryo-EM structure of the spliceosomal u4-u6.u5 tri-snrnp. SNAP output
3jd5 ribosome cryo-EM (7.0 Å) Kaushal PS, Sharma MR, Booth TM, Haque EM, Tung CS, Sanbonmatsu KY, Spremulli LL, Agrawal RK (2014) "Cryo-EM structure of the small subunit of the mammalian mitochondrial ribosome." Proc.Natl.Acad.Sci.USA, 111, 7284-7289. doi: 10.1073/pnas.1401657111. cryo-EM structure of the small subunit of the mammalian mitochondrial ribosome. SNAP output
3k0j RNA-RNA binding protein X-ray (3.1 Å) Kulshina N, Edwards TE, Ferre-D'Amare AR (2010) "Thermodynamic analysis of ligand binding and ligand binding-induced tertiary structure formation by the thiamine pyrophosphate riboswitch." Rna, 16, 186-196. doi: 10.1261/rna.1847310. Crystal structure of the e. coli thim riboswitch in complex with thiamine pyrophosphate and the u1a crystallization module. SNAP output
3k49 RNA binding protein - RNA X-ray (2.5 Å) Zhu D, Stumpf CR, Krahn JM, Wickens M, Hall TM (2009) "A 5' cytosine binding pocket in Puf3p specifies regulation of mitochondrial mRNAs." Proc.Natl.Acad.Sci.USA, 106, 20192-20197. doi: 10.1073/pnas.0812079106. Puf3 RNA binding domain bound to cox17 RNA 3' utr recognition sequence site b. SNAP output
3k4e RNA binding protein - RNA X-ray (3.2 Å) Zhu D, Stumpf CR, Krahn JM, Wickens M, Hall TM (2009) "A 5' cytosine binding pocket in Puf3p specifies regulation of mitochondrial mRNAs." Proc.Natl.Acad.Sci.USA, 106, 20192-20197. doi: 10.1073/pnas.0812079106. Puf3 RNA binding domain bound to cox17 RNA 3' utr recognition sequence site a. SNAP output
3k5q RNA-RNA binding protein X-ray (2.2 Å) Wang Y, Opperman L, Wickens M, Hall TM (2009) "Structural basis for specific recognition of multiple mRNA targets by a PUF regulatory protein." Proc.Natl.Acad.Sci.USA, 106, 20186-20191. doi: 10.1073/pnas.0812076106. Crystal structure of fbf-2-fbe complex. SNAP output
3k5y RNA-RNA binding protein X-ray (2.3 Å) Wang Y, Opperman L, Wickens M, Hall TM (2009) "Structural basis for specific recognition of multiple mRNA targets by a PUF regulatory protein." Proc.Natl.Acad.Sci.USA, 106, 20186-20191. doi: 10.1073/pnas.0812076106. Crystal structure of fbf-2-gld-1 fbea complex. SNAP output
3k5z RNA-RNA binding protein X-ray (2.4 Å) Wang Y, Opperman L, Wickens M, Hall TM (2009) "Structural basis for specific recognition of multiple mRNA targets by a PUF regulatory protein." Proc.Natl.Acad.Sci.USA, 106, 20186-20191. doi: 10.1073/pnas.0812076106. Crystal structure of fbf-2-gld-1 fbea g4a mutant complex. SNAP output
3k61 RNA-RNA binding protein X-ray (2.21 Å) Wang Y, Opperman L, Wickens M, Hall TM (2009) "Structural basis for specific recognition of multiple mRNA targets by a PUF regulatory protein." Proc.Natl.Acad.Sci.USA, 106, 20186-20191. doi: 10.1073/pnas.0812076106. Crystal structure of fbf-2-fog-1 fbea complex. SNAP output
3k62 RNA-RNA binding protein X-ray (1.9 Å) Wang Y, Opperman L, Wickens M, Hall TM (2009) "Structural basis for specific recognition of multiple mRNA targets by a PUF regulatory protein." Proc.Natl.Acad.Sci.USA, 106, 20186-20191. doi: 10.1073/pnas.0812076106. Crystal structure of fbf-2-gld-1 fbeb complex. SNAP output
3k64 RNA-RNA binding protein X-ray (2.0 Å) Wang Y, Opperman L, Wickens M, Hall TM (2009) "Structural basis for specific recognition of multiple mRNA targets by a PUF regulatory protein." Proc.Natl.Acad.Sci.USA, 106, 20186-20191. doi: 10.1073/pnas.0812076106. Crystal structure of fbf-2-fem-3 pme complex. SNAP output
3kfu ligase-RNA X-ray (3.0 Å) Blaise M, Bailly M, Frechin M, Behrens MA, Fischer F, Oliveira CL, Becker HD, Pedersen JS, Thirup S, Kern D (2010) "Crystal structure of a transfer-ribonucleoprotein particle that promotes asparagine formation." Embo J., 29, 3118-3129. doi: 10.1038/emboj.2010.192. Crystal structure of the transamidosome. SNAP output
3klv transferase-RNA X-ray (2.6 Å) Ferrer-Orta C, Sierra M, Agudo R, de la Higuera I, Arias A, Perez-Luque R, Escarmis C, Domingo E, Verdaguer N (2010) "Structure of foot-and-mouth disease virus mutant polymerases with reduced sensitivity to ribavirin." J.Virol., 84, 6188-6199. doi: 10.1128/JVI.02420-09. M296i g62s mutant of foot-and-mouth disease virus RNA-polymerase in complex with a template- primer RNA. SNAP output
3kmq transferase-RNA X-ray (2.11 Å) Ferrer-Orta C, Sierra M, Agudo R, de la Higuera I, Arias A, Perez-Luque R, Escarmis C, Domingo E, Verdaguer N (2010) "Structure of foot-and-mouth disease virus mutant polymerases with reduced sensitivity to ribavirin." J.Virol., 84, 6188-6199. doi: 10.1128/JVI.02420-09. G62s mutant of foot-and-mouth disease virus RNA-polymerase in complex with a template- primer RNA, tetragonal structure. SNAP output
3kms transferase-RNA X-ray (2.2 Å) Ferrer-Orta C, Sierra M, Agudo R, de la Higuera I, Arias A, Perez-Luque R, Escarmis C, Domingo E, Verdaguer N (2010) "Structure of foot-and-mouth disease virus mutant polymerases with reduced sensitivity to ribavirin." J.Virol., 84, 6188-6199. doi: 10.1128/JVI.02420-09. G62s mutant of foot-and-mouth disease virus RNA-polymerase in complex with a template- primer RNA trigonal structure. SNAP output
3kna transferase-RNA X-ray (2.8 Å) Ferrer-Orta C, Sierra M, Agudo R, de la Higuera I, Arias A, Perez-Luque R, Escarmis C, Domingo E, Verdaguer N (2010) "Structure of foot-and-mouth disease virus mutant polymerases with reduced sensitivity to ribavirin." J.Virol., 84, 6188-6199. doi: 10.1128/JVI.02420-09. M296i mutant of foot-and-mouth disease virus RNA-polymerase in complex with a template- primer RNA. SNAP output
3koa transferase-RNA X-ray (2.4 Å) Ferrer-Orta C, Sierra M, Agudo R, de la Higuera I, Arias A, Perez-Luque R, Escarmis C, Domingo E, Verdaguer N (2010) "Structure of foot-and-mouth disease virus mutant polymerases with reduced sensitivity to ribavirin." J.Virol., 84, 6188-6199. doi: 10.1128/JVI.02420-09. M296i mutant of foot-and-mouth disease virus RNA-polymerase in complex with a template- primer RNA and gtp. SNAP output
3ks8 viral protein-RNA X-ray (2.401 Å) Kimberlin CR, Bornholdt ZA, Li S, Woods VL, Macrae IJ, Saphire EO (2009) "Ebolavirus VP35 uses a bimodal strategy to bind dsRNA for innate immune suppression." Proc.Natl.Acad.Sci.USA, 107, 314-319. doi: 10.1073/pnas.0910547107. Crystal structure of reston ebolavirus vp35 RNA binding domain in complex with 18bp dsrna. SNAP output
3ktv RNA-RNA binding protein X-ray (3.8 Å) Wild K, Bange G, Bozkurt G, Segnitz B, Hendricks A, Sinning I (2010) "Structural insights into the assembly of the human and archaeal signal recognition particles." Acta Crystallogr.,Sect.D, 66, 295-303. doi: 10.1107/S0907444910000879. Crystal structure of the human srp19-s-domain srp RNA complex. SNAP output
3ktw RNA-RNA binding protein X-ray (3.2 Å) Wild K, Bange G, Bozkurt G, Segnitz B, Hendricks A, Sinning I (2010) "Structural insights into the assembly of the human and archaeal signal recognition particles." Acta Crystallogr.,Sect.D, 66, 295-303. doi: 10.1107/S0907444910000879. Crystal structure of the srp19-s-domain srp RNA complex of sulfolobus solfataricus. SNAP output
3l25 RNA binding protein-RNA X-ray (2.0 Å) Leung DW, Prins KC, Borek DM, Farahbakhsh M, Tufariello JM, Ramanan P, Nix JC, Helgeson LA, Otwinowski Z, Honzatko RB, Basler CF, Amarasinghe GK (2010) "Structural basis for dsRNA recognition and interferon antagonism by Ebola VP35." Nat.Struct.Mol.Biol., 17, 165-172. doi: 10.1038/nsmb.1765. Crystal structure of zaire ebola vp35 interferon inhibitory domain bound to 8 bp dsrna. SNAP output
3l26 RNA binding protein-RNA X-ray (2.4 Å) Leung DW, Prins KC, Borek DM, Farahbakhsh M, Tufariello JM, Ramanan P, Nix JC, Helgeson LA, Otwinowski Z, Honzatko RB, Basler CF, Amarasinghe GK (2010) "Structural basis for dsRNA recognition and interferon antagonism by Ebola VP35." Nat.Struct.Mol.Biol., 17, 165-172. doi: 10.1038/nsmb.1765. Crystal structure of zaire ebola vp35 interferon inhibitory domain bound to 8 bp dsrna. SNAP output
3l3c RNA binding protein-RNA X-ray (2.85 Å) Cochrane JC, Lipchock SV, Smith KD, Strobel SA (2009) "Structural and chemical basis for glucosamine 6-phosphate binding and activation of the glmS ribozyme." Biochemistry, 48, 3239-3246. doi: 10.1021/bi802069p. Crystal structure of the bacillus anthracis glms ribozyme bound to glc6p. SNAP output
3lob virus X-ray (3.6 Å) Banerjee M, Speir JA, Kwan MH, Huang R, Aryanpur PP, Bothner B, Johnson JE (2010) "Structure and function of a genetically engineered mimic of a nonenveloped virus entry intermediate." J.Virol., 84, 4737-4746. doi: 10.1128/JVI.02670-09. Crystal structure of flock house virus calcium mutant. SNAP output
3lqx RNA-RNA binding protein X-ray (1.93 Å) Batey RT, Doudna JA (2002) "Structural and Energetic Analysis of Metal Ions Essential to SRP Signal Recognition Domain Assembly." Biochemistry, 41, 11703-11710. Srp ribonucleoprotein core complexed with cobalt hexammine. SNAP output
3lrn hydrolase-RNA X-ray (2.6 Å) Lu C, Xu H, Ranjith-Kumar CT, Brooks MT, Hou TY, Hu F, Herr AB, Strong RK, Kao CC, Li P (2010) "The Structural Basis of 5' Triphosphate Double-Stranded RNA Recognition by RIG-I C-Terminal Domain." Structure, 18, 1032-1043. doi: 10.1016/j.str.2010.05.007. Crystal structure of human rig-i ctd bound to a 14 bp gc 5' ppp dsrna. SNAP output
3lrr hydrolase-RNA X-ray (2.15 Å) Lu C, Xu H, Ranjith-Kumar CT, Brooks MT, Hou TY, Hu F, Herr AB, Strong RK, Kao CC, Li P (2010) "The Structural Basis of 5' Triphosphate Double-Stranded RNA Recognition by RIG-I C-Terminal Domain." Structure, 18, 1032-1043. doi: 10.1016/j.str.2010.05.007. Crystal structure of human rig-i ctd bound to a 12 bp au rich 5' ppp dsrna. SNAP output
3lwo isomerase-RNA binding protein-RNA X-ray (2.855 Å) Zhou J, Lv C, Liang B, Chen M, Yang W, Li H (2010) "Glycosidic bond conformation preference plays a pivotal role in catalysis of RNA pseudouridylation: a combined simulation and structural study." J.Mol.Biol., 401, 690-695. doi: 10.1016/j.jmb.2010.06.061. Structure of h-aca rnp bound to a substrate RNA containing 5bru. SNAP output
3lwp isomerase-RNA binding protein-RNA X-ray (2.5 Å) Zhou J, Lv C, Liang B, Chen M, Yang W, Li H (2010) "Glycosidic bond conformation preference plays a pivotal role in catalysis of RNA pseudouridylation: a combined simulation and structural study." J.Mol.Biol., 401, 690-695. doi: 10.1016/j.jmb.2010.06.061. Structure of h-aca rnp bound to a substrate RNA containing 5brdu. SNAP output
3lwq isomerase-RNA binding protein-RNA X-ray (2.678 Å) Zhou J, Liang B, Li H (2010) "Functional and Structural Impact of Target Uridine Substitutions on the H/ACA Ribonucleoprotein Particle Pseudouridine Synthase ." Biochemistry, 49, 6276-6281. doi: 10.1021/bi1006699. Structure of h-aca rnp bound to a substrate RNA containing 3mu. SNAP output
3lwr isomerase-RNA binding protein-RNA X-ray (2.203 Å) Zhou J, Liang B, Li H (2010) "Functional and Structural Impact of Target Uridine Substitutions on the H/ACA Ribonucleoprotein Particle Pseudouridine Synthase ." Biochemistry, 49, 6276-6281. doi: 10.1021/bi1006699. Structure of h-aca rnp bound to a substrate RNA containing 4su. SNAP output
3lwv isomerase-RNA binding protein-RNA X-ray (2.499 Å) Zhou J, Liang B, Li H (2010) "Functional and Structural Impact of Target Uridine Substitutions on the H/ACA Ribonucleoprotein Particle Pseudouridine Synthase ." Biochemistry, 49, 6276-6281. doi: 10.1021/bi1006699. Structure of h-aca rnp bound to a substrate RNA containing 2'-deoxyuridine. SNAP output
3m7n hydrolase-RNA X-ray (2.4 Å) Hartung S, Niederberger T, Hartung M, Tresch A, Hopfner K-P (2010) "Quantitative analysis of processive RNA degradation by the archaeal RNA exosome." Nucleic Acids Res., 38, 5166-5176. doi: 10.1093/nar/gkq238. Archaeoglobus fulgidus exosome with RNA bound to the active site. SNAP output
3m85 hydrolase-RNA X-ray (3.0 Å) Hartung S, Niederberger T, Hartung M, Tresch A, Hopfner K-P (2010) "Quantitative analysis of processive RNA degradation by the archaeal RNA exosome." Nucleic Acids Res., 38, 5166-5176. doi: 10.1093/nar/gkq238. Archaeoglobus fulgidus exosome y70a with RNA bound to the active site. SNAP output
3mdg RNA binding-RNA X-ray (2.22 Å) Yang Q, Gilmartin GM, Doublie S (2010) "Structural basis of UGUA recognition by the Nudix protein CFI(m)25 and implications for a regulatory role in mRNA 3' processing." Proc.Natl.Acad.Sci.USA, 107, 10062-10067. doi: 10.1073/pnas.1000848107. Crystal structure of the 25kda subunit of human cleavage factor im in complex with RNA uuguau. SNAP output
3mdi RNA binding-RNA X-ray (2.07 Å) Yang Q, Gilmartin GM, Doublie S (2010) "Structural basis of UGUA recognition by the Nudix protein CFI(m)25 and implications for a regulatory role in mRNA 3' processing." Proc.Natl.Acad.Sci.USA, 107, 10062-10067. doi: 10.1073/pnas.1000848107. Crystal structure of the 25kda subunit of human cleavage factor im in complex with RNA uguaaa. SNAP output
3mj0 RNA-RNA binding protein X-ray (2.306 Å) Huang Y, Ding L, Ma J "Crystal Structure of drosophila Ago2 PAZ domain in complex with 3'-end 2'-O-methylated RNA." Crystal structure of drosophia ago-paz domain in complex with 3'-end 2'-o-methylated RNA. SNAP output
3moj RNA binding protein-RNA X-ray (2.902 Å) Hardin JW, Hu YX, McKay DB (2010) "Structure of the RNA binding domain of a DEAD-box helicase bound to its ribosomal RNA target reveals a novel mode of recognition by an RNA recognition motif." J.Mol.Biol., 402, 412-427. doi: 10.1016/j.jmb.2010.07.040. Structure of the RNA binding domain of the bacillus subtilis yxin protein complexed with a fragment of 23s ribosomal RNA. SNAP output
3mqk isomerase-RNA binding protein-RNA X-ray (2.8 Å) Zhou J, Liang B, Li H (2011) "Structural and functional evidence of high specificity of Cbf5 for ACA trinucleotide." Rna, 17, 244-250. doi: 10.1261/rna.2415811. Cbf5-nop10-gar1 complex binding with 17mer RNA containing aca trinucleotide. SNAP output
3mum RNA binding protein-RNA X-ray (2.9 Å) Smith KD, Lipchock SV, Livingston AL, Shanahan CA, Strobel SA (2010) "Structural and biochemical determinants of ligand binding by the c-di-GMP riboswitch ." Biochemistry, 49, 7351-7359. doi: 10.1021/bi100671e. Crystal structure of the g20a mutant c-di-gmp riboswith bound to c-di-gmp. SNAP output
3mur RNA binding protein-RNA X-ray (3.0 Å) Smith KD, Lipchock SV, Livingston AL, Shanahan CA, Strobel SA (2010) "Structural and biochemical determinants of ligand binding by the c-di-GMP riboswitch ." Biochemistry, 49, 7351-7359. doi: 10.1021/bi100671e. Crystal structure of the c92u mutant c-di-gmp riboswith bound to c-di-gmp. SNAP output
3mut RNA binding protein-RNA X-ray (3.0 Å) Smith KD, Lipchock SV, Livingston AL, Shanahan CA, Strobel SA (2010) "Structural and biochemical determinants of ligand binding by the c-di-GMP riboswitch ." Biochemistry, 49, 7351-7359. doi: 10.1021/bi100671e. Crystal structure of the g20a-c92u mutant c-di-gmp riboswith bound to c-di-gmp. SNAP output
3muv RNA binding protein-RNA X-ray (3.2 Å) Smith KD, Lipchock SV, Livingston AL, Shanahan CA, Strobel SA (2010) "Structural and biochemical determinants of ligand binding by the c-di-GMP riboswitch ." Biochemistry, 49, 7351-7359. doi: 10.1021/bi100671e. Crystal structure of the g20a-c92u mutant c-di-gmp riboswith bound to c-di-amp. SNAP output
3mxh RNA binding protein-RNA X-ray (2.3 Å) Smith KD, Lipchock SV, Livingston AL, Shanahan CA, Strobel SA (2010) "Structural and biochemical determinants of ligand binding by the c-di-GMP riboswitch ." Biochemistry, 49, 7351-7359. doi: 10.1021/bi100671e. Native structure of a c-di-gmp riboswitch from v. cholerae. SNAP output
3ncu RNA binding protein-RNA X-ray (2.55 Å) Wang Y, Ludwig J, Schuberth C, Goldeck M, Schlee M, Li H, Juranek S, Sheng G, Micura R, Tuschl T, Hartmann G, Patel DJ (2010) "Structural and functional insights into 5'-ppp RNA pattern recognition by the innate immune receptor RIG-I." Nat.Struct.Mol.Biol., 17, 781-787. doi: 10.1038/nsmb.1863. Structural and functional insights into pattern recognition by the innate immune receptor rig-i. SNAP output
3ndb signaling protein-RNA X-ray (3.0 Å) Hainzl T, Huang S, Merilainen G, Brannstrom K, Sauer-Eriksson AE (2011) "Structural basis of signal-sequence recognition by the signal recognition particle." Nat.Struct.Mol.Biol., 18, 389-391. doi: 10.1038/nsmb.1994. Crystal structure of a signal sequence bound to the signal recognition particle. SNAP output
3nl0 transferase-RNA X-ray (2.6 Å) Agudo R, Ferrer-Orta C, Arias A, de la Higuera I, Perales C, Perez-Luque R, Verdaguer N, Domingo E (2010) "A multi-step process of viral adaptation to a mutagenic nucleoside analogue by modulation of transition types leads to extinction-escape." Plos Pathog., 6, e1001072. doi: 10.1371/journal.ppat.1001072. Mutant p44s m296i of foot-and-mouth disease virus RNA-dependent RNA polymerase. SNAP output
3nma transferase-RNA X-ray (2.6 Å) Agudo R, Ferrer-Orta C, Arias A, de la Higuera I, Perales C, Perez-Luque R, Verdaguer N, Domingo E (2010) "A multi-step process of viral adaptation to a mutagenic nucleoside analogue by modulation of transition types leads to extinction-escape." Plos Pathog., 6, e1001072. doi: 10.1371/journal.ppat.1001072. Mutant p169s of foot-and-mouth disease virus RNA dependent RNA-polymerase. SNAP output
3nmr RNA binding protein-RNA X-ray (1.85 Å) Teplova M, Song J, Gaw HY, Teplov A, Patel DJ (2010) "Structural Insights into RNA Recognition by the Alternate-Splicing Regulator CUG-Binding Protein 1." Structure, 18, 1364-1377. doi: 10.1016/j.str.2010.06.018. Crystal structure of cugbp1 rrm1-2-RNA complex. SNAP output
3nmu transferase-RNA X-ray (2.729 Å) Xue S, Wang R, Yang F, Terns RM, Terns MP, Zhang X, Maxwell ES, Li H (2010) "Structural basis for substrate placement by an archaeal box C/D ribonucleoprotein particle." Mol.Cell, 39, 939-949. doi: 10.1016/j.molcel.2010.08.022. Crystal structure of substrate-bound halfmer box c-d rnp. SNAP output
3nna RNA binding protein-RNA X-ray (1.899 Å) Teplova M, Song J, Gaw HY, Teplov A, Patel DJ (2010) "Structural Insights into RNA Recognition by the Alternate-Splicing Regulator CUG-Binding Protein 1." Structure, 18, 1364-1377. doi: 10.1016/j.str.2010.06.018. Crystal structure of cugbp1 rrm1-2-RNA complex. SNAP output
3nnc RNA binding protein-RNA X-ray (2.2 Å) Teplova M, Song J, Gaw HY, Teplov A, Patel DJ (2010) "Structural Insights into RNA Recognition by the Alternate-Splicing Regulator CUG-Binding Protein 1." Structure, 18, 1364-1377. doi: 10.1016/j.str.2010.06.018. Crystal structure of cugbp1 rrm1-2-RNA complex. SNAP output
3nnh RNA binding protein-RNA X-ray (2.75 Å) Teplova M, Song J, Gaw HY, Teplov A, Patel DJ (2010) "Structural Insights into RNA Recognition by the Alternate-Splicing Regulator CUG-Binding Protein 1." Structure, 18, 1364-1377. doi: 10.1016/j.str.2010.06.018. Crystal structure of the cugbp1 rrm1 with guuguuuuguuu RNA. SNAP output
3nvi transferase-RNA X-ray (2.709 Å) Xue S, Wang R, Yang F, Terns RM, Terns MP, Zhang X, Maxwell ES, Li H (2010) "Structural basis for substrate placement by an archaeal box C/D ribonucleoprotein particle." Mol.Cell, 39, 939-949. doi: 10.1016/j.molcel.2010.08.022. Structure of n-terminal truncated nop56-58 bound with l7ae and box c-d RNA. SNAP output
3nvk transferase-RNA X-ray (3.209 Å) Xue S, Wang R, Yang F, Terns RM, Terns MP, Zhang X, Maxwell ES, Li H (2010) "Structural basis for substrate placement by an archaeal box C/D ribonucleoprotein particle." Mol.Cell, 39, 939-949. doi: 10.1016/j.molcel.2010.08.022. Structural basis for substrate placement by an archaeal box c-d ribonucleoprotein particle. SNAP output
3o3i RNA binding protein X-ray (2.801 Å) Tian Y, Simanshu DK, Ma JB, Patel DJ (2011) "Inaugural Article: Structural basis for piRNA 2'-O-methylated 3'-end recognition by Piwi PAZ (Piwi/Argonaute/Zwille) domains." Proc.Natl.Acad.Sci.USA, 108, 903-910. doi: 10.1073/pnas.1017762108. Crystal structure of human hiwi1 paz domain (residues 277-399) in complex with 14-mer RNA (12-bp + 2-nt overhang) containing 2'-oh at its 3'-end. SNAP output
3o6e RNA binding protein-RNA X-ray (2.904 Å) Tian Y, Simanshu DK, Ma JB, Patel DJ (2011) "Inaugural Article: Structural basis for piRNA 2'-O-methylated 3'-end recognition by Piwi PAZ (Piwi/Argonaute/Zwille) domains." Proc.Natl.Acad.Sci.USA, 108, 903-910. doi: 10.1073/pnas.1017762108. Crystal structure of human hiwi1 paz domain (residues 277-399) in complex with 14-mer RNA (12-bp + 2-nt overhang) containing 2'-och3 at its 3'-end. SNAP output
3o7v RNA binding protein-RNA X-ray (2.1 Å) Tian Y, Simanshu DK, Ma JB, Patel DJ (2011) "Inaugural Article: Structural basis for piRNA 2'-O-methylated 3'-end recognition by Piwi PAZ (Piwi/Argonaute/Zwille) domains." Proc.Natl.Acad.Sci.USA, 108, 903-910. doi: 10.1073/pnas.1017762108. Crystal structure of human hiwi1 (v361m) paz domain (residues 277-399) in complex with 14-mer RNA (12-bp + 2-nt overhang) containing 2'-och3 at its 3'-end. SNAP output
3o8c hydrolase-RNA X-ray (2.0 Å) Appleby TC, Anderson R, Fedorova O, Pyle AM, Wang R, Liu X, Brendza KM, Somoza JR (2011) "Visualizing ATP-Dependent RNA Translocation by the NS3 Helicase from HCV." J.Mol.Biol., 405, 1139-1153. doi: 10.1016/j.jmb.2010.11.034. Visualizing atp-dependent RNA translocation by the ns3 helicase from hcv. SNAP output
3o8r hydrolase-RNA X-ray (2.304 Å) Appleby TC, Anderson R, Fedorova O, Pyle AM, Wang R, Liu X, Brendza KM, Somoza JR (2011) "Visualizing ATP-Dependent RNA Translocation by the NS3 Helicase from HCV." J.Mol.Biol., 405, 1139-1153. doi: 10.1016/j.jmb.2010.11.034. Visualizing atp-dependent RNA translocation by the ns3 helicase from hcv. SNAP output
3og8 hydrolase-RNA X-ray (2.4 Å) Lu C, Ranjith-Kumar CT, Hao L, Kao CC, Li P (2011) "Crystal structure of RIG-I C-terminal domain bound to blunt-ended double-strand RNA without 5' triphosphate." Nucleic Acids Res., 39, 1565-1575. doi: 10.1093/nar/gkq974. Crystal structure of human rig-i ctd bound to a 14-bp blunt-ended dsrna. SNAP output
3oij ribosomal protein X-ray (3.0 Å) Thomas SR, Keller CA, Szyk A, Cannon JR, Laronde-Leblanc NA (2011) "Structural insight into the functional mechanism of Nep1/Emg1 N1-specific pseudouridine methyltransferase in ribosome biogenesis." Nucleic Acids Res., 39, 2445-2457. doi: 10.1093/nar/gkq1131. Crystal structure of saccharomyces cerevisiae nep1-emg1 bound to s-adenosylhomocysteine and 2 molecules of cognate RNA. SNAP output
3oin ribosomal protein X-ray (1.9 Å) Thomas SR, Keller CA, Szyk A, Cannon JR, Laronde-Leblanc NA (2011) "Structural insight into the functional mechanism of Nep1/Emg1 N1-specific pseudouridine methyltransferase in ribosome biogenesis." Nucleic Acids Res., 39, 2445-2457. doi: 10.1093/nar/gkq1131. Crystal structure of saccharomyces cerevisiae nep1-emg1 bound to s-adenosylhomocysteine and 1 molecule of cognate RNA. SNAP output
3ol6 transferase-RNA X-ray (2.5 Å) Gong P, Peersen OB (2010) "Structural basis for active site closure by the poliovirus RNA-dependent RNA polymerase." Proc.Natl.Acad.Sci.USA, 107, 22505-22510. doi: 10.1073/pnas.1007626107. Poliovirus polymerase elongation complex. SNAP output
3ol7 transferase-RNA X-ray (2.7 Å) Gong P, Peersen OB (2010) "Structural basis for active site closure by the poliovirus RNA-dependent RNA polymerase." Proc.Natl.Acad.Sci.USA, 107, 22505-22510. doi: 10.1073/pnas.1007626107. Poliovirus polymerase elongation complex with ctp. SNAP output
3ol8 transferase-RNA X-ray (2.75 Å) Gong P, Peersen OB (2010) "Structural basis for active site closure by the poliovirus RNA-dependent RNA polymerase." Proc.Natl.Acad.Sci.USA, 107, 22505-22510. doi: 10.1073/pnas.1007626107. Poliovirus polymerase elongation complex with ctp-mn. SNAP output
3ol9 transferase-RNA X-ray (2.25 Å) Gong P, Peersen OB (2010) "Structural basis for active site closure by the poliovirus RNA-dependent RNA polymerase." Proc.Natl.Acad.Sci.USA, 107, 22505-22510. doi: 10.1073/pnas.1007626107. Poliovirus polymerase elongation complex with 3'-deoxy-ctp. SNAP output
3ola transferase-RNA X-ray (2.55 Å) Gong P, Peersen OB (2010) "Structural basis for active site closure by the poliovirus RNA-dependent RNA polymerase." Proc.Natl.Acad.Sci.USA, 107, 22505-22510. doi: 10.1073/pnas.1007626107. Poliovirus polymerase elongation complex with 2'-deoxy-ctp. SNAP output
3olb transferase-RNA X-ray (2.41 Å) Gong P, Peersen OB (2010) "Structural basis for active site closure by the poliovirus RNA-dependent RNA polymerase." Proc.Natl.Acad.Sci.USA, 107, 22505-22510. doi: 10.1073/pnas.1007626107. Poliovirus polymerase elongation complex with 2',3'-dideoxy-ctp. SNAP output
3oto ribosome X-ray (3.69 Å) Demirci H, Murphy F, Belardinelli R, Kelley AC, Ramakrishnan V, Gregory ST, Dahlberg AE, Jogl G (2010) "Modification of 16S ribosomal RNA by the KsgA methyltransferase restructures the 30S subunit to optimize ribosome function." Rna, 16, 2319-2324. doi: 10.1261/rna.2357210. Crystal structure of the 30s ribosomal subunit from a ksga mutant of thermus thermophilus (hb8). SNAP output
3ouy transferase-RNA X-ray (2.69 Å) Pan B, Xiong Y, Steitz TA (2010) "How the CCA-Adding Enzyme Selects Adenine over Cytosine at Position 76 of tRNA." Science, 330, 937-940. doi: 10.1126/science.1194985. How the cca-adding enzyme selects adenine over cytosine at position 76 of trna. SNAP output
3ov7 transferase-RNA X-ray (3.0 Å) Pan B, Xiong Y, Steitz TA (2010) "How the CCA-Adding Enzyme Selects Adenine over Cytosine at Position 76 of tRNA." Science, 330, 937-940. doi: 10.1126/science.1194985. How the cca-adding enzyme selects adenine over cytosine in position 76 of trna. SNAP output
3ova transferase-RNA X-ray (1.98 Å) Pan B, Xiong Y, Steitz TA (2010) "How the CCA-Adding Enzyme Selects Adenine over Cytosine at Position 76 of tRNA." Science, 330, 937-940. doi: 10.1126/science.1194985. How the cca-adding enzyme selects adenine over cytosine in position 76 of trna. SNAP output
3ovb transferase-RNA X-ray (1.95 Å) Pan B, Xiong Y, Steitz TA (2010) "How the CCA-Adding Enzyme Selects Adenine over Cytosine at Position 76 of tRNA." Science, 330, 937-940. doi: 10.1126/science.1194985. How the cca-adding enzyme selects adenine over cytosine in position 76 of trna. SNAP output
3ovs transferase-RNA X-ray (2.8 Å) Pan B, Xiong Y, Steitz TA (2010) "How the CCA-Adding Enzyme Selects Adenine over Cytosine at Position 76 of tRNA." Science, 330, 937-940. doi: 10.1126/science.1194985. How the cca-adding enzyme selects adenine over cytosine in position 76 of trna. SNAP output
3ow2 ribosome X-ray (2.7 Å)     Crystal structure of enhanced macrolide bound to 50s ribosomal subunit. SNAP output
3p49 RNA binding protein-RNA X-ray (3.55 Å) Butler EB, Xiong Y, Wang J, Strobel SA (2011) "Structural basis of cooperative ligand binding by the glycine riboswitch." Chem.Biol., 18, 293-298. doi: 10.1016/j.chembiol.2011.01.013. Crystal structure of a glycine riboswitch from fusobacterium nucleatum. SNAP output
3pdm virus fiber diffraction Tewary SK, Oda T, Kendall A, Bian W, Stubbs G, Wong SM, Swaminathan K (2010) "Structure of Hibiscus latent Singapore virus by fiber diffraction: A non-conserved His122 contributes to coat protein stability." J.Mol.Biol. doi: 10.1016/j.jmb.2010.12.032. Hibiscus latent singapore virus. SNAP output
3pew hydrolase-RNA X-ray (1.501 Å) Montpetit B, Thomsen ND, Helmke KJ, Seeliger MA, Berger JM, Weis K (2011) "A conserved mechanism of DEAD-box ATPase activation by nucleoporins and InsP(6) in mRNA export." Nature, 472, 238-242. doi: 10.1038/nature09862. S. cerevisiae dbp5 l327v bound to RNA and adp bef3. SNAP output
3pey hydrolase-RNA X-ray (1.401 Å) Montpetit B, Thomsen ND, Helmke KJ, Seeliger MA, Berger JM, Weis K (2011) "A conserved mechanism of DEAD-box ATPase activation by nucleoporins and InsP(6) in mRNA export." Nature, 472, 238-242. doi: 10.1038/nature09862. S. cerevisiae dbp5 bound to RNA and adp bef3. SNAP output
3pf4 gene regulation-RNA X-ray (1.38 Å) Sachs R, Max KE, Heinemann U, Balbach J (2012) "RNA single strands bind to a conserved surface of the major cold shock protein in crystals and solution." Rna, 18, 65-76. doi: 10.1261/rna.02809212. Crystal structure of bs-cspb in complex with r(gucuuua). SNAP output
3pf5 gene regulation-RNA X-ray (1.68 Å) Sachs R, Max KE, Heinemann U, Balbach J (2012) "RNA single strands bind to a conserved surface of the major cold shock protein in crystals and solution." Rna, 18, 65-76. doi: 10.1261/rna.02809212. Crystal structure of bs-cspb in complex with ru6. SNAP output
3pio ribosome-antibiotic X-ray (3.25 Å) Belousoff MJ, Shapira T, Bashan A, Zimmerman E, Rozenberg H, Arakawa K, Kinashi H, Yonath A (2011) "Crystal structure of the synergistic antibiotic pair, lankamycin and lankacidin, in complex with the large ribosomal subunit." Proc.Natl.Acad.Sci.USA, 108, 2717-2722. doi: 10.1073/pnas.1019406108. Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit. SNAP output
3pip ribosome-antibiotic X-ray (3.45 Å) Belousoff MJ, Shapira T, Bashan A, Zimmerman E, Rozenberg H, Arakawa K, Kinashi H, Yonath A (2011) "Crystal structure of the synergistic antibiotic pair, lankamycin and lankacidin, in complex with the large ribosomal subunit." Proc.Natl.Acad.Sci.USA, 108, 2717-2722. doi: 10.1073/pnas.1019406108. Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit. SNAP output
3pkm hydrolase-RNA X-ray (3.103 Å) Wang R, Preamplume G, Terns MP, Terns RM, Li H (2011) "Interaction of the Cas6 Riboendonuclease with CRISPR RNAs: Recognition and Cleavage." Structure, 19, 257-264. doi: 10.1016/j.str.2010.11.014. Crystal structure of cas6 with its substrate RNA. SNAP output
3pla transferase-RNA X-ray (3.15 Å) Lin J, Lai S, Jia R, Xu A, Zhang L, Lu J, Ye K (2011) "Structural basis for site-specific ribose methylation by box C/D RNA protein complexes." Nature, 469, 559-563. doi: 10.1038/nature09688. Crystal structure of a catalytically active substrate-bound box c-d rnp from sulfolobus solfataricus. SNAP output
3ptx viral protein-RNA X-ray (3.0 Å) Green TJ, Rowse M, Tsao J, Kang J, Ge P, Zhou ZH, Luo M (2011) "Access to RNA Encapsidated in the Nucleocapsid of Vesicular Stomatitis Virus." J.Virol., 85, 2714-2722. doi: 10.1128/JVI.01927-10. Crystal structure of a vesicular stomatitis virus nucleocapsid-polya complex. SNAP output
3pu0 viral protein-RNA X-ray (3.09 Å) Green TJ, Rowse M, Tsao J, Kang J, Ge P, Zhou ZH, Luo M (2011) "Access to RNA Encapsidated in the Nucleocapsid of Vesicular Stomatitis Virus." J.Virol., 85, 2714-2722. doi: 10.1128/JVI.01927-10. Crystal structure of a vesicular stomatitis virus nucleocapsid-polyc complex. SNAP output
3pu1 viral protein-RNA X-ray (3.14 Å) Green TJ, Rowse M, Tsao J, Kang J, Ge P, Zhou ZH, Luo M (2011) "Access to RNA Encapsidated in the Nucleocapsid of Vesicular Stomatitis Virus." J.Virol., 85, 2714-2722. doi: 10.1128/JVI.01927-10. Crystal structure of a vesicular stomatitis virus nucleocapsid-polyg complex. SNAP output
3pu4 viral protein-RNA X-ray (3.0 Å) Green TJ, Rowse M, Tsao J, Kang J, Ge P, Zhou ZH, Luo M (2011) "Access to RNA Encapsidated in the Nucleocapsid of Vesicular Stomatitis Virus." J.Virol., 85, 2714-2722. doi: 10.1128/JVI.01927-10. Crystal structure of a vesicular stomatitis virus nucleocapsid-polyu complex. SNAP output
3q0l RNA binding protein-RNA X-ray (2.503 Å) Lu G, Hall TM (2011) "Alternate modes of cognate RNA recognition by human PUMILIO proteins." Structure, 19, 361-367. doi: 10.1016/j.str.2010.12.019. Crystal structure of the pumilio-homology domain from human pumilio1 in complex with p38alpha nrea. SNAP output
3q0m RNA binding protein-RNA X-ray (2.705 Å) Lu G, Hall TM (2011) "Alternate modes of cognate RNA recognition by human PUMILIO proteins." Structure, 19, 361-367. doi: 10.1016/j.str.2010.12.019. Crystal structure of the pumilio-homology domain from human pumilio1 in complex with p38alpha nreb. SNAP output
3q0n RNA binding protein-RNA X-ray (2.4 Å) Lu G, Hall TM (2011) "Alternate modes of cognate RNA recognition by human PUMILIO proteins." Structure, 19, 361-367. doi: 10.1016/j.str.2010.12.019. Crystal structure of the pumilio-homology domain from human pumilio1 in complex with erk2 nre. SNAP output
3q0o RNA binding protein-RNA X-ray (2.804 Å) Lu G, Hall TM (2011) "Alternate modes of cognate RNA recognition by human PUMILIO proteins." Structure, 19, 361-367. doi: 10.1016/j.str.2010.12.019. Crystal structure of the pumilio-homology domain from human pumilio1 in complex with erk2 nre. SNAP output
3q0p RNA binding protein-RNA X-ray (2.6 Å) Lu G, Hall TM (2011) "Alternate modes of cognate RNA recognition by human PUMILIO proteins." Structure, 19, 361-367. doi: 10.1016/j.str.2010.12.019. Crystal structure of the pumilio-homology domain from human pumilio1 in complex with hunchback nre. SNAP output
3q0q RNA binding protein-RNA X-ray (2.0 Å) Lu G, Hall TM (2011) "Alternate modes of cognate RNA recognition by human PUMILIO proteins." Structure, 19, 361-367. doi: 10.1016/j.str.2010.12.019. Crystal structure of the pumilio-homology domain from human pumilio2 in complex with p38alpha nrea. SNAP output
3q0r RNA binding protein-RNA X-ray (2.0 Å) Lu G, Hall TM (2011) "Alternate modes of cognate RNA recognition by human PUMILIO proteins." Structure, 19, 361-367. doi: 10.1016/j.str.2010.12.019. Crystal structure of the pumilio-homology domain from human pumilio2 in complex with p38alpha nreb. SNAP output
3q0s RNA binding protein-RNA X-ray (2.0 Å) Lu G, Hall TM (2011) "Alternate modes of cognate RNA recognition by human PUMILIO proteins." Structure, 19, 361-367. doi: 10.1016/j.str.2010.12.019. Crystal structure of the pumilio-homology domain from human pumilio2 in complex with erk2 nre. SNAP output
3q2t RNA binding protein-RNA X-ray (3.061 Å) Yang Q, Coseno M, Gilmartin GM, Doublie S (2011) "Crystal Structure of a Human Cleavage Factor CFI(m)25/CFI(m)68/RNA Complex Provides an Insight into Poly(A) Site Recognition and RNA Looping." Structure, 19, 368-377. doi: 10.1016/j.str.2010.12.021. Crystal structure of cfim68 rrm-cfim25-RNA complex. SNAP output
3qg9 RNA binding protein-RNA X-ray (2.25 Å) Koh YY, Wang Y, Qiu C, Opperman L, Gross L, Tanaka Hall TM, Wickens M (2011) "Stacking interactions in PUF-RNA complexes." Rna, 17, 718-727. doi: 10.1261/rna.2540311. Crystal structure of fbf-2-gld-1 fbea a7u mutant complex. SNAP output
3qgb RNA binding protein-RNA X-ray (2.4 Å) Koh YY, Wang Y, Qiu C, Opperman L, Gross L, Tanaka Hall TM, Wickens M (2011) "Stacking interactions in PUF-RNA complexes." Rna, 17, 718-727. doi: 10.1261/rna.2540311. Crystal structure of fbf-2 r288y mutant in complex with gld-1 fbea. SNAP output
3qgc RNA binding protein-RNA X-ray (1.9 Å) Koh YY, Wang Y, Qiu C, Opperman L, Gross L, Tanaka Hall TM, Wickens M (2011) "Stacking interactions in PUF-RNA complexes." Rna, 17, 718-727. doi: 10.1261/rna.2540311. Crystal structure of fbf-2 r288y mutant in complex with gld-1 fbea a7u mutant. SNAP output
3qjj immune system-RNA X-ray (2.8 Å) Wang R, Zheng H, Preamplume G, Li H "Cooperative and Specific Binding of a RAMP Protein to Single-stranded CRISPR Repeat RNA." One ramp protein binding different RNA substrates. SNAP output
3qjl immune system-RNA X-ray (2.7 Å) Wang R, Zheng H, Preamplume G, Li H "Cooperative and Specific Binding of a RAMP Protein to Single-stranded CRISPR Repeat RNA." One ramp protein binding different RNA substrates. SNAP output
3qjp immune system-RNA X-ray (3.3 Å) Wang R, Zheng H, Preamplume G, Li H "Cooperative and Specific Binding of a RAMP Protein to Single-stranded CRISPR Repeat RNA." An ramp protein binding different RNA substrates. SNAP output
3qrp RNA binding protein-RNA X-ray (2.352 Å) Gesner EM, Schellenberg MJ, Garside EL, George MM, Macmillan AM (2011) "Recognition and maturation of effector RNAs in a CRISPR interference pathway." Nat.Struct.Mol.Biol., 18, 688-692. doi: 10.1038/nsmb.2042. Structure of thermus thermophilus cse3 bound to an RNA representing a product mimic complex. SNAP output
3qrq RNA binding protein-RNA X-ray (3.194 Å) Gesner EM, Schellenberg MJ, Garside EL, George MM, Macmillan AM (2011) "Recognition and maturation of effector RNAs in a CRISPR interference pathway." Nat.Struct.Mol.Biol., 18, 688-692. doi: 10.1038/nsmb.2042. Structure of thermus thermophilus cse3 bound to an RNA representing a pre-cleavage complex. SNAP output
3qrr RNA binding protein-RNA X-ray (3.099 Å) Gesner EM, Schellenberg MJ, Garside EL, George MM, Macmillan AM (2011) "Recognition and maturation of effector RNAs in a CRISPR interference pathway." Nat.Struct.Mol.Biol., 18, 688-692. doi: 10.1038/nsmb.2042. Structure of thermus thermophilus cse3 bound to an RNA representing a product complex. SNAP output
3qsu chaperone-RNA X-ray (2.2 Å) Horstmann N, Orans J, Valentin-Hansen P, Shelburne SA, Brennan RG (2012) "Structural mechanism of Staphylococcus aureus Hfq binding to an RNA A-tract." Nucleic Acids Res., 40, 11023-11035. doi: 10.1093/nar/gks809. Structure of staphylococcus aureus hfq in complex with a7 RNA. SNAP output
3qsy translation-RNA X-ray (3.2 Å) Stolboushkina E, Nikonov S, Zelinskaya N, Arkhipova V, Nikulin A, Garber M, Nikonov O (2013) "Crystal structure of the archaeal translation initiation factor 2 in complex with a GTP analogue and Met-tRNAf(Met.)." J.Mol.Biol., 425, 989-998. doi: 10.1016/j.jmb.2012.12.023. Recognition of the methionylated initiator trna by the translation initiation factor 2 in archaea. SNAP output
3r1h RNA binding protein-RNA X-ray (3.15 Å) Shechner DM, Bartel DP (2011) "The structural basis of RNA-catalyzed RNA polymerization." Nat.Struct.Mol.Biol., 18, 1036-1042. doi: 10.1038/nsmb.2107. Crystal structure of the class i ligase ribozyme-substrate preligation complex, c47u mutant, ca2+ bound. SNAP output
3r1l RNA binding protein-RNA X-ray (3.125 Å) Shechner DM, Bartel DP (2011) "The structural basis of RNA-catalyzed RNA polymerization." Nat.Struct.Mol.Biol., 18, 1036-1042. doi: 10.1038/nsmb.2107. Crystal structure of the class i ligase ribozyme-substrate preligation complex, c47u mutant, mg2+ bound. SNAP output
3r2c transcription-RNA X-ray (1.902 Å) Stagno JR, Altieri AS, Bubunenko M, Tarasov SG, Li J, Court DL, Byrd RA, Ji X (2011) "Structural basis for RNA recognition by NusB and NusE in the initiation of transcription antitermination." Nucleic Acids Res., 39, 7803-7815. doi: 10.1093/nar/gkr418. Crystal structure of antitermination factors nusb and nuse in complex with boxa RNA. SNAP output
3r2d transcription-RNA X-ray (2.199 Å) Stagno JR, Altieri AS, Bubunenko M, Tarasov SG, Li J, Court DL, Byrd RA, Ji X (2011) "Structural basis for RNA recognition by NusB and NusE in the initiation of transcription antitermination." Nucleic Acids Res., 39, 7803-7815. doi: 10.1093/nar/gkr418. Crystal structure of antitermination factors nusb and nuse in complex with dsrna. SNAP output
3r9w hydrolase-RNA X-ray (2.05 Å) Tu C, Zhou X, Tarasov SG, Tropea JE, Austin BP, Waugh DS, Court DL, Ji X (2011) "The Era GTPase recognizes the GAUCACCUCC sequence and binds helix 45 near the 3' end of 16S rRNA." Proc.Natl.Acad.Sci.USA, 108, 10156-10161. doi: 10.1073/pnas.1017679108. Crystal structure of era in complex with mggdpnp and nucleotides 1506-1542 of 16s ribosomal RNA. SNAP output
3r9x hydrolase-transferase-RNA X-ray (2.8 Å) Tu C, Zhou X, Tarasov SG, Tropea JE, Austin BP, Waugh DS, Court DL, Ji X (2011) "The Era GTPase recognizes the GAUCACCUCC sequence and binds helix 45 near the 3' end of 16S rRNA." Proc.Natl.Acad.Sci.USA, 108, 10156-10161. doi: 10.1073/pnas.1017679108. Crystal structure of era in complex with mggdpnp, nucleotides 1506-1542 of 16s ribosomal RNA, and ksga. SNAP output
3rc8 hydrolase-RNA X-ray (2.9 Å) Jedrzejczak R, Wang J, Dauter M, Szczesny RJ, Stepien PP, Dauter Z (2011) "Human Suv3 protein reveals unique features among SF2 helicases." Acta Crystallogr.,Sect.D, 67, 988-996. doi: 10.1107/S0907444911040248. Human mitochondrial helicase suv3 in complex with short RNA fragment. SNAP output
3rer chaperone-RNA X-ray (1.7 Å) Wang W, Wang L, Zou Y, Zhang J, Gong Q, Wu J, Shi Y (2011) "Cooperation of Escherichia coli Hfq hexamers in DsrA binding." Genes Dev., 25, 2106-2117. doi: 10.1101/gad.16746011. Crystal structure of e. coli hfq in complex with au6a RNA and adp. SNAP output
3rtj hydrolase-RNA X-ray (3.0 Å) Monzingo AF, Robertus JD (1992) "X-ray analysis of substrate analogs in the ricin A-chain active site." J.Mol.Biol., 227, 1136-1145. Crystal structure of ricin bound with dinucleotide apg. SNAP output
3rw6 transport protein-RNA X-ray (2.3 Å) Teplova M, Wohlbold L, Khin NW, Izaurralde E, Patel DJ (2011) "Structure-function studies of nucleocytoplasmic transport of retroviral genomic RNA by mRNA export factor TAP." Nat.Struct.Mol.Biol., 18, 990-998. doi: 10.1038/nsmb.2094. Structure of nuclear RNA export factor tap bound to cte RNA. SNAP output
3s4g virus X-ray (6.0 Å) Lane SW, Dennis CA, Lane CL, Trinh CH, Rizkallah PJ, Stockley PG, Phillips SE (2011) "Construction and crystal structure of recombinant STNV capsids." J.Mol.Biol., 413, 41-50. doi: 10.1016/j.jmb.2011.07.062. Low resolution structure of stnv complexed with RNA. SNAP output
3siu splicing-RNA X-ray (2.626 Å) Liu S, Ghalei H, Luhrmann R, Wahl MC (2011) "Structural basis for the dual U4 and U4atac snRNA-binding specificity of spliceosomal protein hPrp31." Rna, 17, 1655-1663. doi: 10.1261/rna.2690611. Structure of a hprp31-15.5k-u4atac 5' stem loop complex, monomeric form. SNAP output
3siv splicing-RNA X-ray (3.304 Å) Liu S, Ghalei H, Luhrmann R, Wahl MC (2011) "Structural basis for the dual U4 and U4atac snRNA-binding specificity of spliceosomal protein hPrp31." Rna, 17, 1655-1663. doi: 10.1261/rna.2690611. Structure of a hprp31-15.5k-u4atac 5' stem loop complex, dimeric form. SNAP output
3sn2 lyase-RNA X-ray (2.99 Å) Walden WE, Selezneva A, Volz K (2012) "Accommodating variety in iron-responsive elements: Crystal structure of transferrin receptor 1 B IRE bound to iron regulatory protein 1." Febs Lett., 586, 32-35. doi: 10.1016/j.febslet.2011.11.018. Crystal structure analysis of iron regulatory protein 1 in complex with transferrin receptor ire b RNA. SNAP output
3snp lyase-RNA X-ray (2.8 Å) Walden WE, Selezneva AI, Dupuy J, Volbeda A, Fontecilla-Camps JC, Theil EC, Volz K (2006) "Structure of dual function iron regulatory protein 1 complexed with ferritin IRE-RNA." Science, 314, 1903-1908. doi: 10.1126/science.1133116. Crystal structure analysis of iron regulatory protein 1 in complex with ferritin h ire RNA. SNAP output
3sqw hydrolase-RNA X-ray (1.909 Å) Mohr G, Del Campo M, Turner KG, Gilman B, Wolf RZ, Lambowitz AM (2011) "High-Throughput Genetic Identification of Functionally Important Regions of the Yeast DEAD-Box Protein Mss116p." J.Mol.Biol., 413, 952-972. doi: 10.1016/j.jmb.2011.09.015. Structure of mss116p (nte deletion) bound to ssrna and amp-pnp. SNAP output
3sqx hydrolase-RNA X-ray (2.112 Å) Mohr G, Del Campo M, Turner KG, Gilman B, Wolf RZ, Lambowitz AM (2011) "High-Throughput Genetic Identification of Functionally Important Regions of the Yeast DEAD-Box Protein Mss116p." J.Mol.Biol., 413, 952-972. doi: 10.1016/j.jmb.2011.09.015. Structure of mss116p (nte and c-tail double deletion) bound to ssrna and amp-pnp. SNAP output
3t1h ribosome-antibiotic X-ray (3.11 Å) Vendeix FA, Murphy FV, Cantara WA, Leszczynska G, Gustilo EM, Sproat B, Malkiewicz A, Agris PF (2012) "Human tRNA(Lys3)(UUU) Is Pre-Structured by Natural Modifications for Cognate and Wobble Codon Binding through Keto-Enol Tautomerism." J.Mol.Biol., 416, 467-485. doi: 10.1016/j.jmb.2011.12.048. Structure of the thermus thermophilus 30s ribosomal subunit complexed with a human anti-codon stem loop (hasl) of transfer RNA lysine 3 (trnalys3) bound to an mrna with an aaa-codon in the a-site and paromomycin. SNAP output
3t1y ribosome-antibiotic X-ray (2.8 Å) Vendeix FA, Murphy FV, Cantara WA, Leszczynska G, Gustilo EM, Sproat B, Malkiewicz A, Agris PF (2012) "Human tRNA(Lys3)(UUU) Is Pre-Structured by Natural Modifications for Cognate and Wobble Codon Binding through Keto-Enol Tautomerism." J.Mol.Biol., 416, 467-485. doi: 10.1016/j.jmb.2011.12.048. Structure of the thermus thermophilus 30s ribosomal subunit complexed with a human anti-codon stem loop (hasl) of transfer RNA lysine 3 (trnalys3) bound to an mrna with an aag-codon in the a-site and paromomycin. SNAP output
3t3n hydrolase-RNA X-ray (3.09 Å) Dorleans A, Li de la Sierra-Gallay I, Piton J, Zig L, Gilet L, Putzer H, Condon C (2011) "Molecular Basis for the Recognition and Cleavage of RNA by the Bifunctional 5'-3' Exo/Endoribonuclease RNase J." Structure, 19, 1252-1261. doi: 10.1016/j.str.2011.06.018. Molecular basis for the recognition and cleavage of RNA (uuccgu) by the bifunctional 5'-3' exo-endoribonuclease rnase j. SNAP output
3t3o hydrolase-RNA X-ray (2.5 Å) Dorleans A, Li de la Sierra-Gallay I, Piton J, Zig L, Gilet L, Putzer H, Condon C (2011) "Molecular Basis for the Recognition and Cleavage of RNA by the Bifunctional 5'-3' Exo/Endoribonuclease RNase J." Structure, 19, 1252-1261. doi: 10.1016/j.str.2011.06.018. Molecular basis for the recognition and cleavage of RNA (cugg) by the bifunctional 5'-3' exo-endoribonuclease rnase j. SNAP output
3t5n viral protein-RNA X-ray (1.787 Å) Hastie KM, Liu T, Li S, King LB, Ngo N, Zandonatti MA, Woods VL, de la Torre JC, Saphire EO (2011) "Crystal structure of the Lassa virus nucleoprotein-RNA complex reveals a gating mechanism for RNA binding." Proc.Natl.Acad.Sci.USA, 108, 19365-19370. doi: 10.1073/pnas.1108515108. 1.8a crystal structure of lassa virus nucleoprotein in complex with ssrna. SNAP output
3t5q viral protein-RNA X-ray (3.0 Å) Hastie KM, Liu T, Li S, King LB, Ngo N, Zandonatti MA, Woods VL, de la Torre JC, Saphire EO (2011) "Crystal structure of the Lassa virus nucleoprotein-RNA complex reveals a gating mechanism for RNA binding." Proc.Natl.Acad.Sci.USA, 108, 19365-19370. doi: 10.1073/pnas.1108515108. 3a structure of lassa virus nucleoprotein in complex with ssrna. SNAP output
3trz RNA binding protein-RNA X-ray (2.9 Å) Nam Y, Chen C, Gregory RI, Chou JJ, Sliz P (2011) "Molecular Basis for Interaction of let-7 MicroRNAs with Lin28." Cell(Cambridge,Mass.), 147, 1080-1091. doi: 10.1016/j.cell.2011.10.020. Mouse lin28a in complex with let-7d microrna pre-element. SNAP output
3ts0 RNA binding protein-RNA X-ray (2.763 Å) Nam Y, Chen C, Gregory RI, Chou JJ, Sliz P (2011) "Molecular Basis for Interaction of let-7 MicroRNAs with Lin28." Cell(Cambridge,Mass.), 147, 1080-1091. doi: 10.1016/j.cell.2011.10.020. Mouse lin28a in complex with let-7f-1 microrna pre-element. SNAP output
3ts2 RNA binding protein-RNA X-ray (2.01 Å) Nam Y, Chen C, Gregory RI, Chou JJ, Sliz P (2011) "Molecular Basis for Interaction of let-7 MicroRNAs with Lin28." Cell(Cambridge,Mass.), 147, 1080-1091. doi: 10.1016/j.cell.2011.10.020. Mouse lin28a in complex with let-7g microrna pre-element. SNAP output
3tup ligase-RNA X-ray (3.05 Å) Klipcan L, Moor N, Finarov I, Kessler N, Sukhanova M, Safro MG (2012) "Crystal Structure of Human Mitochondrial PheRS Complexed with tRNA(Phe) in the Active "Open" State." J.Mol.Biol., 415, 527-537. doi: 10.1016/j.jmb.2011.11.029. Crystal structure of human mitochondrial phers complexed with trnaphe in the active open state. SNAP output
3u2e lyase-RNA X-ray (2.32 Å) Filippova EV, Minasov G, Shuvalova L, Kiryukhina O, Massa C, Schirmer T, Joachimiak A, Anderson WF, Midwest Center for Structural Genomics (MCSG) "EAL domain from Caulobacter crescentus in complex with 5'-pGpG and Mg++." Eal domain of phosphodiesterase pdea in complex with 5'-pgpg and mg++. SNAP output
3u4m RNA-RNA binding protein X-ray (2.0 Å) Tishchenko S, Gabdulkhakov A, Nevskaya N, Sarskikh A, Kostareva O, Nikonova E, Sycheva A, Moshkovskii S, Garber M, Nikonov S (2012) "High-resolution crystal structure of the isolated ribosomal L1 stalk." Acta Crystallogr.,Sect.D, 68, 1051-1057. doi: 10.1107/S0907444912020136. Crystal structure of ribosomal protein tthl1 in complex with 80nt 23s RNA from thermus thermophilus. SNAP output
3u56 RNA-RNA binding protein X-ray (2.1 Å) Tishchenko SV, Nikonova EY, Kostareva OS, Gabdulkhakov AG, Sarskikh AV, Piendl W, Nikonov SV, Garber MB, Nevskaya NA "Crystal structure of ribosomal protein tthl1 in complex with 80nt 23s rna from thermus thermophilus." Crystal structure of mutant ribosomal protein t217v tthl1 in complex with 80nt 23s RNA from thermus thermophilus. SNAP output
3ucu signaling protein-RNA X-ray (2.8 Å) Smith KD, Lipchock SV, Strobel SA (2012) "Structural and biochemical characterization of linear dinucleotide analogues bound to the c-di-GMP-I aptamer." Biochemistry, 51, 425-432. doi: 10.1021/bi2016662. The c-di-gmp-i riboswitch bound to pgpg. SNAP output
3ucz signaling protein-RNA X-ray (2.8 Å) Smith KD, Lipchock SV, Strobel SA (2012) "Structural and biochemical characterization of linear dinucleotide analogues bound to the c-di-GMP-I aptamer." Biochemistry, 51, 425-432. doi: 10.1021/bi2016662. The c-di-gmp-i riboswitch bound to gpg. SNAP output
3ud3 signaling protein-RNA X-ray (3.1 Å) Smith KD, Lipchock SV, Strobel SA (2012) "Structural and biochemical characterization of linear dinucleotide analogues bound to the c-di-GMP-I aptamer." Biochemistry, 51, 425-432. doi: 10.1021/bi2016662. The c92u mutant c-di-gmp-i riboswitch bound to pgpa. SNAP output
3ud4 signaling protein-RNA X-ray (2.7 Å) Smith KD, Lipchock SV, Strobel SA (2012) "Structural and biochemical characterization of linear dinucleotide analogues bound to the c-di-GMP-I aptamer." Biochemistry, 51, 425-432. doi: 10.1021/bi2016662. The c92u mutant c-di-gmp-i riboswitch bound to gpa. SNAP output
3umy rrna binding protein-RNA X-ray (1.9 Å) Tishchenko SV, Nikonova EY, Kostareva OS, Gabdulkhakov AG, Sarskikh AV, Piendl W, Nikonov SV, Garber MB, Nevskaya NA "Crystal structure of mutant ribosomal protein T217A TthL1 in complex with 80nt 23S RNA from Thermus thermophilus." Crystal structure of mutant ribosomal protein t217a tthl1 in complex with 80nt 23s RNA from thermus thermophilus. SNAP output
3uzs transferase-RNA X-ray (4.52 Å) Tesmer VM, Lennarz S, Mayer G, Tesmer JJ (2012) "Molecular mechanism for inhibition of g protein-coupled receptor kinase 2 by a selective RNA aptamer." Structure, 20, 1300-1309. doi: 10.1016/j.str.2012.05.002. Structure of the c13.28 RNA aptamer bound to the g protein-coupled receptor kinase 2-heterotrimeric g protein beta 1 and gamma 2 subunit complex. SNAP output
3uzt transferase-RNA X-ray (3.51 Å) Tesmer VM, Lennarz S, Mayer G, Tesmer JJ (2012) "Molecular mechanism for inhibition of g protein-coupled receptor kinase 2 by a selective RNA aptamer." Structure, 20, 1300-1309. doi: 10.1016/j.str.2012.05.002. Structure of the c13.18 RNA aptamer in complex with g protein-coupled receptor kinase 2. SNAP output
3v11 translation-RNA X-ray (5.0 Å) Schmitt E, Panvert M, Lazennec-Schurdevin C, Coureux PD, Perez J, Thompson A, Mechulam Y (2012) "Structure of the ternary initiation complex aIF2-GDPNP-methionylated initiator tRNA." Nat.Struct.Mol.Biol., 19, 450-454. doi: 10.1038/nsmb.2259. Structure of the ternary initiation complex aif2:gdpnp:methionylated initiator trna. SNAP output
3v6y RNA binding protein-RNA X-ray (2.5 Å) Qiu C, Kershner A, Wang Y, Holley CH, Wilinski D, Keles S, Kimble J, Wickens M, Hall TMT (2012) "Divergence of PUF protein specificity through variations in an RNA-binding pocket." J.Biol.Chem. Crystal structure of fbf-2 in complex with a mutant gld-1 fbea13 RNA. SNAP output
3v71 RNA binding protein-RNA X-ray (2.902 Å) Qiu C, Kershner A, Wang Y, Holley CH, Wilinski D, Keles S, Kimble J, Wickens M, Hall TMT (2012) "Divergence of PUF protein specificity through variations in an RNA-binding pocket." J.Biol.Chem. Crystal structure of puf-6 in complex with 5be13 RNA. SNAP output
3v74 RNA binding protein-RNA X-ray (2.3 Å) Wang Y, Qiu C, Kershner A, Holley CP, Wilinski D, Keles S, Kimble J, Wickens M, Hall TMT (2012) "Divergence of PUF protein specificity through variations in an RNA-binding pocket." J.Biol.Chem. Crystal structure of fbf-2 in complex with gld-1 fbea13 RNA. SNAP output
3v7e ribosomal protein-RNA X-ray (2.8 Å) Baird NJ, Zhang J, Hamma T, Ferre-D'Amare AR (2012) "YbxF and YlxQ are bacterial homologs of L7Ae and bind K-turns but not K-loops." Rna, 18, 759-770. doi: 10.1261/rna.031518.111. Crystal structure of ybxf bound to the sam-i riboswitch aptamer. SNAP output
3vjr hydrolase-RNA X-ray (2.4 Å) Ito K, Murakami R, Mochizuki M, Qi H, Shimizu Y, Miura K, Ueda T, Uchiumi T (2012) "Structural basis for the substrate recognition and catalysis of peptidyl-tRNA hydrolase." Nucleic Acids Res., 40, 10521-10531. doi: 10.1093/nar/gks790. Crystal structure of peptidyl-trna hydrolase from escherichia coli in complex with the cca-acceptor-t[psi]c domain of trna. SNAP output
3vnu translation, transferase-RNA X-ray (3.2 Å) Takeshita D, Yamashita S, Tomita K (2012) "Mechanism for template-independent terminal adenylation activity of Q beta replicase." Structure, 20, 1661-1669. doi: 10.1016/j.str.2012.07.004. Complex structure of viral RNA polymerase i. SNAP output
3vnv translation, transferase-RNA X-ray (2.604 Å) Takeshita D, Yamashita S, Tomita K (2012) "Mechanism for template-independent terminal adenylation activity of Q beta replicase." Structure, 20, 1661-1669. doi: 10.1016/j.str.2012.07.004. Complex structure of viral RNA polymerase ii. SNAP output
3vyx hydrolase-RNA X-ray (2.29 Å) Fu Q, Yuan YA (2013) "Structural insights into RISC assembly facilitated by dsRNA-binding domains of human RNA helicase A (DHX9)." Nucleic Acids Res. doi: 10.1093/nar/gkt042. Structural insights into risc assembly facilitated by dsrna binding domains of human RNA helicase (dhx9). SNAP output
3vyy hydrolase-RNA X-ray (2.9 Å) Fu Q, Yuan YA (2013) "Structural insights into RISC assembly facilitated by dsRNA-binding domains of human RNA helicase A (DHX9)." Nucleic Acids Res. doi: 10.1093/nar/gkt042. Structural insights into risc assembly facilitated by dsrna binding domains of human RNA helicase a (dhx9). SNAP output
3w1k transferase-RNA X-ray (7.5 Å) Itoh Y, Brocker MJ, Sekine S, Hammond G, Suetsugu S, Soll D, Yokoyama S (2013) "Decameric SelA-tRNA(Sec) ring structure reveals mechanism of bacterial selenocysteine formation." Science, 340, 75-78. doi: 10.1126/science.1229521. Crystal structure of the selenocysteine synthase sela and trnasec complex. SNAP output
3w3s ligase-RNA X-ray (3.095 Å) Itoh Y, Sekine S, Suetsugu S, Yokoyama S (2013) "Tertiary structure of bacterial selenocysteine tRNA." Nucleic Acids Res., 41, 6729-6738. doi: 10.1093/nar/gkt321. Crystal structure of a. aeolicus trnasec in complex with m. kandleri serrs. SNAP output
3wbm RNA binding protein-RNA X-ray (2.0 Å) Guo L, Ding J, Guo R, Hou Y, Wang DC, Huang L (2014) "Biochemical and structural insights into RNA binding by Ssh10b, a member of the highly conserved Sac10b protein family in Archaea." J.Biol.Chem., 289, 1478-1490. doi: 10.1074/jbc.M113.521351. Crystal structure of protein-RNA complex. SNAP output
3wc1 transferase-RNA X-ray (4.18 Å) Nakamura A, Nemoto T, Heinemann IU, Yamashita K, Sonoda T, Komoda K, Tanaka I, Soll D, Yao M (2013) "Structural basis of reverse nucleotide polymerization." Proc.Natl.Acad.Sci.USA, 110, 20970-20975. doi: 10.1073/pnas.1321312111. Crystal structure of c. albicans trna(his) guanylyltransferase (thg1) with a g-1 deleted trna(his). SNAP output
3wc2 transferase-RNA X-ray (3.641 Å) Nakamura A, Nemoto T, Heinemann IU, Yamashita K, Sonoda T, Komoda K, Tanaka I, Soll D, Yao M (2013) "Structural basis of reverse nucleotide polymerization." Proc.Natl.Acad.Sci.USA, 110, 20970-20975. doi: 10.1073/pnas.1321312111. Crystal structure of c. albicans trna(his) guanylyltransferase (thg1) with a trna(phe)(gug). SNAP output
3wfq transferase-RNA X-ray (3.619 Å) Yamashita S, Takeshita D, Tomita K (2014) "Translocation and rotation of tRNA during template-independent RNA polymerization by tRNA nucleotidyltransferase." Structure, 22, 315-325. doi: 10.1016/j.str.2013.12.002. Trna processing enzyme complex 1. SNAP output
3wfr transferase-RNA X-ray (3.501 Å) Yamashita S, Takeshita D, Tomita K (2014) "Translocation and rotation of tRNA during template-independent RNA polymerization by tRNA nucleotidyltransferase." Structure, 22, 315-325. doi: 10.1016/j.str.2013.12.002. Trna processing enzyme complex 2. SNAP output
3wfs transferase-RNA X-ray (3.311 Å) Yamashita S, Takeshita D, Tomita K (2014) "Translocation and rotation of tRNA during template-independent RNA polymerization by tRNA nucleotidyltransferase." Structure, 22, 315-325. doi: 10.1016/j.str.2013.12.002. Trna processing enzyme complex 3. SNAP output
3wqy ligase-RNA X-ray (3.3 Å) Naganuma M, Sekine S, Chong YE, Guo M, Yang XL, Gamper H, Hou YM, Schimmel P, Yokoyama S (2014) "The selective tRNA aminoacylation mechanism based on a single G.U pair." Nature, 510, 507-511. doi: 10.1038/nature13440. Crystal structure of archaeoglobus fulgidus alanyl-trna synthetase in complex with wild-type trna(ala) having g3.u70. SNAP output
3wqz ligase-RNA X-ray (3.489 Å) Naganuma M, Sekine S, Chong YE, Guo M, Yang XL, Gamper H, Hou YM, Schimmel P, Yokoyama S (2014) "The selective tRNA aminoacylation mechanism based on a single G.U pair." Nature, 510, 507-511. doi: 10.1038/nature13440. Crystal structure of archaeoglobus fulgidus alanyl-trna synthetase in complex with a trna(ala) variant having a3.u70. SNAP output
3wzi transcription-RNA X-ray (2.9 Å) Yan X, Guo W, Yuan YA (2015) "Crystal structures of CRISPR-associated Csx3 reveal a manganese-dependent deadenylation exoribonuclease." Rna Biol. doi: 10.1080/15476286.2015.1051300. Crystal structure of afcsx3 in complex with ssrna. SNAP output
3zc0 hydrolase-RNA X-ray (2.982 Å) Parizotto EA, Lowe ED, Parker JS (2013) "Structural Basis for Duplex RNA Recognition and Cleavage by Archaeoglobus Fulgidus C3Po." Nat.Struct.Mol.Biol., 20, 380. doi: 10.1038/NSMB.2487. Structure of afc3po - duplex RNA complex. SNAP output
3zd6 hydrolase-RNA X-ray (2.8 Å) Kohlway A, Luo D, Rawling DC, Ding SC, Pyle AM (2013) "Defining the Functional Determinants for RNA Surveillance by Rig-I." Embo Rep., 14, 772. doi: 10.1038/EMBOR.2013.108. Snapshot 1 of rig-i scanning on RNA duplex. SNAP output
3zd7 hydrolase-RNA X-ray (2.5 Å) Kohlway A, Luo D, Rawling DC, Ding SC, Pyle AM (2013) "Defining the Functional Determinants for RNA Surveillance by Rig-I." Embo Rep., 14, 772. doi: 10.1038/EMBOR.2013.108. Snapshot 3 of rig-i scanning on RNA duplex. SNAP output
3zgz ligase-RNA X-ray (2.4 Å) Chopra S, Palencia A, Virus C, Tripathy A, Temple BR, Velazquez-Campoy A, Cusack S, Reader JS (2013) "Plant Tumour Biocontrol Agent Employs a tRNA-Dependent Mechanism to Inhibit Leucyl-tRNA Synthetase." Nat.Commun., 4, 1417. doi: 10.1038/NCOMMS2421. Ternary complex of e. coli leucyl-trna synthetase, trna(leu) and toxic moiety from agrocin 84 (tm84) in aminoacylation-like conformation. SNAP output
3zjt ligase-RNA X-ray (2.2 Å) Hernandez V, Crepin T, Palencia A, Cusack S, Akama T, Baker SJ, Bu W, Feng L, Freund YR, Liu L, Meewan M, Mohan M, Mao W, Rock FL, Sexton H, Sheoran A, Zhang Y, Zhang Y, Zhou Y, Nieman JA, Anugula MR, Keramane EM, Savariraj K, Reddy DS, Sharma R, Subedi R, Singh R, O'Leary A, Simon NL, De Marsh PL, Mushtaq S, Warner M, Livermore DM, Alley MRK, Plattner JJ (2013) "Discovery of a Novel Class of Boron-Based Antibacterials with Activity Against Gram-Negative Bacteria." Antimicrob.Agents Chemother., 57, 1394. doi: 10.1128/AAC.02058-12. Ternary complex of e.coli leucyl-trna synthetase, trna(leu)574 and the benzoxaborole an3017 in the editing conformation. SNAP output
3zju ligase-RNA X-ray (2.4 Å) Hernandez V, Crepin T, Palencia A, Cusack S, Akama T, Baker SJ, Bu W, Feng L, Freund YR, Liu L, Meewan M, Mohan M, Mao W, Rock FL, Sexton H, Sheoran A, Zhang Y, Zhang Y, Zhou Y, Nieman JA, Anugula MR, Keramane EM, Savariraj K, Reddy DS, Sharma R, Subedi R, Singh R, O'Leary A, Simon NL, De Marsh PL, Mushtaq S, Warner M, Livermore DM, Alley MRK, Plattner JJ (2013) "Discovery of a Novel Class of Boron-Based Antibacterials with Activity Against Gram-Negative Bacteria." Antimicrob.Agents Chemother., 57, 1394. doi: 10.1128/AAC.02058-12. Ternary complex of e .coli leucyl-trna synthetase, trna(leu) and the benzoxaborole an3016 in the editing conformation. SNAP output
3zjv ligase-RNA X-ray (2.31 Å) Hernandez V, Crepin T, Palencia A, Cusack S, Akama T, Baker SJ, Bu W, Feng L, Freund YR, Liu L, Meewan M, Mohan M, Mao W, Rock FL, Sexton H, Sheoran A, Zhang Y, Zhang Y, Zhou Y, Nieman JA, Anugula MR, Keramane EM, Savariraj K, Reddy DS, Sharma R, Subedi R, Singh R, O'Leary A, Simon NL, De Marsh PL, Mushtaq S, Warner M, Livermore DM, Alley MRK, Plattner JJ (2013) "Discovery of a Novel Class of Boron-Based Antibacterials with Activity Against Gram-Negative Bacteria." Antimicrob.Agents Chemother., 57, 1394. doi: 10.1128/AAC.02058-12. Ternary complex of e .coli leucyl-trna synthetase, trna(leu) and the benzoxaborole an3213 in the editing conformation. SNAP output
3zla viral protein-RNA X-ray (3.2 Å) Ariza A, Tanner SJ, Walter CT, Dent KC, Shepherd DA, Wu W, Matthews SV, Hiscox JA, Green TJ, Luo M, Elliott RM, Fooks AR, Ashcroft AE, Stonehouse NJ, Ranson NA, Barr JN, Edwards TA (2013) "Nucleocapsid Protein Structures from Orthobunyaviruses Reveal Insight Into Ribonucleoprotein Architecture and RNA Polymerization." Nucleic Acids Res., 41, 5912. doi: 10.1093/NAR/GKT268. Crystal structure of the nucleocapsid protein from bunyamwera virus bound to RNA. SNAP output
3zn8 protein transport cryo-EM (12.0 Å) Von Loeffelholz O, Knoops K, Ariosa A, Zhang X, Karuppasamy M, Huard K, Schoehn G, Berger I, Shan SO, Schaffitzel C (2013) "Structural Basis of Signal Sequence Surveillance and Selection by the Srp-Sr Complex." Nat.Struct.Mol.Biol., 20, 604. doi: 10.1038/NSMB.2546. Structural basis of signal sequence surveillance and selection by the srp-sr complex. SNAP output
484d RNA binding protein-RNA NMR Ye X, Gorin A, Frederick R, Hu W, Majumdar A, Xu W, McLendon G, Ellington A, Patel DJ (1999) "RNA architecture dictates the conformations of a bound peptide." Chem.Biol., 6, 657-669. doi: 10.1016/S1074-5521(99)80117-3. Solution structure of hiv-1 rev peptide-RNA aptamer complex. SNAP output
4a2i ribosome-hydrolase cryo-EM (16.5 Å) Jomaa A, Stewart G, Mears JA, Kireeva I, Brown ED, Ortega J (2011) "Cryo-Electron Microscopy Structure of the 30S Subunit in Complex with the Yjeq Biogenesis Factor." RNA, 17, 2026. doi: 10.1261/RNA.2922311. Cryo-electron microscopy structure of the 30s subunit in complex with the yjeq biogenesis factor. SNAP output
4a2x RNA binding protein-RNA X-ray (4.0 Å) Kowalinski E, Lunardi T, McCarthy AA, Louber J, Brunel J, Grigorov B, Gerlier D, Cusack S (2011) "Structural basis for the activation of innate immune pattern-recognition receptor RIG-I by viral RNA." Cell, 147, 423-435. doi: 10.1016/j.cell.2011.09.039. Structure of duck rig-i c-terminal domain (ctd) with 14-mer dsrna. SNAP output
4a36 RNA binding protein-RNA X-ray (3.7 Å) Kowalinski E, Lunardi T, Mccarthy AA, Louber J, Brunel J, Grigorov B, Gerlier D, Cusack S (2011) "Structural Basis for the Activation of Innate Immune Pattern Recognition Receptor Rig-I by Viral RNA." Cell(Cambridge,Mass.), 147, 423. doi: 10.1016/J.CELL.2011.09.039. Structure of duck rig-i helicase domain bound to 19-mer dsrna and atp transition state analogue. SNAP output
4adv translation cryo-EM (13.5 Å) Boehringer D, O'Farrell HC, Rife JP, Ban N (2012) "Structural Insights Into Methyltransferase Ksga Function in 30S Ribosomal Subunit Biogenesis." J.Biol.Chem., 287, 10453-10459. doi: 10.1074/JBC.M111.318121. Structure of the e. coli methyltransferase ksga bound to the e. coli 30s ribosomal subunit. SNAP output
4afy hydrolase X-ray (2.01 Å) Robert-Paganin J, Nonin-Lecomte S, Rety S (2012) "Crystal Structure of an Eal Domain in Complex with Reaction Product 5'-Pgpg." Plos One, 7, 52424. doi: 10.1371/JOURNAL.PONE.0052424. Crystal structure of the fimx eal domain in complex with reaction product pgpg. SNAP output
4al5 hydrolase-RNA X-ray (2.0 Å) Haurwitz RE, Sternberg SH, Doudna JA (2012) "Csy4 Relies on an Unusual Catalytic Dyad to Position and Cleave Crispr RNA." Embo J., 31, 2824. doi: 10.1038/EMBOJ.2012.107. Crystal structure of the csy4-crrna product complex. SNAP output
4al6 hydrolase-RNA X-ray (2.63 Å) Haurwitz RE, Sternberg SH, Doudna JA (2012) "Csy4 Relies on an Unusual Catalytic Dyad to Position and Cleave Crispr RNA." Embo J., 31, 2824. doi: 10.1038/EMBOJ.2012.107. Crystal structure of the s148acsy4-crrna complex. SNAP output
4al7 hydrolase-RNA X-ray (2.32 Å) Haurwitz RE, Sternberg SH, Doudna JA (2012) "Csy4 Relies on an Unusual Catalytic Dyad to Position and Cleave Crispr RNA." Embo J., 31, 2824. doi: 10.1038/EMBOJ.2012.10. Crystal structure of the csy4-minimal crrna complex. SNAP output
4alp chaperone-RNA X-ray (1.48 Å) Mayr F, Schutz A, Doge N, Heinemann U (2012) "The Lin28 Cold-Shock Domain Remodels Pre-Let-7 Microrna." Nucleic Acids Res., 40, 7492. doi: 10.1093/NAR/GKS355. The lin28b cold shock domain in complex with hexauridine. SNAP output
4ang virus X-ray (3.5 Å) Persson M, Tars K, Liljas L (2013) "Prr1 Coat Protein Binding to its RNA Translational Operator." Acta Crystallogr.,Sect.D, 69, 367. doi: 10.1107/S0907444912047464. Small RNA phage prr1 in complex with an RNA operator fragment. SNAP output
4aq7 ligase-RNA X-ray (2.5 Å) Palencia A, Crepin T, Vu MT, Lincecum Jr TL, Martinis SA, Cusack S (2012) "Structural Dynamics of the Aminoacylation and Proofreading Functional Cycle of Bacterial Leucyl-tRNA Synthetase." Nat.Struct.Mol.Biol., 19, 677. doi: 10.1038/NSMB.2317. Ternary complex of e. coli leucyl-trna synthetase, trna(leu) and leucyl-adenylate analogue in the aminoacylation conformation. SNAP output
4aqy ribosome X-ray (3.5 Å) Matt T, Ng CL, Lang K, Sha SH, Akbergenov R, Shcherbakov D, Meyer M, Duscha S, Xie J, Dubbaka SR, Perez-Fernandez D, Vasella A, Ramakrishnan V, Schacht J, Bottger EC (2012) "Dissociation of Antibacterial Activity and Aminoglycoside Ototoxicity in the 4-Monosubstituted 2-Deoxystreptamine Apramycin." Proc.Natl.Acad.Sci.USA, 109, 10984. doi: 10.1073/PNAS.1204073109. Structure of ribosome-apramycin complexes. SNAP output
4arc ligase-RNA X-ray (2.0 Å) Palencia A, Crepin T, Vu MT, Lincecum Jr TL, Martinis SA, Cusack S (2012) "Structural Dynamics of the Aminoacylation and Proofreading Functional Cycle of Bacterial Leucyl-tRNA Synthetase." Nat.Struct.Mol.Biol., 19, 677. doi: 10.1038/NSMB.2317. Ternary complex of e. coli leucyl-trna synthetase, trna(leu) and leucine in the editing conformation. SNAP output
4ari ligase-RNA X-ray (2.08 Å) Palencia A, Crepin T, Vu MT, Lincecum Jr TL, Martinis SA, Cusack S (2012) "Structural Dynamics of the Aminoacylation and Proofreading Functional Cycle of Bacterial Leucyl-tRNA Synthetase." Nat.Struct.Mol.Biol., 19, 677. doi: 10.1038/NSMB.2317. Ternary complex of e. coli leucyl-trna synthetase, trna(leu) and the benzoxaborole an2679 in the editing conformation. SNAP output
4as1 ligase-RNA X-ray (2.02 Å) Palencia A, Crepin T, Vu MT, Lincecum Jr TL, Martinis SA, Cusack S (2012) "Structural Dynamics of the Aminoacylation and Proofreading Functional Cycle of Bacterial Leucyl-tRNA Synthetase." Nat.Struct.Mol.Biol., 19, 677. doi: 10.1038/NSMB.2317. Ternary complex of e. coli leucyl-trna synthetase, trna(leu) and the benzoxaborole an2679 in the editing conformation. SNAP output
4ato toxin-antitoxin X-ray (2.2 Å) Short FL, Pei XY, Blower TR, Ong SL, Fineran PC, Luisi BF, Salmond GPC (2013) "Selectivity and Self-Assembly in the Control of a Bacterial Toxin by an Antitoxic Noncoding RNA Pseudoknot." Proc.Natl.Acad.Sci.USA, 110, E241. doi: 10.1073/PNAS.1216039110. New insights into the mechanism of bacterial type iii toxin-antitoxin systems: selective toxin inhibition by a non-coding RNA pseudoknot. SNAP output
4ay2 hydrolase-RNA X-ray (2.8 Å) Luo D, Kohlway A, Vela A, Pyle AM (2012) "Visualizing the Determinants of Viral RNA Recognition by Innate Immune Sensor Rig-I." Structure, 20, 1983. doi: 10.1016/J.STR.2012.08.029. Capturing 5' tri-phosphorylated RNA duplex by rig-i. SNAP output
4b3g hydrolase-RNA X-ray (2.85 Å) Lim SC, Bowler MW, Lai TF, Song H (2012) "The Ighmbp2 Helicase Structure Reveals the Molecular Basis for Disease-Causing Mutations in Dmsa1." Nucleic Acids Res., 40, 11009. doi: 10.1093/NAR/GKS792. Crystal structure of ighmbp2 helicase in complex with RNA. SNAP output
4b3m ribosome X-ray (2.9 Å) Perez-Fernandez D, Shcherbakov D, Matt T, Leong NC, Kudyba I, Duscha S, Boukari H, Patak R, Dubakka SR, Lang K, Meyer M, Akbergenov R, Freihofer P, Vaddi S, Thommes P, Ramakrishnan V, Vasella A, Bottger EC (2014) "4'-O-Substitutions Determine Selectivity of Aminoglycoside Antibiotics." Nat.Commun., 5, 3112. doi: 10.1038/NCOMMS4112. Crystal structure of the 30s ribosome in complex with compound 1. SNAP output
4b3r ribosome X-ray (3.0 Å) Perez-Fernandez D, Shcherbakov D, Matt T, Leong NC, Kudyba I, Duscha S, Boukari H, Patak R, Dubakka SR, Lang K, Meyer M, Akbergenov R, Freihofer P, Vaddi S, Thommes P, Ramakrishnan V, Vasella A, Bottger EC (2014) "4'-O-Substitutions Determine Selectivity of Aminoglycoside Antibiotics." Nat.Commun., 5, 3112. doi: 10.1038/NCOMMS4112. Crystal structure of the 30s ribosome in complex with compound 30. SNAP output
4b3s ribosome X-ray (3.15 Å) Perez-Fernandez D, Shcherbakov D, Matt T, Leong NC, Kudyba I, Duscha S, Boukari H, Patak R, Dubakka SR, Lang K, Meyer M, Akbergenov R, Freihofer P, Vaddi S, Thommes P, Ramakrishnan V, Vasella A, Bottger EC (2014) "4'-O-Substitutions Determine Selectivity of Aminoglycoside Antibiotics." Nat.Commun., 5, 3112. doi: 10.1038/NCOMMS4112. Crystal structure of the 30s ribosome in complex with compound 37. SNAP output
4b3t ribosome X-ray (3.0 Å) Perez-Fernandez D, Shcherbakov D, Matt T, Leong NC, Kudyba I, Duscha S, Boukari H, Patak R, Dubakka SR, Lang K, Meyer M, Akbergenov R, Freihofer P, Vaddi S, Thommes P, Ramakrishnan V, Vasella A, Bottger EC (2014) "4'-O-Substitutions Determine Selectivity of Aminoglycoside Antibiotics." Nat.Commun., 5, 3112. doi: 10.1038/NCOMMS4112. Crystal structure of the 30s ribosome in complex with compound 39. SNAP output
4b8t transcription-RNA NMR Nicastro G, Garcia-Mayoral MF, Hollingworth D, Kelly G, Martin SR, Briata P, Gherzi R, Ramos A (2012) "Noncanonical G Recognition Mediates Ksrp Regulation of Let-7 Biogenesis." Nat.Struct.Mol.Biol., 19, 1282. doi: 10.1038/NSMB.2427. RNA binding protein solution structure of the third kh domain of ksrp in complex with the g-rich target sequence.. SNAP output
4ba2 hydrolase-RNA X-ray (2.501 Å) Lorentzen E, Conti E (2012) "Crystal Structure of a 9-Subunit Archaeal Exosome in Pre-Catalytic States of the Phosphorolytic Reaction." Archaea, 2012, 21869. doi: 10.1155/2012/721869. Archaeal exosome (rrp4-rrp41(d182a)-rrp42) bound to inorganic phosphate. SNAP output
4bhh viral protein-RNA X-ray (3.4 Å) Reguera J, Malet H, Weber F, Cusack S (2013) "Structural Basis for Encapsidation of Genomic RNA by La Crosse Orthobunyavirus Nucleoprotein." Proc.Natl.Acad.Sci.USA, 110, 7246. doi: 10.1073/PNAS.1302298110. Crystal structure of tetramer of la crosse virus nucleoprotein in complex with ssrna. SNAP output
4bkk viral protein-RNA cryo-EM Bakker SE, Duquerroy S, Galloux M, Loney C, Conner E, Eleouet JF, Rey FA, Bhella D (2013) "The Respiratory Syncytial Virus Nucleoprotein-RNA Complex Forms a Left-Handed Helical Nucleocapsid." J.Gen.Virol., 94, 1734. doi: 10.1099/VIR.0.053025-0. The respiratory syncytial virus nucleoprotein-RNA complex forms a left-handed helical nucleocapsid.. SNAP output
4bpb hydrolase-RNA X-ray (2.584 Å) Luo D, Ding SC, Vela A, Kohlway A, Lindenbach BD, Pyle AM (2011) "Structural Insights Into RNA Recognition by Rig-I." Cell(Cambridge,Mass.), 147, 409. doi: 10.1016/J.CELL.2011.09.023. Structural insights into RNA recognition by rig-i. SNAP output
4bs2 transcription NMR Lukavsky PJ, Daujotyte D, Tollervey JR, Ule J, Stuani C, Buratti E, Baralle FE, Damberger FF, Allain FHT (2013) "Molecular Basis of Ug-Rich RNA Recognition by the Human Splicing Factor Tdp-43." Nat.Struct.Mol.Biol., 20, 1443. doi: 10.1038/NSMB.2698. NMR structure of human tdp-43 tandem rrms in complex with ug-rich RNA. SNAP output
4bw0 RNA-RNA binding protein X-ray (2.33 Å) Huang L, Lilley DMJ (2013) "The Molecular Recognition of Kink-Turn Structure by the L7Ae Class of Proteins." RNA, 19, 1703. doi: 10.1261/RNA.041517.113. The molecular recognition of kink turn structure by the l7ae class of proteins. SNAP output
4by9 transferase-RNA NMR Lapinaite A, Simon B, Skjaerven L, Rakwalska-Bange M, Gabel F, Carlomagno T (2013) "The Structure of the Box C/D Enzyme Reveals Regulation of RNA Methylation." Nature, 502, 519. doi: 10.1038/NATURE12581. The structure of the box cd enzyme reveals regulation of rrna methylation. SNAP output
4c4w RNA binding protein-RNA X-ray (2.95 Å) Huang L, Lilley DMJ (2014) "Structure of a Rare, Non-Standard Sequence K-Turn Bound by L7Ae Protein." Nucleic Acids Res., 42, 4734. doi: 10.1093/NAR/GKU087. Structure of a rare, non-standard sequence k-turn bound by l7ae protein. SNAP output
4c7o nuclear protein-RNA X-ray (2.6 Å) Voigts-Hoffmann F, Schmitz N, Shen K, Shan SO, Ataide SF, Ban N (2013) "The Structural Basis of Ftsy Recruitment and Gtpase Activation by Srp RNA." Mol.Cell, 52, 643. doi: 10.1016/J.MOLCEL.2013.10.005. The structural basis of ftsy recruitment and gtpase activation by srp RNA. SNAP output
4c8y RNA binding protein-RNA X-ray (1.8 Å) Niewoehner O, Jinek M, Doudna JA (2014) "Evolution of Crispr RNA Recognition and Processing by Cas6 Endonucleases." Nucleic Acids Res., 42, 1341. doi: 10.1093/NAR/GKT922. Cas6 (ttha0078) substrate mimic complex. SNAP output
4c8z hydrolase-RNA X-ray (2.503 Å) Niewoehner O, Jinek M, Doudna JA (2014) "Evolution of Crispr RNA Recognition and Processing by Cas6 Endonucleases." Nucleic Acids Res., 42, 1341. doi: 10.1093/NAR/GKT922. Cas6 (ttha0078) product complex. SNAP output
4c9d hydrolase-RNA X-ray (3.0 Å) Niewoehner O, Jinek M, Doudna JA (2014) "Evolution of CRISPR RNA recognition and processing by Cas6 endonucleases." Nucleic Acids Res., 42, 1341-1353. doi: 10.1093/nar/gkt922. Cas6 (tthb231) product complex. SNAP output
4ce4 ribosome cryo-EM (4.9 Å) Greber BJ, Boehringer D, Leitner A, Bieri P, Voigts-Hoffmann F, Erzberger JP, Leibundgut M, Aebersold R, Ban N (2014) "Architecture of the Large Subunit of the Mammalian Mitochondrial Ribosome." Nature, 505, 515. doi: 10.1038/NATURE12890. 39s large subunit of the porcine mitochondrial ribosome. SNAP output
4cio RNA binding protein-RNA NMR Amrane S, Rebora K, Zniber I, Dupuy D, Mackereth CD (2014) "Backbone-Independent Nucleic Acid Binding by Splicing Factor Sup-12 Reveals Key Aspects of Molecular Recognition." Nat.Commun., 5, 4595. doi: 10.1038/NCOMMS5595. Rrm domain from c. elegans sup-12 bound to ggugugc RNA. SNAP output
4cqn ligase-RNA X-ray (2.5 Å) Cvetesic N, Palencia A, Halasz I, Cusack S, Gruic-Sovulj I (2014) "The Physiological Target for Leurs Translational Quality Control is Norvaline." Embo J., 33, 1639. doi: 10.15252/EMBJ.201488199. Crystal structure of the e.coli leurs-trna complex with the non- cognate isoleucyl adenylate analogue. SNAP output
4csf viral protein-RNA X-ray (2.598 Å) Olal D, Dick A, Woods VL, Liu T, Li S, Devignot S, Weber F, Saphire EO, Daumke O (2014) "Structural Insights Into RNA Encapsidation and Helical Assembly of the Toscana Virus Nucleoprotein." Nucleic Acids Res., 42, 6025. doi: 10.1093/NAR/GKU229. Structural insights into toscana virus RNA encapsidation. SNAP output
4csu ribosome cryo-EM (5.5 Å) Feng B, Mandava CS, Guo Q, Wang J, Cao W, Li N, Zhang Y, Zhang Y, Wang Z, Wu J, Sanyal S, Lei J, Gao N (2014) "Structural and Functional Insights Into the Mode of Action of a Universally Conserved Obg Gtpase." Plos Biol., 12, 1866. doi: 10.1371/JOURNAL.PBIO.1001866. cryo-EM structures of the 50s ribosome subunit bound with obge. SNAP output
4cxg translation cryo-EM (8.7 Å) Budkevich TV, Giesebrecht J, Behrmann E, Loerke J, Ramrath DJ, Mielke T, Ismer J, Hildebrand PW, Tung CS, Nierhaus KH, Sanbonmatsu KY, Spahn CM (2014) "Regulation of the Mammalian Elongation Cycle by Subunit Rolling: A Eukaryotic-Specific Ribosome Rearrangement." Cell(Cambridge,Mass.), 158, 121. doi: 10.1016/J.CELL.2014.04.044. Regulation of the mammalian elongation cycle by 40s subunit rolling: a eukaryotic-specific ribosome rearrangement. SNAP output
4cxh translation cryo-EM (8.9 Å) Budkevich TV, Giesebrecht J, Behrmann E, Loerke J, Ramrath DJ, Mielke T, Ismer J, Hildebrand PW, Tung CS, Nierhaus KH, Sanbonmatsu KY, Spahn CM (2014) "Regulation of the Mammalian Elongation Cycle by Subunit Rolling: A Eukaryotic-Specific Ribosome Rearrangement." Cell(Cambridge,Mass.), 158, 121. doi: 10.1016/J.CELL.2014.04.044. Regulation of the mammalian elongation cycle by 40s subunit rolling: a eukaryotic-specific ribosome rearrangement. SNAP output
4d25 hydrolase X-ray (1.9 Å) Xiol J, Spinelli P, Laussmann MA, Homolka D, Yang Z, Cora E, Coute Y, Conn S, Kadlec J, Sachidanandam R, Kaksonen M, Cusack S, Ephrussi A, Pillai RS (2014) "RNA Clamping by Vasa Assembles a Pirna Amplifier Complex on Transposon Transcripts." Cell(Cambridge,Mass.), 157, 1698. doi: 10.1016/J.CELL.2014.05.018. Crystal structure of the bombyx mori vasa helicase (e339q) in complex with RNA and amppnp. SNAP output
4d26 hydrolase X-ray (2.1 Å) Xiol J, Spinelli P, Laussmann MA, Homolka D, Yang Z, Cora E, Coute Y, Conn S, Kadlec J, Sachidanandam R, Kaksonen M, Cusack S, Ephrussi A, Pillai RS (2014) "RNA Clamping by Vasa Assembles a Pirna Amplifier Complex on Transposon Transcripts." Cell(Cambridge,Mass.), 157, 1698. doi: 10.1016/J.CELL.2014.05.018. Crystal structure of the bombyx mori vasa helicase (e339q) in complex with RNA,adp and pi. SNAP output
4d5l ribosome cryo-EM (9.0 Å) Muhs M, Hilal T, Mielke T, Skabkin MA, Sanbonmatsu KY, Pestova TV, Spahn CMT (2015) "Cryo-Em of Ribosomal 80S Complexes with Termination Factors Reveals the Translocated Cricket Paralysis Virus Ires." Mol.Cell, 57, 422. doi: 10.1016/J.MOLCEL.2014.12.016. cryo-EM structures of ribosomal 80s complexes with termination factors and cricket paralysis virus ires reveal the ires in the translocated state. SNAP output
4d5n ribosome-RNA cryo-EM (9.0 Å) Muhs M, Hilal T, Mielke T, Skabkin MA, Sanbonmatsu KY, Pestova TV, Spahn CMT (2015) "Cryo-Em of Ribosomal 80S Complexes with Termination Factors Reveals the Translocated Cricket Paralysis Virus Ires." Mol.Cell, 57, 422. doi: 10.1016/J.MOLCEL.2014.12.016. cryo-EM structures of ribosomal 80s complexes with termination factors and cricket paralysis virus ires reveal the ires in the translocated state. SNAP output
4d61 ribosome cryo-EM (9.0 Å) Muhs M, Hilal T, Mielke T, Skabkin MA, Sanbonmatsu KY, Pestova TV, Spahn CMT (2015) "Cryo-Em of Ribosomal 80S Complexes with Termination Factors Reveals the Translocated Cricket Paralysis Virus Ires." Mol.Cell, 57, 422. doi: 10.1016/J.MOLCEL.2014.12.016. cryo-EM structures of ribosomal 80s complexes with termination factors and cricket paralysis virus ires reveal the ires in the translocated state. SNAP output
4db2 RNA binding protein-RNA X-ray (3.157 Å) Mallam AL, Del Campo M, Gilman B, Sidote DJ, Lambowitz AM (2012) "Structural basis for RNA-duplex recognition and unwinding by the DEAD-box helicase Mss116p." Nature, 490, 121-125. doi: 10.1038/nature11402. Mss116p dead-box helicase domain 2 bound to an RNA duplex. SNAP output
4dr1 ribosome X-ray (3.6 Å) Demirci H, Murphy F, Murphy E, Gregory ST, Dahlberg AE, Jogl G (2013) "A structural basis for streptomycin-induced misreading of the genetic code." Nat Commun, 4, 1355. doi: 10.1038/ncomms2346. Crystal structure of the apo 30s ribosomal subunit from thermus thermophilus (hb8). SNAP output
4dr2 ribosome-antibiotic X-ray (3.249 Å) Demirci H, Murphy F, Murphy E, Gregory ST, Dahlberg AE, Jogl G (2013) "A structural basis for streptomycin-induced misreading of the genetic code." Nat Commun, 4, 1355. doi: 10.1038/ncomms2346. Crystal structure of the thermus thermophilus (hb8) 30s ribosomal subunit with multiple copies of paromomycin molecules bound. SNAP output
4dr3 ribosome-antibiotic X-ray (3.348 Å) Demirci H, Murphy F, Murphy E, Gregory ST, Dahlberg AE, Jogl G (2013) "A structural basis for streptomycin-induced misreading of the genetic code." Nat Commun, 4, 1355. doi: 10.1038/ncomms2346. Crystal structure of the thermus thermophilus (hb8) 30s ribosomal subunit with streptomycin bound. SNAP output
4dr4 ribosome-antibiotic X-ray (3.969 Å) Demirci H, Murphy F, Murphy E, Gregory ST, Dahlberg AE, Jogl G (2013) "A structural basis for streptomycin-induced misreading of the genetic code." Nat Commun, 4, 1355. doi: 10.1038/ncomms2346. Crystal structure of the thermus thermophilus (hb8) 30s ribosomal subunit with codon, cognate transfer RNA anticodon stem-loop and multiple copies of paromomycin molecules bound. SNAP output
4dr5 ribosome-antibiotic X-ray (3.45 Å) Demirci H, Murphy F, Murphy E, Gregory ST, Dahlberg AE, Jogl G (2013) "A structural basis for streptomycin-induced misreading of the genetic code." Nat Commun, 4, 1355. doi: 10.1038/ncomms2346. Crystal structure of the thermus thermophilus (hb8) 30s ribosomal subunit with codon, crystallographically disordered cognate transfer RNA anticodon stem-loop and streptomycin bound. SNAP output
4dr6 ribosome-antibiotic X-ray (3.3 Å) Demirci H, Murphy F, Murphy E, Gregory ST, Dahlberg AE, Jogl G (2013) "A structural basis for streptomycin-induced misreading of the genetic code." Nat Commun, 4, 1355. doi: 10.1038/ncomms2346. Crystal structure of the thermus thermophilus (hb8) 30s ribosomal subunit with codon, near-cognate transfer RNA anticodon stem-loop mismatched at the first codon position and streptomycin bound. SNAP output
4dr7 ribosome-antibiotic X-ray (3.75 Å) Demirci H, Murphy F, Murphy E, Gregory ST, Dahlberg AE, Jogl G (2013) "A structural basis for streptomycin-induced misreading of the genetic code." Nat Commun, 4, 1355. doi: 10.1038/ncomms2346. Crystal structure of the thermus thermophilus (hb8) 30s ribosomal subunit with codon, crystallographically disordered near-cognate transfer RNA anticodon stem-loop mismatched at the second codon position, and streptomycin bound. SNAP output
4duy ribosome X-ray (3.386 Å) Demirci H, Murphy IV F, Murphy E, Gregory ST, Dahlberg AE, Jogl G "A structural basis for streptomycin resistance." Crystal structure of the thermus thermophilus 30s ribosomal subunit with a 16s rrna mutation, u13c. SNAP output
4duz ribosome-antibiotic X-ray (3.651 Å) Demirci H, Murphy IV F, Murphy E, Gregory ST, Dahlberg AE, Jogl G "A structural basis for streptomycin resistance." Crystal structure of the thermus thermophilus 30s ribosomal subunit with a 16s rrna mutation, u13c, bound with streptomycin. SNAP output
4dv0 ribosome X-ray (3.853 Å) Demirci H, Murphy IV F, Murphy E, Gregory ST, Dahlberg AE, Jogl G "A structural basis for streptomycin resistance." Crystal structure of the thermus thermophilus 30s ribosomal subunit with a 16s rrna mutation, u20g. SNAP output
4dv1 ribosome-antibiotic X-ray (3.849 Å) Demirci H, Murphy IV F, Murphy E, Gregory ST, Dahlberg AE, Jogl G "A structural basis for streptomycin resistance." Crystal structure of the thermus thermophilus 30s ribosomal subunit with a 16s rrna mutation, u20g, bound with streptomycin. SNAP output
4dv2 ribosome X-ray (3.646 Å) Demirci H, Murphy IV F, Murphy E, Gregory ST, Dahlberg AE, Jogl G "A structural basis for streptomycin resistance." Crystal structure of the thermus thermophilus 30s ribosomal subunit with a 16s rrna mutation, c912a. SNAP output
4dv3 ribosome-antibiotic X-ray (3.547 Å) Demirci H, Murphy IV F, Murphy E, Gregory ST, Dahlberg AE, Jogl G "A structural basis for streptomycin resistance." Crystal structure of the thermus thermophilus 30s ribosomal subunit with a 16s rrna mutation, c912a, bound with streptomycin. SNAP output
4dv4 ribosome X-ray (3.651 Å) Demirci H, Murphy IV F, Murphy E, Gregory ST, Dahlberg AE, Jogl G "A structural basis for streptomycin resistance." Crystal structure of the thermus thermophilus 30s ribosomal subunit with a 16s rrna mutation, a914g. SNAP output
4dv5 ribosome-antibiotic X-ray (3.683 Å) Demirci H, Murphy IV F, Murphy E, Gregory ST, Dahlberg AE, Jogl G "A structural basis for streptomycin resistance." Crystal structure of the thermus thermophilus 30s ribosomal subunit with a 16s rrna mutation, a914g, bound with streptomycin. SNAP output
4dv6 ribosome X-ray (3.297 Å) Demirci H, Murphy IV F, Murphy E, Gregory ST, Dahlberg AE, Jogl G "A structural basis for streptomycin resistance." Crystal structure of the thermus thermophilus 30s ribosomal subunit with a 16s rrna mutation, a915g. SNAP output
4dv7 ribosome-antibiotic X-ray (3.294 Å) Demirci H, Murphy IV F, Murphy E, Gregory ST, Dahlberg AE, Jogl G "A structural basis for streptomycin resistance." Crystal structure of the thermus thermophilus 30s ribosomal subunit with a 16s rrna mutation, a915g, bound with streptomycin. SNAP output
4dwa viral protein-RNA X-ray (3.01 Å) Krey T, Bontems F, Vonrhein C, Vaney MC, Bricogne G, Rumenapf T, Rey FA (2012) "Crystal Structure of the Pestivirus Envelope Glycoprotein E(rns) and Mechanistic Analysis of Its Ribonuclease Activity." Structure, 20, 862-873. doi: 10.1016/j.str.2012.03.018. Crystal structure of an active-site mutant of the glycoprotein erns from the pestivirus bvdv-1 in complex with a cpupc trinucleotide. SNAP output
4dzs RNA binding protein-RNA X-ray (3.14 Å) Valley CT, Porter DF, Qiu C, Campbell ZT, Hall TM, Wickens M (2012) "Patterns and plasticity in RNA-protein interactions enable recruitment of multiple proteins through a single site." Proc.Natl.Acad.Sci.USA, 109, 6054-6059. doi: 10.1073/pnas.1200521109. Crystal structure of yeast puf4p RNA binding domain in complex with ho-4be mutant RNA. SNAP output
4e78 viral protein, transferase-RNA X-ray (2.9 Å) Mosley RT, Edwards TE, Murakami E, Lam AM, Grice RL, Du J, Sofia MJ, Furman PA, Otto MJ (2012) "Structure of hepatitis C virus polymerase in complex with primer-template RNA." J.Virol., 86, 6503-6511. doi: 10.1128/JVI.00386-12. Crystal structure of a product state assembly of hcv ns5b genotype 2a jfh-1 isolate with beta hairpin loop deletion bound to primer-template RNA with 3'-dg. SNAP output
4e7a viral protein, transferase-RNA X-ray (3.0 Å) Mosley RT, Edwards TE, Murakami E, Lam AM, Grice RL, Du J, Sofia MJ, Furman PA, Otto MJ (2012) "Structure of hepatitis C virus polymerase in complex with primer-template RNA." J.Virol., 86, 6503-6511. doi: 10.1128/JVI.00386-12. Crystal structure of a product state assembly of hcv ns5b genotype 2a jfh-1 isolate with beta hairpin deletion bound to primer-template RNA with a 2',3'-ddc. SNAP output
4ed5 RNA binding protein-RNA X-ray (2.0 Å) Wang H, Zeng F, Liu Q, Liu H, Liu Z, Niu L, Teng M, Li X (2013) "The structure of the ARE-binding domains of Hu antigen R (HuR) undergoes conformational changes during RNA binding." Acta Crystallogr.,Sect.D, 69, 373-380. doi: 10.1107/S0907444912047828. Crystal structure of the two n-terminal rrm domains of hur complexed with RNA. SNAP output
4ejt transcription regulator-RNA X-ray (3.0 Å) Chang YM, Chen CK-M, Chang YC, Jeng WY, Hou MH, Wang AH-J (2012) "Functional studies of ssDNA binding ability of MarR family protein TcaR from Staphylococcus epidermidis." Plos One, 7, e45665. doi: 10.1371/journal.pone.0045665. Staphylococcus epidermidis tcar in complex with RNA. SNAP output
4erd RNA binding protein-RNA X-ray (2.589 Å) Singh M, Wang Z, Koo BK, Patel A, Cascio D, Collins K, Feigon J (2012) "Structural Basis for Telomerase RNA Recognition and RNP Assembly by the Holoenzyme La Family Protein p65." Mol.Cell, 47, 16-26. doi: 10.1016/j.molcel.2012.05.018. Crystal structure of the c-terminal domain of tetrahymena telomerase protein p65 in complex with stem iv of telomerase RNA. SNAP output
4eya transcription-RNA X-ray (3.2 Å) Stagno JR, Ma B, Li J, Altieri AS, Byrd RA, Ji X (2012) "Crystal structure of a plectonemic RNA supercoil." Nat Commun, 3, 901. doi: 10.1038/ncomms1903. Crystal structure of a plectonemic RNA supercoil. SNAP output
4f02 translation-RNA X-ray (2.0 Å) Safaee N, Kozlov G, Noronha AM, Xie J, Wilds CJ, Gehring K (2012) "Interdomain Allostery Promotes Assembly of the Poly(A) mRNA Complex with PABP and eIF4G." Mol.Cell, 48, 375-386. doi: 10.1016/j.molcel.2012.09.001. Crystal structure of the pabp-binding site of eif4g in complex with rrm1-2 of pabp and poly(a). SNAP output
4f1n RNA binding protein-RNA X-ray (3.187 Å) Nakanishi K, Weinberg DE, Bartel DP, Patel DJ (2012) "Structure of yeast Argonaute with guide RNA." Nature, 486, 368-374. doi: 10.1038/nature11211. Crystal structure of kluyveromyces polysporus argonaute with a guide RNA. SNAP output
4f3t hydrolase-RNA X-ray (2.25 Å) Elkayam E, Kuhn CD, Tocilj A, Haase AD, Greene EM, Hannon GJ, Joshua-Tor L (2012) "The Structure of Human Argonaute-2 in Complex with miR-20a." Cell(Cambridge,Mass.), 150, 100-110. doi: 10.1016/j.cell.2012.05.017. Human argonaute-2 - mir-20a complex. SNAP output
4fsj virus X-ray (3.5 Å) Speir JA, Chen Z, Reddy VS, Johnson JE (2012) "Structural study of virus assembly intermediates reveals maturation event sequence and a staging position for externalized lytic peptides." Crystal structure of the virus like particle of flock house virus. SNAP output
4ftb virus X-ray (2.7 Å) Speir JA, Chen Z, Reddy VS, Johnson JE (2012) "Structural study of virus assembly intermediates reveals maturation event sequence and a staging position for externalized lytic peptides." Crystal structure of the authentic flock house virus particle. SNAP output
4fte virus X-ray (3.5 Å) Speir JA, Chen Z, Reddy VS, Johnson JE (2012) "Structural study of virus assembly intermediates reveals maturation event sequence and a staging position for externalized lytic peptides." Crystal structure of the d75n mutant capsid of flock house virus. SNAP output
4fts virus X-ray (3.2 Å) Speir JA, Chen Z, Reddy VS, Johnson JE (2012) "Structural study of virus assembly intermediates reveals maturation event sequence and a staging position for externalized lytic peptides." Crystal structure of the n363t mutant of the flock house virus capsid. SNAP output
4fvu hydrolase-RNA X-ray (2.91 Å) Hastie KM, King LB, Zandonatti MA, Saphire EO (2012) "Structural Basis for the dsRNA Specificity of the Lassa Virus NP Exonuclease." Plos One, 7, e44211. doi: 10.1371/journal.pone.0044211. Structural basis for the dsrna specificity of the lassa virus np exonuclease. SNAP output
4fwt translation, transferase-RNA X-ray (3.2 Å) Takeshita D, Yamashita S, Tomita K (2012) "Mechanism for template-independent terminal adenylation activity of Q beta replicase." Structure, 20, 1661-1669. doi: 10.1016/j.str.2012.07.004. Complex structure of viral RNA polymerase form iii. SNAP output
4g0a hydrolase-RNA X-ray (2.1 Å) Hu L, Chow DC, Patton JT, Palzkill T, Estes MK, Prasad BV (2012) "Crystallographic Analysis of Rotavirus NSP2-RNA Complex Reveals Specific Recognition of 5' GG Sequence for RTPase Activity." J.Virol., 86, 10547-10557. doi: 10.1128/JVI.01201-12. Crystallographic analysis of rotavirus nsp2-RNA complex reveals specific recognition of 5'-gg sequence for rtpase activity. SNAP output
4g9z viral protein-RNA X-ray (2.03 Å) Jiang X, Huang Q, Wang W, Dong H, Ly H, Liang Y, Dong C (2013) "Structures of Arenaviral Nucleoproteins with Triphosphate dsRNA Reveal a Unique Mechanism of Immune Suppression." J.Biol.Chem., 288, 16949-16959. doi: 10.1074/jbc.M112.420521. Lassa nucleoprotein with dsrna reveals novel mechanism for immune suppression. SNAP output
4gcw hydrolase-RNA X-ray (3.0 Å) Pellegrini O, Li de la Sierra-Gallay I, Piton J, Gilet L, Condon C (2012) "Activation of tRNA Maturation by Downstream Uracil Residues in B. subtilis." Structure, 20, 1769-1777. doi: 10.1016/j.str.2012.08.002. Crystal structure of rnase z in complex with precursor trna(thr). SNAP output
4gha viral protein,RNA binding protein-RNA X-ray (2.5 Å) Bale S, Julien JP, Bornholdt ZA, Kimberlin CR, Halfmann P, Zandonatti MA, Kunert J, Kroon GJ, Kawaoka Y, Macrae IJ, Wilson IA, Saphire EO (2012) "Marburg Virus VP35 Can Both Fully Coat the Backbone and Cap the Ends of dsRNA for Interferon Antagonism." Plos Pathog., 8, e1002916. doi: 10.1371/journal.ppat.1002916. Crystal structure of marburg virus vp35 RNA binding domain bound to 12-bp dsrna. SNAP output
4ghl transcription, viral protein-RNA X-ray (2.02 Å) Ramanan P, Edwards MR, Shabman RS, Leung DW, Endlich-Frazier AC, Borek DM, Otwinowski Z, Liu G, Huh J, Basler CF, Amarasinghe GK (2012) "Structural basis for Marburg virus VP35-mediated immune evasion mechanisms." Proc.Natl.Acad.Sci.USA, 109, 20661-20666. doi: 10.1073/pnas.1213559109. Structural basis for marburg virus vp35 mediate immune evasion mechanisms. SNAP output
4gkj ribosome-antibiotic X-ray (3.298 Å) Cantara WA, Murphy FV, Demirci H, Agris PF (2013) "Expanded use of sense codons is regulated by modified cytidines in tRNA." Proc.Natl.Acad.Sci.USA, 110, 10964-10969. doi: 10.1073/pnas.1222641110. Structure of the thermus thermophilus 30s ribosomal subunit complexed with a human mitochondrial anticodon stem loop (asl) of transfer RNA methionine (trnamet) bound to an mrna with an aug-codon in the a-site and paromomycin.. SNAP output
4gkk ribosome-antibiotic X-ray (3.2 Å) Cantara WA, Murphy FV, Demirci H, Agris PF (2013) "Expanded use of sense codons is regulated by modified cytidines in tRNA." Proc.Natl.Acad.Sci.USA, 110, 10964-10969. doi: 10.1073/pnas.1222641110. Structure of the thermus thermophilus 30s ribosomal subunit complexed with a human mitochondrial anticodon stem loop (asl) of transfer RNA methionine (trnamet) bound to an mrna with an aua-codon in the a-site and paromomycin. SNAP output
4gl2 RNA binding protein-RNA X-ray (3.557 Å) Wu B, Peisley A, Richards C, Yao H, Zeng X, Lin C, Chu F, Walz T, Hur S (2013) "Structural Basis for dsRNA Recognition, Filament Formation, and Antiviral Signal Activation by MDA5." Cell(Cambridge,Mass.), 152, 276-289. doi: 10.1016/j.cell.2012.11.048. Structural basis for dsrna duplex backbone recognition by mda5. SNAP output
4gv3 RNA binding protein-RNA X-ray (1.68 Å) Jiang X, Huang Q, Wang W, Dong H, Ly H, Liang Y, Dong C (2013) "Structures of Arenaviral Nucleoproteins with Triphosphate dsRNA Reveal a Unique Mechanism of Immune Suppression." J.Biol.Chem., 288, 16949-16959. doi: 10.1074/jbc.M112.420521. Structures of lassa and tacaribe viral nucleoproteins with or without 5 triphosphate dsrna substrate reveal a unique 3 -5 exoribonuclease mechanism to suppress type i interferon production. SNAP output
4gv6 RNA binding protein-RNA X-ray (1.98 Å) Jiang X, Huang Q, Wang W, Dong H, Ly H, Liang Y, Dong C (2013) "Structures of Arenaviral Nucleoproteins with Triphosphate dsRNA Reveal a Unique Mechanism of Immune Suppression." J.Biol.Chem., 288, 16949-16959. doi: 10.1074/jbc.M112.420521. Structures of lassa and tacaribe viral nucleoproteins with or without 5 triphosphate dsrna substrate reveal a unique 3 -5 exoribonuclease mechanism to suppress type i interferon production. SNAP output
4gv9 RNA binding protein-RNA X-ray (2.46 Å) Jiang X, Huang Q, Wang W, Dong H, Ly H, Liang Y, Dong C (2013) "Structures of Arenaviral Nucleoproteins with Triphosphate dsRNA Reveal a Unique Mechanism of Immune Suppression." J.Biol.Chem., 288, 16949-16959. doi: 10.1074/jbc.M112.420521. Lassa nucleoprotein c-terminal domain in complex with triphosphated dsrna soaking for 5 min. SNAP output
4h5o viral protein-RNA X-ray (3.9 Å) Raymond DD, Piper ME, Gerrard SR, Skiniotis G, Smith JL (2012) "Phleboviruses encapsidate their genomes by sequestering RNA bases." Proc.Natl.Acad.Sci.USA, 109, 19208-19213. doi: 10.1073/pnas.1213553109. Crystal structure of rift valley fever virus nucleocapsid protein pentamer bound to single-stranded RNA. SNAP output
4h5p viral protein-RNA X-ray (2.15 Å) Raymond DD, Piper ME, Gerrard SR, Skiniotis G, Smith JL (2012) "Phleboviruses encapsidate their genomes by sequestering RNA bases." Proc.Natl.Acad.Sci.USA, 109, 19208-19213. doi: 10.1073/pnas.1213553109. Crystal structure of rift valley fever virus nucleocapsid protein tetramer bound to single-stranded RNA. SNAP output
4hor RNA binding protein-RNA X-ray (1.861 Å) Abbas YM, Pichlmair A, Gorna MW, Superti-Furga G, Nagar B (2013) "Structural basis for viral 5'-PPP-RNA recognition by human IFIT proteins." Nature, 494, 60-64. doi: 10.1038/nature11783. Crystal structure of full-length human ifit5 with 5`-triphosphate oligocytidine. SNAP output
4hos RNA binding protein-RNA X-ray (2.0 Å) Abbas YM, Pichlmair A, Gorna MW, Superti-Furga G, Nagar B (2013) "Structural basis for viral 5'-PPP-RNA recognition by human IFIT proteins." Nature, 494, 60-64. doi: 10.1038/nature11783. Crystal structure of full-length human ifit5 with 5`-triphosphate oligouridine. SNAP output
4hot RNA binding protein-RNA X-ray (2.501 Å) Abbas YM, Pichlmair A, Gorna MW, Superti-Furga G, Nagar B (2013) "Structural basis for viral 5'-PPP-RNA recognition by human IFIT proteins." Nature, 494, 60-64. doi: 10.1038/nature11783. Crystal structure of full-length human ifit5 with 5`-triphosphate oligoadenine. SNAP output
4ht8 RNA binding protein-RNA X-ray (1.9 Å) Wang W, Wang L, Wu J, Gong Q, Shi Y (2013) "Hfq-bridged ternary complex is important for translation activation of rpoS by DsrA." Nucleic Acids Res., 41, 5938-5948. doi: 10.1093/nar/gkt276. Crystal structure of e coli hfq bound to poly(a) a7. SNAP output
4ht9 RNA binding protein-RNA X-ray (1.8 Å) Wang W, Wang L, Wu J, Gong Q, Shi Y (2013) "Hfq-bridged ternary complex is important for translation activation of rpoS by DsrA." Nucleic Acids Res., 41, 5938-5948. doi: 10.1093/nar/gkt276. Crystal structure of e coli hfq bound to two rnas. SNAP output
4i67 hydrolase-RNA X-ray (2.33 Å) Steimer L, Wurm JP, Linden MH, Rudolph MG, Wohnert J, Klostermeier D (2013) "Recognition of two distinct elements in the RNA substrate by the RNA-binding domain of the T. thermophilus DEAD box helicase Hera." Nucleic Acids Res., 41, 6259-6272. doi: 10.1093/nar/gkt323. Crystal structure of the rrm domain of RNA helicase hera from t. thermophilus in complex with gggc RNA. SNAP output
4ifd hydrolase-RNA X-ray (2.805 Å) Makino DL, Baumgartner M, Conti E (2013) "Crystal structure of an RNA-bound 11-subunit eukaryotic exosome complex." Nature, 495, 70-75. doi: 10.1038/nature11870. Crystal structure of an 11-subunit eukaryotic exosome complex bound to RNA. SNAP output
4ig8 transferase-RNA X-ray (2.7 Å) Donovan J, Dufner M, Korennykh A (2013) "Structural basis for cytosolic double-stranded RNA surveillance by human oligoadenylate synthetase 1." Proc.Natl.Acad.Sci.USA, 110, 1652-1657. doi: 10.1073/pnas.1218528110. Structural basis for cytosolic double-stranded RNA surveillance by human oas1. SNAP output
4ii9 transferase-peptide-RNA X-ray (1.66 Å) Fonvielle M, Li de La Sierra-Gallay I, El-Sagheer AH, Lecerf M, Patin D, Mellal D, Mayer C, Blanot D, Gale N, Brown T, van Tilbeurgh H, Etheve-Quelquejeu M, Arthur M (2013) "The Structure of FemXWv in Complex with a Peptidyl-RNA Conjugate: Mechanism of Aminoacyl Transfer from Ala-tRNA(Ala) to Peptidoglycan Precursors." Angew.Chem.Int.Ed.Engl., 52, 7278-7281. doi: 10.1002/anie.201301411. Crystal structure of weissella viridescens femxvv non-ribosomal amino acid transferase in complex with a peptidyl-RNA conjugate. SNAP output
4ijs RNA binding protein-RNA X-ray (3.2 Å) Li BB, Wang Q, Pan X, Fernandez de Castro I, Sun Y, Guo Y, Tao X, Risco C, Sui SF, Lou ZY (2013) "Bunyamwera virus possesses a distinct nucleocapsid protein to facilitate genome encapsidation." Proc.Natl.Acad.Sci.USA, 110, 9048-9053. doi: 10.1073/pnas.1222552110. Crystal structure of nucleocapsid protein encoded by the prototypic member of orthobunyavirus. SNAP output
4ill hydrolase-RNA X-ray (2.484 Å) Shao Y, Li H (2013) "Recognition and cleavage of a nonstructured CRISPR RNA by its processing endoribonuclease Cas6." Structure, 21, 385-393. doi: 10.1016/j.str.2013.01.010. Recognition and cleavage of a non-structured crispr RNA by its processing endoribonuclease cas6. SNAP output
4ilm hydrolase-RNA X-ray (3.068 Å) Shao Y, Li H (2013) "Recognition and cleavage of a nonstructured CRISPR RNA by its processing endoribonuclease Cas6." Structure, 21, 385-393. doi: 10.1016/j.str.2013.01.010. Crispr RNA processing endoribonuclease. SNAP output
4io9 ribosome-ribosome inhibitor X-ray (3.2 Å) Magee TV, Han S, McCurdy SP, Nguyen TT, Granskog K, Marr ES, Maguire BA, Huband MD, Chen JM, Subashi TA, Shanmugasundaram V (2013) "Novel 3-O-carbamoyl erythromycin A derivatives (carbamolides) with activity against resistant staphylococcal and streptococcal isolates." Bioorg.Med.Chem.Lett., 23, 1727-1731. doi: 10.1016/j.bmcl.2013.01.067. Crystal structure of compound 4d bound to large ribosomal subunit (50s) from deinococcus radiodurans. SNAP output
4ioa ribosome-ribosome inhibitor X-ray (3.2 Å) Magee TV, Han S, McCurdy SP, Nguyen TT, Granskog K, Marr ES, Maguire BA, Huband MD, Chen JM, Subashi TA, Shanmugasundaram V (2013) "Novel 3-O-carbamoyl erythromycin A derivatives (carbamolides) with activity against resistant staphylococcal and streptococcal isolates." Bioorg.Med.Chem.Lett., 23, 1727-1731. doi: 10.1016/j.bmcl.2013.01.067. Crystal structure of compound 4e bound to large ribosomal subunit (50s) from deinococcus radiodurans. SNAP output
4ioc ribosome-ribosome inhibitor X-ray (3.6 Å) Magee TV, Han S, McCurdy SP, Nguyen TT, Granskog K, Marr ES, Maguire BA, Huband MD, Chen JM, Subashi TA, Shanmugasundaram V (2013) "Novel 3-O-carbamoyl erythromycin A derivatives (carbamolides) with activity against resistant staphylococcal and streptococcal isolates." Bioorg.Med.Chem.Lett., 23, 1727-1731. doi: 10.1016/j.bmcl.2013.01.067. Crystal structure of compound 4f bound to large ribosomal subunit (50s) from deinococcus radiodurans. SNAP output
4iqx transferase-DNA X-ray (2.5 Å) Agudo R, Ferrer-Orta C, Arias A, de la Higuera I, Perales C, Perez-Luque R, Verdaguer N, Domingo E (2010) "A multi-step process of viral adaptation to a mutagenic nucleoside analogue by modulation of transition types leads to extinction-escape." Plos Pathog., 6, e1001072. doi: 10.1371/journal.ppat.1001072. Mutant p44s p169s m296i of foot-and-mouth disease virus RNA-dependent RNA polymerase. SNAP output
4j1g viral protein-RNA X-ray (2.789 Å) Niu F, Shaw N, Wang YE, Jiao L, Ding W, Li X, Zhu P, Upur H, Ouyang S, Cheng G, Liu ZJ (2013) "Structure of the Leanyer orthobunyavirus nucleoprotein-RNA complex reveals unique architecture for RNA encapsidation." Proc.Natl.Acad.Sci.USA, 110, 9054-9059. doi: 10.1073/pnas.1300035110. Leanyer orthobunyavirus nucleoprotein-ssrna complex. SNAP output
4j39 RNA binding protein-RNA X-ray (1.7 Å) Katorcha E, Tamjar J, Popov AN, Malinina L "Procrustean bed of RNA silencing suppression." Crystal structure of p19 in complex with double-helical 19mer RNA p(cag)3c(cug)3. SNAP output
4j5v RNA binding protein-RNA X-ray (2.15 Å) Tamjar J, Katorcha E, Cabo A, Delgado S, Popov AN, Malinina L "Structural insights into CNG-repetitive RNAs associated with human Trinucleotide Repeat Expansion Diseases (TREDs)." Crystal structure of p19 in complex with double-helical RNA 19mer p(cag)3c(ccg)3. SNAP output
4j7l hydrolase-RNA X-ray (1.8 Å) Jiao X, Chang JH, Kilic T, Tong L, Kiledjian M (2013) "A mammalian pre-mRNA 5' end capping quality control mechanism and an unexpected link of capping to pre-mRNA processing." Mol.Cell, 50, 104-115. doi: 10.1016/j.molcel.2013.02.017. Crystal structure of mouse dxo in complex with product RNA and two magnesium ions. SNAP output
4j7m hydrolase-RNA X-ray (1.7 Å) Jiao X, Chang JH, Kilic T, Tong L, Kiledjian M (2013) "A mammalian pre-mRNA 5' end capping quality control mechanism and an unexpected link of capping to pre-mRNA processing." Mol.Cell, 50, 104-115. doi: 10.1016/j.molcel.2013.02.017. Crystal structure of mouse dxo in complex with substrate mimic RNA and calcium ion. SNAP output
4jgn RNA binding protein-RNA X-ray (1.86 Å) Katorcha E, Tamjar J, Popov AN, Malinina L "Procrustean bed of RNA silencing suppression." Crystal structure of RNA silencing suppressor p19 with 1nt-5'-overhanging double-helical RNA 20mer puug(cug)5cu. SNAP output
4ji0 ribosome X-ray (3.492 Å) Demirci H, Wang L, Murphy FV, Murphy EL, Carr JF, Blanchard SC, Jogl G, Dahlberg AE, Gregory ST (2013) "The central role of protein S12 in organizing the structure of the decoding site of the ribosome." Rna, 19, 1791-1801. doi: 10.1261/rna.040030.113. Crystal structure of 30s ribosomal subunit from thermus thermophilus. SNAP output
4ji1 ribosome-antibiotic X-ray (3.144 Å) Demirci H, Wang L, Murphy FV, Murphy EL, Carr JF, Blanchard SC, Jogl G, Dahlberg AE, Gregory ST (2013) "The central role of protein S12 in organizing the structure of the decoding site of the ribosome." Rna, 19, 1791-1801. doi: 10.1261/rna.040030.113. Crystal structure of 30s ribosomal subunit from thermus thermophilus. SNAP output
4ji2 ribosome X-ray (3.64 Å) Demirci H, Wang L, Murphy FV, Murphy EL, Carr JF, Blanchard SC, Jogl G, Dahlberg AE, Gregory ST (2013) "The central role of protein S12 in organizing the structure of the decoding site of the ribosome." Rna, 19, 1791-1801. doi: 10.1261/rna.040030.113. Crystal structure of 30s ribosomal subunit from thermus thermophilus. SNAP output
4ji3 ribosome X-ray (3.35 Å) Demirci H, Wang L, Murphy FV, Murphy EL, Carr JF, Blanchard SC, Jogl G, Dahlberg AE, Gregory ST (2013) "The central role of protein S12 in organizing the structure of the decoding site of the ribosome." Rna, 19, 1791-1801. doi: 10.1261/rna.040030.113. Crystal structure of 30s ribosomal subunit from thermus thermophilus. SNAP output
4ji4 ribosome-antibiotic X-ray (3.692 Å) Demirci H, Wang L, Murphy FV, Murphy EL, Carr JF, Blanchard SC, Jogl G, Dahlberg AE, Gregory ST (2013) "The central role of protein S12 in organizing the structure of the decoding site of the ribosome." Rna, 19, 1791-1801. doi: 10.1261/rna.040030.113. Crystal structure of 30s ribosomal subunit from thermus thermophilus. SNAP output
4ji5 ribosome-antibiotic X-ray (3.85 Å) Demirci H, Wang L, Murphy FV, Murphy EL, Carr JF, Blanchard SC, Jogl G, Dahlberg AE, Gregory ST (2013) "The central role of protein S12 in organizing the structure of the decoding site of the ribosome." Rna, 19, 1791-1801. doi: 10.1261/rna.040030.113. Crystal structure of 30s ribosomal subunit from thermus thermophilus. SNAP output
4ji6 ribosome X-ray (3.55 Å) Demirci H, Wang L, Murphy FV, Murphy EL, Carr JF, Blanchard SC, Jogl G, Dahlberg AE, Gregory ST (2013) "The central role of protein S12 in organizing the structure of the decoding site of the ribosome." Rna, 19, 1791-1801. doi: 10.1261/rna.040030.113. Crystal structure of 30s ribosomal subunit from thermus thermophilus. SNAP output
4ji7 ribosome X-ray (3.5 Å) Demirci H, Wang L, Murphy FV, Murphy EL, Carr JF, Blanchard SC, Jogl G, Dahlberg AE, Gregory ST (2013) "The central role of protein S12 in organizing the structure of the decoding site of the ribosome." Rna, 19, 1791-1801. doi: 10.1261/rna.040030.113. Crystal structure of 30s ribosomal subunit from thermus thermophilus. SNAP output
4ji8 ribosome-antibiotic X-ray (3.742 Å) Demirci H, Wang L, Murphy FV, Murphy EL, Carr JF, Blanchard SC, Jogl G, Dahlberg AE, Gregory ST (2013) "The central role of protein S12 in organizing the structure of the decoding site of the ribosome." Rna, 19, 1791-1801. doi: 10.1261/rna.040030.113. Crystal structure of 30s ribosomal subunit from thermus thermophilus. SNAP output
4jk0 RNA binding protein-RNA X-ray (2.3 Å) Katorcha E, Tamjar J, Popov AN, Malinina L "Procrustean bed of RNA silencing suppression." Crystal structure of t89q-mutant of RNA silencing suppressor p19 with 2nt-5'-overhanging double-helical RNA 21mer puuug(cug)5cu. SNAP output
4jng viral protein-RNA X-ray (2.12 Å) Dong HH, Li P, Bottcher B, Elliott RM, Dong CJ (2013) "Crystal structure of Schmallenberg orthobunyavirus nucleoprotein-RNA complex reveals a novel RNA sequestration mechanism." Rna, 19, 1129-1136. doi: 10.1261/rna.039057.113. Schmallenberg virus nucleoprotein-RNA complex. SNAP output
4jnx RNA binding protein-RNA X-ray (1.95 Å) Katorcha E, Tamjar J, Popov AN, Malinina L "Procrustean bed of RNA silencing suppression." Crystal structure of RNA silencing suppressor p19 complexed with double-helical RNA 20mer pg(cug)6c. SNAP output
4jv5 ribosome X-ray (3.162 Å) Fernandez IS, Ng CL, Kelley AC, Wu G, Yu YT, Ramakrishnan V (2013) "Unusual base pairing during the decoding of a stop codon by the ribosome." Nature, 500, 107-110. doi: 10.1038/nature12302. Crystal structures of pseudouridinilated stop codons with asls. SNAP output
4jvh RNA binding protein X-ray (3.501 Å) Teplova M, Hafner M, Teplov D, Essig K, Tuschl T, Patel DJ (2013) "Structure-function studies of STAR family Quaking proteins bound to their in vivo RNA target sites." Genes Dev., 27, 928-940. doi: 10.1101/gad.216531.113. Structure of the star domain of quaking protein in complex with RNA. SNAP output
4jvy RNA binding protein X-ray (2.853 Å) Teplova M, Hafner M, Teplov D, Essig K, Tuschl T, Patel DJ (2013) "Structure-function studies of STAR family Quaking proteins bound to their in vivo RNA target sites." Genes Dev., 27, 928-940. doi: 10.1101/gad.216531.113. Structure of the star (signal transduction and activation of RNA) domain of gld-1 bound to RNA. SNAP output
4jxx ligase-RNA X-ray (2.3 Å) Rodriguez-Hernandez A, Spears JL, Gaston KW, Limbach PA, Gamper H, Hou YM, Kaiser R, Agris PF, Perona JJ (2013) "Structural and Mechanistic Basis for Enhanced Translational Efficiency by 2-Thiouridine at the tRNA Anticodon Wobble Position." J.Mol.Biol., 425, 3888-3906. doi: 10.1016/j.jmb.2013.05.018. Crystal structure of e coli e. coli glutaminyl-trna synthetase bound to trna(gln)(cug) and atp from novel cryostabilization conditions. SNAP output
4jxz ligase-RNA X-ray (2.4 Å) Rodriguez-Hernandez A, Spears JL, Gaston KW, Limbach PA, Gamper H, Hou YM, Kaiser R, Agris PF, Perona JJ (2013) "Structural and Mechanistic Basis for Enhanced Translational Efficiency by 2-Thiouridine at the tRNA Anticodon Wobble Position." J.Mol.Biol., 425, 3888-3906. doi: 10.1016/j.jmb.2013.05.018. Structure of e. coli glutaminyl-trna synthetase bound to atp and a trna(gln) acceptor containing a uug anticodon. SNAP output
4jya ribosome X-ray (3.098 Å) Fernandez IS, Ng CL, Kelley AC, Wu G, Yu YT, Ramakrishnan V (2013) "Unusual base pairing during the decoding of a stop codon by the ribosome." Nature, 500, 107-110. doi: 10.1038/nature12302. Crystal structures of pseudouridinilated stop codons with asls. SNAP output
4jyz ligase-RNA X-ray (2.5 Å) Rodriguez-Hernandez A, Spears JL, Gaston KW, Limbach PA, Gamper H, Hou YM, Kaiser R, Agris PF, Perona JJ (2013) "Structural and Mechanistic Basis for Enhanced Translational Efficiency by 2-Thiouridine at the tRNA Anticodon Wobble Position." J.Mol.Biol., 425, 3888-3906. doi: 10.1016/j.jmb.2013.05.018. Crystal structure of e. coli glutaminyl-trna synthetase bound to atp and native trna(gln) containing the cmnm5s2u34 anticodon wobble base. SNAP output
4jzu hydrolase-RNA X-ray (1.7 Å) Piton J, Larue V, Thillier Y, Dorleans A, Pellegrini O, Li de la Sierra-Gallay I, Vasseur JJ, Debart F, Tisne C, Condon C (2013) "Bacillus subtilis RNA deprotection enzyme RppH recognizes guanosine in the second position of its substrates." Proc.Natl.Acad.Sci.USA, 110, 8858-8863. doi: 10.1073/pnas.1221510110. Crystal structure of the bacillus subtilis pyrophosphohydrolase bsrpph bound to a non-hydrolysable triphosphorylated dinucleotide RNA (pcp-pgpg) - first guanosine residue in guanosine binding pocket. SNAP output
4jzv hydrolase-RNA X-ray (2.2 Å) Piton J, Larue V, Thillier Y, Dorleans A, Pellegrini O, Li de la Sierra-Gallay I, Vasseur JJ, Debart F, Tisne C, Condon C (2013) "Bacillus subtilis RNA deprotection enzyme RppH recognizes guanosine in the second position of its substrates." Proc.Natl.Acad.Sci.USA, 110, 8858-8863. doi: 10.1073/pnas.1221510110. Crystal structure of the bacillus subtilis pyrophosphohydrolase bsrpph bound to a non-hydrolysable triphosphorylated dinucleotide RNA (pcp-pgpg) - second guanosine residue in guanosine binding pocket. SNAP output
4k0k ribosome X-ray (3.4 Å) Fernandez IS, Ng CL, Kelley AC, Wu G, Yu YT, Ramakrishnan V (2013) "Unusual base pairing during the decoding of a stop codon by the ribosome." Nature, 500, 107-110. doi: 10.1038/nature12302. Crystal structure of the thermus thermophilus 30s ribosomal subunit complexed with a serine-asl and mrna containing a stop codon. SNAP output
4k4s transferase-RNA X-ray (2.4 Å) Gong P, Kortus MG, Nix JC, Davis RE, Peersen OB (2013) "Structures of coxsackievirus, rhinovirus, and poliovirus polymerase elongation complexes solved by engineering RNA mediated crystal contacts." Plos One, 8, e60272. doi: 10.1371/journal.pone.0060272. Poliovirus polymerase elongation complex (r3_form). SNAP output
4k4t transferase-RNA X-ray (2.75 Å) Gong P, Kortus MG, Nix JC, Davis RE, Peersen OB (2013) "Structures of coxsackievirus, rhinovirus, and poliovirus polymerase elongation complexes solved by engineering RNA mediated crystal contacts." Plos One, 8, e60272. doi: 10.1371/journal.pone.0060272. Poliovirus polymerase elongation complex (r4_form). SNAP output
4k4u transferase-RNA X-ray (2.85 Å) Gong P, Kortus MG, Nix JC, Davis RE, Peersen OB (2013) "Structures of coxsackievirus, rhinovirus, and poliovirus polymerase elongation complexes solved by engineering RNA mediated crystal contacts." Plos One, 8, e60272. doi: 10.1371/journal.pone.0060272. Poliovirus polymerase elongation complex (r5_form). SNAP output
4k4v transferase-RNA X-ray (2.63 Å) Gong P, Kortus MG, Nix JC, Davis RE, Peersen OB (2013) "Structures of coxsackievirus, rhinovirus, and poliovirus polymerase elongation complexes solved by engineering RNA mediated crystal contacts." Plos One, 8, e60272. doi: 10.1371/journal.pone.0060272. Poliovirus polymerase elongation complex (r5+1_form). SNAP output
4k4w transferase-RNA X-ray (2.69 Å) Gong P, Kortus MG, Nix JC, Davis RE, Peersen OB (2013) "Structures of coxsackievirus, rhinovirus, and poliovirus polymerase elongation complexes solved by engineering RNA mediated crystal contacts." Plos One, 8, e60272. doi: 10.1371/journal.pone.0060272. Poliovirus polymerase elongation complex (r5+2_form). SNAP output
4k4x transferase-RNA X-ray (2.37 Å) Gong P, Kortus MG, Nix JC, Davis RE, Peersen OB (2013) "Structures of coxsackievirus, rhinovirus, and poliovirus polymerase elongation complexes solved by engineering RNA mediated crystal contacts." Plos One, 8, e60272. doi: 10.1371/journal.pone.0060272. Coxsackievirus b3 polymerase elongation complex (r2_form), RNA. SNAP output
4k4y transferase-RNA X-ray (2.72 Å) Gong P, Kortus MG, Nix JC, Davis RE, Peersen OB (2013) "Structures of coxsackievirus, rhinovirus, and poliovirus polymerase elongation complexes solved by engineering RNA mediated crystal contacts." Plos One, 8, e60272. doi: 10.1371/journal.pone.0060272. Coxsackievirus b3 polymerase elongation complex (r2+1_form). SNAP output
4k4z transferase-RNA X-ray (2.17 Å) Gong P, Kortus MG, Nix JC, Davis RE, Peersen OB (2013) "Structures of coxsackievirus, rhinovirus, and poliovirus polymerase elongation complexes solved by engineering RNA mediated crystal contacts." Plos One, 8, e60272. doi: 10.1371/journal.pone.0060272. Coxsackievirus b3 polymerase elongation complex (r2_mg_form). SNAP output
4k50 transferase-RNA X-ray (2.93 Å) Gong P, Kortus MG, Nix JC, Davis RE, Peersen OB (2013) "Structures of coxsackievirus, rhinovirus, and poliovirus polymerase elongation complexes solved by engineering RNA mediated crystal contacts." Plos One, 8, e60272. doi: 10.1371/journal.pone.0060272. Rhinovirus 16 polymerase elongation complex (r1_form). SNAP output
4khp ribosome-antibiotic X-ray (3.1 Å) Tourigny DS, Fernandez IS, Kelley AC, Vakiti RR, Chattopadhyay AK, Dorich S, Hanessian S, Ramakrishnan V (2013) "Crystal Structure of a Bioactive Pactamycin Analog Bound to the 30S Ribosomal Subunit." J.Mol.Biol., 425, 3907-3910. doi: 10.1016/j.jmb.2013.05.004. Structure of the thermus thermophilus 30s ribosomal subunit in complex with de-6-msa-pactamycin. SNAP output
4kji RNA binding protein-RNA X-ray (3.2 Å) Morris ER, Hall G, Li C, Heeb S, Kulkarni RV, Lovelock L, Silistre H, Messina M, Camara M, Emsley J, Williams P, Searle MS (2013) "Structural Rearrangement in an RsmA/CsrA Ortholog of Pseudomonas aeruginosa Creates a Dimeric RNA-Binding Protein, RsmN." Structure, 21, 1659-1671. doi: 10.1016/j.str.2013.07.007. Novel re-arrangement of an rsma-csra family protein to create a structurally distinct new RNA-binding family member. SNAP output
4knq RNA binding protein-RNA X-ray (1.82 Å) Tamjar J, Katorcha E, Cabo A, Delgado S, Popov AN, Malinina L "Structural insights into CNG-repetitive RNAs associated with human Trinucleotide Repeat Expansion Diseases (TREDs)." Crystal structure of 1nt-5'-overhanging double-helical ccg-repetitive RNA 20mer complexed with rss p19. SNAP output
4kq0 RNA binding protein-RNA X-ray (2.1 Å) Tamjar J, Katorcha E, Cabo A, Delgado S, Popov AN, Malinina L "Structural insights into CNG-repetitive RNAs associated with human Trinucleotide Repeat Expansion Diseases (TREDs)." Crystal structure of double-helical cgg-repetitive RNA 19mer complexed with rss p19. SNAP output
4kr2 ligase-RNA X-ray (3.292 Å) Qin X, Hao Z, Tian Q, Zhang Z, Zhou C, Xie W (2014) "Cocrystal Structures of Glycyl-tRNA Synthetase in Complex with tRNA Suggest Multiple Conformational States in Glycylation." J.Biol.Chem., 289, 20359-20369. doi: 10.1074/jbc.M114.557249. Glycyl-trna synthetase in complex with trna-gly. SNAP output
4kr3 ligase-RNA X-ray (3.235 Å) Qin X, Hao Z, Tian Q, Zhang Z, Zhou C, Xie W (2014) "Cocrystal Structures of Glycyl-tRNA Synthetase in Complex with tRNA Suggest Multiple Conformational States in Glycylation." J.Biol.Chem., 289, 20359-20369. doi: 10.1074/jbc.M114.557249. Glycyl-trna synthetase mutant e71g in complex with trna-gly. SNAP output
4kr6 transferase-RNA X-ray (2.85 Å) Neumann P, Lakomek K, Naumann PT, Erwin WM, Lauhon CT, Ficner R (2014) "Crystal structure of a 4-thiouridine synthetase-RNA complex reveals specificity of tRNA U8 modification." Nucleic Acids Res., 42, 6673-6685. doi: 10.1093/nar/gku249. Crystal structure of a 4-thiouridine synthetase - RNA complex. SNAP output
4kr7 transferase-RNA X-ray (3.421 Å) Neumann P, Lakomek K, Naumann PT, Erwin WM, Lauhon CT, Ficner R (2014) "Crystal structure of a 4-thiouridine synthetase-RNA complex reveals specificity of tRNA U8 modification." Nucleic Acids Res., 42, 6673-6685. doi: 10.1093/nar/gku249. Crystal structure of a 4-thiouridine synthetase - RNA complex with bound atp. SNAP output
4kr9 transferase-RNA X-ray (3.5 Å) Neumann P, Lakomek K, Naumann PT, Erwin WM, Lauhon CT, Ficner R (2014) "Crystal structure of a 4-thiouridine synthetase-RNA complex reveals specificity of tRNA U8 modification." Nucleic Acids Res., 42, 6673-6685. doi: 10.1093/nar/gku249. Crystal structure of a 4-thiouridine synthetase - RNA complex at 3.5 angstrom resolution. SNAP output
4kre transcription-RNA X-ray (1.754 Å) Faehnle CR, Elkayam E, Haase AD, Hannon GJ, Joshua-Tor L (2013) "The making of a slicer: activation of human argonaute-1." Cell Rep, 3, 1901-1909. doi: 10.1016/j.celrep.2013.05.033. Structure of human argonaute-1 bound to endogenous sf9 RNA. SNAP output
4krf transcription-RNA X-ray (2.101 Å) Faehnle CR, Elkayam E, Haase AD, Hannon GJ, Joshua-Tor L (2013) "The making of a slicer: activation of human argonaute-1." Cell Rep, 3, 1901-1909. doi: 10.1016/j.celrep.2013.05.033. Structure of human argonaute-1 let-7 complex. SNAP output
4ktg RNA binding protein-RNA X-ray (1.92 Å) Tamjar J, Katorcha E, Cabo A, Delgado S, Popov AN, Malinina L "Structural insights into CNG-repetitive RNAs associated with human Trinucleotide Repeat Expansion Diseases (TREDs)." Crystal structure of double-helical ggc-repetitive RNA 19mer complexed with rss p19. SNAP output
4kvb ribosome X-ray (4.198 Å) Connetti JL, Murphy EL, Dahlberg AE, Gregory ST, Jogl G "Structural robustness of the ribosome inferred from the X-ray crystal structure of a 30S ribosomal subunit lacking ribosomal protein S17." Thermus thermophilus hb27 30s ribosomal subunit lacking ribosomal protein s17. SNAP output
4kxt hydrolase-RNA X-ray (2.294 Å) Nakanishi K, Ascano M, Gogakos T, Ishibe-Murakami S, Serganov AA, Briskin D, Morozov P, Tuschl T, Patel DJ (2013) "Eukaryote-Specific Insertion Elements Control Human ARGONAUTE Slicer Activity." Cell Rep, 3, 1893-1900. doi: 10.1016/j.celrep.2013.06.010. Structure of human argonaute1 in complex with guide RNA. SNAP output
4kzd immune system-RNA X-ray (2.186 Å) Huang H, Suslov NB, Li NS, Shelke SA, Evans ME, Koldobskaya Y, Rice PA, Piccirilli JA (2014) "A G-quadruplex-containing RNA activates fluorescence in a GFP-like fluorophore." Nat.Chem.Biol., 10, 686-691. doi: 10.1038/nchembio.1561. Crystal structure of an RNA aptamer in complex with fluorophore and fab. SNAP output
4kze immune system-RNA X-ray (2.404 Å) Huang H, Suslov NB, Li NS, Shelke SA, Evans ME, Koldobskaya Y, Rice PA, Piccirilli JA (2014) "A G-quadruplex-containing RNA activates fluorescence in a GFP-like fluorophore." Nat.Chem.Biol., 10, 686-691. doi: 10.1038/nchembio.1561. Crystal structure of an RNA aptamer in complex with fab. SNAP output
4l8h structural protein X-ray (2.4 Å) Rumnieks J, Tars K (2014) "Crystal structure of the bacteriophage q beta coat protein in complex with the RNA operator of the replicase gene." J.Mol.Biol., 426, 1039-1049. doi: 10.1016/j.jmb.2013.08.025. Bacteriophage qbeta coat protein in complex with RNA operator hairpin. SNAP output
4l8r RNA-RNA binding protein-hydrolase X-ray (2.6 Å) Tan D, Marzluff WF, Dominski Z, Tong L (2013) "Structure of Histone Mrna Stem-Loop, Human Stem-Loop Binding Protein, and 3'Hexo Ternary Complex." Science, 339, 318. doi: 10.1126/SCIENCE.1228705. Structure of mrna stem-loop, human stem-loop binding protein and 3'hexo ternary complex. SNAP output
4lck ribosomal protein-RNA X-ray (3.2 Å) Zhang J, Ferre-D'Amare AR (2013) "Co-crystal structure of a T-box riboswitch stem I domain in complex with its cognate tRNA." Nature, 500, 363-366. doi: 10.1038/nature12440. Co-crystal structure of a t-box riboswitch stem i domain in complex with its cognate trna. SNAP output
4lf4 ribosome X-ray (3.34 Å) Demirci H, Belardinelli R, Carr J, Murphy IV F, Jogl G, Dahlberg AE, Gregory ST (2013) "Crystal Structure of 30S ribosomal subunit from Thermus thermophilus." Crystal structure of 30s ribosomal subunit from thermus thermophilus. SNAP output
4lf5 ribosome X-ray (3.753 Å) Demirci H, Belardinelli R, Carr J, Murphy IV F, Jogl G, Dahlberg AE, Gregory ST (2013) "Crystal Structure of 30S ribosomal subunit from Thermus thermophilus." Crystal structure of 30s ribosomal subunit from thermus thermophilus. SNAP output
4lf6 ribosome X-ray (3.31 Å) Demirci H, Belardinelli R, Carr J, Murphy IV F, Jogl G, Dahlberg AE, Gregory ST (2013) "Crystal Structure of 30S ribosomal subunit from Thermus thermophilus." Crystal structure of 30s ribosomal subunit from thermus thermophilus. SNAP output
4lf7 ribosome X-ray (3.15 Å) Demirci H, Belardinelli R, Carr J, Murphy IV F, Jogl G, Dahlberg AE, Gregory ST (2013) "Crystal Structure of 30S ribosomal subunit from Thermus thermophilus." Crystal structure of 30s ribosomal subunit from thermus thermophilus. SNAP output
4lf8 ribosome X-ray (3.15 Å) Demirci H, Belardinelli R, Carr J, Murphy IV F, Jogl G, Dahlberg AE, Gregory ST (2013) "Crystal Structure of 30S ribosomal subunit from Thermus thermophilus." Crystal structure of 30s ribosomal subunit from thermus thermophilus. SNAP output
4lf9 ribosome X-ray (3.28 Å) Demirci H, Belardinelli R, Carr J, Murphy IV F, Jogl G, Dahlberg AE, Gregory ST (2013) "Crystal Structure of 30S ribosomal subunit from Thermus thermophilus." Crystal structure of 30s ribosomal subunit from thermus thermophilus. SNAP output
4lfa ribosome X-ray (3.65 Å) Demirci H, Belardinelli R, Carr J, Murphy IV F, Jogl G, Dahlberg AE, Gregory ST (2013) "Crystal Structure of 30S ribosomal subunit from Thermus thermophilus." Crystal structure of 30s ribosomal subunit from thermus thermophilus. SNAP output
4lfb ribosome X-ray (3.009 Å) Demirci H, Belardinelli R, Carr J, Murphy IV F, Jogl G, Dahlberg AE, Gregory ST (2013) "Crystal Structure of 30S ribosomal subunit from Thermus thermophilus." Crystal structure of 30s ribosomal subunit from thermus thermophilus. SNAP output
4lfc ribosome X-ray (3.602 Å) Demirci H, Belardinelli R, Carr J, Murphy IV F, Jogl G, Dahlberg AE, Gregory ST (2013)   Crystal structure of 30s ribosomal subunit from thermus thermophilus. SNAP output
4lg2 RNA binding protein-RNA X-ray (2.7 Å) Bale S, Julien JP, Bornholdt ZA, Krois AS, Wilson IA, Saphire EO (2013) "Ebolavirus VP35 coats the backbone of double-stranded RNA for interferon antagonism." J.Virol., 87, 10385-10388. doi: 10.1128/JVI.01452-13. Crystal structure of reston ebola virus vp35 RNA binding domain bound to 12-bp dsrna. SNAP output
4lgt isomerase-RNA X-ray (1.3 Å) Czudnochowski N, Ashley GW, Santi DV, Alian A, Finer-Moore J, Stroud RM (2014) "The mechanism of pseudouridine synthases from a covalent complex with RNA, and alternate specificity for U2605 versus U2604 between close homologs." Nucleic Acids Res., 42, 2037-2048. doi: 10.1093/nar/gkt1050. Crystal structure of the catalytic domain of rlub in complex with a 21-nucleotide RNA substrate. SNAP output
4lj0 RNA binding protein X-ray (2.15 Å) Kuhlmann SI, Valkov E, Stewart M (2014) "Structural basis for the molecular recognition of polyadenosine RNA by Nab2 Zn fingers." Nucleic Acids Res., 42, 672-680. doi: 10.1093/nar/gkt876. Nab2 zn fingers complexed with polyadenosine. SNAP output
4lmz RNA binding protein X-ray (2.78 Å) Bhatt H, Manickam Y, Bhavesh NS "sequence specific RNA recognition of ETR3 RRM 1-2 domains." Structural insight into RNA recognition by rrm1+2 domain of human etr-3 protein. SNAP output
4lq3 viral protein-replication inhibitor-RNA X-ray (2.6 Å) Tarantino D, Pezzullo M, Mastrangelo E, Croci R, Rohayem J, Robel I, Bolognesi M, Milani M (2014) "Naphthalene-sulfonate inhibitors of human norovirus RNA-dependent RNA-polymerase." Antiviral Res., 102, 23-28. doi: 10.1016/j.antiviral.2013.11.016. Crystal structure of human norovirus RNA-dependent RNA-polymerase bound to the inhibitor ppnds. SNAP output
4m2z hydrolase-RNA X-ray (2.85 Å) Court DL, Gan J, Liang YH, Shaw GX, Tropea JE, Costantino N, Waugh DS, Ji X (2013) "RNase III: Genetics and Function; Structure and Mechanism." Annu. Rev. Genet., 47, 405-431. doi: 10.1146/annurev-genet-110711-155618. Crystal structure of rnase iii complexed with double-stranded RNA and cmp (type ii cleavage). SNAP output
4m30 hydrolase-RNA X-ray (2.501 Å) Court DL, Gan J, Liang YH, Shaw GX, Tropea JE, Costantino N, Waugh DS, Ji X (2013) "RNase III: Genetics and Function; Structure and Mechanism." Annu. Rev. Genet., 47, 405-431. doi: 10.1146/annurev-genet-110711-155618. Crystal structure of rnase iii complexed with double-stranded RNA and amp (type ii cleavage). SNAP output
4m4o hydrolase-RNA X-ray (2.0 Å) Malashkevich VN, Padlan FC, Toro R, Girvin M, Almo SC "Crystal structure of the aptamer minE-lysozyme complex." Crystal structure of the aptamer mine-lysozyme complex. SNAP output
4m59 RNA binding protein-RNA X-ray (2.46 Å) Yin P, Li Q, Yan C, Liu Y, Liu J, Yu F, Wang Z, Long J, He J, Wang HW, Wang J, Zhu JK, Shi Y, Yan N (2013) "Structural basis for the modular recognition of single-stranded RNA by PPR proteins." Nature, 504, 168-171. doi: 10.1038/nature12651. Crystal structure of the pentatricopeptide repeat protein ppr10 in complex with an 18-nt psaj RNA element. SNAP output
4m6d hydrolase-RNA X-ray (2.68 Å) Malashkevich VN, Padlan FC, Toro R, Girvin M, Almo SC "Crystal structure of the aptamer minF-lysozyme complex." Crystal structure of the aptamer minf-lysozyme complex.. SNAP output
4m7a RNA binding protein X-ray (2.781 Å) Zhou L, Hang J, Zhou Y, Wan R, Lu G, Yin P, Yan C, Shi Y (2014) "Crystal structures of the Lsm complex bound to the 3' end sequence of U6 small nuclear RNA." Nature, 506, 116-120. doi: 10.1038/nature12803. Crystal structure of lsm2-8 complex bound to the 3' end sequence of u6 snrna. SNAP output
4m7d RNA binding protein X-ray (2.595 Å) Zhou L, Hang J, Zhou Y, Wan R, Lu G, Yin P, Yan C, Shi Y (2014) "Crystal structures of the Lsm complex bound to the 3' end sequence of U6 small nuclear RNA." Nature, 506, 116-120. doi: 10.1038/nature12803. Crystal structure of lsm2-8 complex bound to the RNA fragment cguuu. SNAP output
4mdx hydrolase-RNA X-ray (1.5 Å) Simanshu DK, Yamaguchi Y, Park JH, Inouye M, Patel DJ (2013) "Structural Basis of mRNA Recognition and Cleavage by Toxin MazF and Its Regulation by Antitoxin MazE in Bacillus subtilis." Mol.Cell, 52, 447-458. doi: 10.1016/j.molcel.2013.09.006. Crystal structure of bacillus subtilis mazf in complex with RNA. SNAP output
4n0t RNA binding protein-RNA X-ray (1.7 Å) Montemayor EJ, Curran EC, Liao HH, Andrews KL, Treba CN, Butcher SE, Brow DA (2014) "Core structure of the U6 small nuclear ribonucleoprotein at 1.7- angstrom resolution." Nat.Struct.Mol.Biol., 21, 544-551. doi: 10.1038/nsmb.2832. Core structure of the u6 small nuclear ribonucleoprotein at 1.7 angstrom resolution. SNAP output
4n2q splicing-RNA X-ray (2.8 Å) Ke J, Chen RZ, Ban T, Zhou XE, Gu X, Tan MH, Chen C, Kang Y, Brunzelle JS, Zhu JK, Melcher K, Xu HE (2013) "Structural basis for RNA recognition by a dimeric PPR-protein complex." Nat.Struct.Mol.Biol., 20, 1377-1382. doi: 10.1038/nsmb.2710. Crystal structure of tha8 in complex with zm4 RNA. SNAP output
4n2s splicing-RNA X-ray (3.0 Å) Ke J, Chen RZ, Ban T, Zhou XE, Gu X, Tan MH, Chen C, Kang Y, Brunzelle JS, Zhu JK, Melcher K, Xu HE (2013) "Structural basis for RNA recognition by a dimeric PPR-protein complex." Nat.Struct.Mol.Biol., 20, 1377-1382. doi: 10.1038/nsmb.2710. Crystal structure of tha8 in complex with zm1a-6 RNA. SNAP output
4n48 transferase-RNA X-ray (2.704 Å) Smietanski M, Werner M, Purta E, Kaminska KH, Stepinski J, Darzynkiewicz E, Nowotny M, Bujnicki JM (2014) "Structural analysis of human 2'-O-ribose methyltransferases involved in mRNA cap structure formation." Nat Commun, 5, 3004. doi: 10.1038/ncomms4004. Cap-specific mrna (nucleoside-2'-o-)-methyltransferase 1 protein in complex with capped RNA fragment. SNAP output
4ngb hydrolase-RNA X-ray (2.25 Å) Tian Y, Simanshu DK, Ma JB, Park JE, Heo I, Kim VN, Patel DJ (2014) "A Phosphate-Binding Pocket within the Platform-PAZ-Connector Helix Cassette of Human Dicer." Mol.Cell, 53, 606-616. doi: 10.1016/j.molcel.2014.01.003. Structure of human dicer platform-paz-connector helix cassette in complex with 12-mer sirna having uu-3' ends (2.25 angstrom resolution). SNAP output
4ngc hydrolase-RNA X-ray (2.104 Å) Tian Y, Simanshu DK, Ma JB, Park JE, Heo I, Kim VN, Patel DJ (2014) "A Phosphate-Binding Pocket within the Platform-PAZ-Connector Helix Cassette of Human Dicer." Mol.Cell, 53, 606-616. doi: 10.1016/j.molcel.2014.01.003. Structure of human dicer platform-paz-connector helix cassette in complex with 12-mer sirna having ua-3' ends (2.1 angstrom resolution). SNAP output
4ngd hydrolase-RNA X-ray (1.958 Å) Tian Y, Simanshu DK, Ma JB, Park JE, Heo I, Kim VN, Patel DJ (2014) "A Phosphate-Binding Pocket within the Platform-PAZ-Connector Helix Cassette of Human Dicer." Mol.Cell, 53, 606-616. doi: 10.1016/j.molcel.2014.01.003. Structure of human dicer platform-paz-connector helix cassette in complex with 12-mer sirna having 5'-p and uu-3' ends (1.95 angstrom resolution). SNAP output
4ngf hydrolase-RNA X-ray (3.101 Å) Tian Y, Simanshu DK, Ma JB, Park JE, Heo I, Kim VN, Patel DJ (2014) "A Phosphate-Binding Pocket within the Platform-PAZ-Connector Helix Cassette of Human Dicer." Mol.Cell, 53, 606-616. doi: 10.1016/j.molcel.2014.01.003. Structure of human dicer platform-paz-connector helix cassette in complex with 17-mer sirna having 5'-p and uu-3' ends (3.1 angstrom resolution). SNAP output
4ngg hydrolase-RNA X-ray (2.6 Å) Tian Y, Simanshu DK, Ma JB, Park JE, Heo I, Kim VN, Patel DJ (2014) "A Phosphate-Binding Pocket within the Platform-PAZ-Connector Helix Cassette of Human Dicer." Mol.Cell, 53, 606-616. doi: 10.1016/j.molcel.2014.01.003. Structure of human dicer platform-paz-connector helix cassette in complex with 13-mer sirna having 5'-a and uu-3' ends (2.6 angstrom resolution). SNAP output
4nh3 hydrolase-RNA X-ray (2.616 Å) Tian Y, Simanshu DK, Ma JB, Park JE, Heo I, Kim VN, Patel DJ (2014) "A Phosphate-Binding Pocket within the Platform-PAZ-Connector Helix Cassette of Human Dicer." Mol.Cell, 53, 606-616. doi: 10.1016/j.molcel.2014.01.003. Structure of human dicer platform-paz-connector helix cassette in complex with 13-mer sirna having 5'-pu and uu-3' ends (2.6 angstrom resolution). SNAP output
4nh5 hydrolase-RNA X-ray (2.55 Å) Tian Y, Simanshu DK, Ma JB, Park JE, Heo I, Kim VN, Patel DJ (2014) "A Phosphate-Binding Pocket within the Platform-PAZ-Connector Helix Cassette of Human Dicer." Mol.Cell, 53, 606-616. doi: 10.1016/j.molcel.2014.01.003. Structure of human dicer platform-paz-connector helix cassette in complex with 14-mer sirna having 5'-puu and uu-3' ends (2.55 angstrom resolution). SNAP output
4nh6 hydrolase-RNA X-ray (2.551 Å) Tian Y, Simanshu DK, Ma JB, Park JE, Heo I, Kim VN, Patel DJ (2014) "A Phosphate-Binding Pocket within the Platform-PAZ-Connector Helix Cassette of Human Dicer." Mol.Cell, 53, 606-616. doi: 10.1016/j.molcel.2014.01.003. Structure of human dicer platform-paz-connector helix cassette in complex with 15-mer sirna having 5'-puuu and uu-3' ends (2.55 angstrom resolution). SNAP output
4nha hydrolase-RNA X-ray (3.401 Å) Tian Y, Simanshu DK, Ma JB, Park JE, Heo I, Kim VN, Patel DJ (2014) "A Phosphate-Binding Pocket within the Platform-PAZ-Connector Helix Cassette of Human Dicer." Mol.Cell, 53, 606-616. doi: 10.1016/j.molcel.2014.01.003. Structure of human dicer platform-paz-connector helix cassette in complex with 16-mer sirna having 5'-p and uu-3' ends (3.4 angstrom resolution). SNAP output
4nia virus-RNA X-ray (1.82 Å) Larson SB, Day JS, McPherson A (2014) "Satellite tobacco mosaic virus refined to 1.4 angstrom resolution." Acta Crystallogr.,Sect.D, 70, 2316-2330. doi: 10.1107/S1399004714013789. Satellite tobacco mosaic virus refined at room temperature to 1.8 Å resolution using ncs restraints. SNAP output
4nku transferase-RNA X-ray (1.94 Å) Munoz-Tello P, Gabus C, Thore S (2014) "A critical switch in the enzymatic properties of the Cid1 protein deciphered from its product-bound crystal structure." Nucleic Acids Res., 42, 3372-3380. doi: 10.1093/nar/gkt1278. Structure of cid1 in complex with its short product apu. SNAP output
4nl3 RNA binding protein-RNA X-ray (3.1 Å) Kovach AR, Hoff KE, Canty JT, Orans J, Brennan RG (2014) "Recognition of U-rich RNA by Hfq from the Gram-positive pathogen Listeria monocytogenes." Rna, 20, 1548-1559. doi: 10.1261/rna.044032.113. Crystal structure of listeria monocytogenes hfq in complex with u6 RNA. SNAP output
4nxm ribosome X-ray (3.65 Å) Demirci H, Murphy IV F, Murphy E, Gregory ST, Dahlberg AE, Jogl G "A structural basis for streptomycin resistance." Crystal structure of the 30s ribosomal subunit from a gidb (rsmg) mutant of thermus thermophilus (hb8). SNAP output
4nxn ribosome-antibiotic X-ray (3.544 Å) Demirci H, Murphy IV F, Murphy E, Gregory ST, Dahlberg AE, Jogl G "A structural basis for streptomycin resistance." Crystal structure of the 30s ribosomal subunit from a gidb (rsmg) mutant of thermus thermophilus (hb8), bound with streptomycin. SNAP output
4o26 RNA binding protein-RNA X-ray (3.001 Å) Huang J, Brown AF, Wu J, Xue J, Bley CJ, Rand DP, Wu L, Zhang R, Chen JJ, Lei M (2014) "Structural basis for protein-RNA recognition in telomerase." Nat.Struct.Mol.Biol., 21, 507-512. doi: 10.1038/nsmb.2819. Crystal structure of the trbd domain of tert and the cr4-5 of tr. SNAP output
4o8j ligase-RNA X-ray (2.04 Å) Desai KK, Bingman CA, Cheng CL, Phillips Jr GN, Raines RT (2014) "Structure of RNA 3'-phosphate cyclase bound to substrate RNA." Rna, 20, 1560-1566. doi: 10.1261/rna.045823.114. Crystal structure of rtca, the RNA 3'-terminal phosphate cyclase from pyrococcus horikoshii, in complex with racaaa3'phosphate and adenine.. SNAP output
4oau hydrolase-RNA X-ray (2.6 Å) Han Y, Donovan J, Rath S, Whitney G, Chitrakar A, Korennykh A (2014) "Structure of human RNase L reveals the basis for regulated RNA decay in the IFN response." Science, 343, 1244-1248. doi: 10.1126/science.1249845. Complete human rnase l in complex with biological activators.. SNAP output
4oav hydrolase-RNA X-ray (2.1 Å) Han Y, Donovan J, Rath S, Whitney G, Chitrakar A, Korennykh A (2014) "Structure of human RNase L reveals the basis for regulated RNA decay in the IFN response." Science, 343, 1244-1248. doi: 10.1126/science.1249845. Complete human rnase l in complex with 2-5a (5'-ppp heptamer), amppcp and RNA substrate.. SNAP output
4oe1 RNA binding protein-RNA X-ray (2.8 Å) Li Q, Yan C, Xu H, Wang Z, Long J, Li W, Wu J, Yin P, Yan N (2014) "Examination of the dimerization states of the single-stranded RNA recognition protein pentatricopeptide repeat 10 (PPR10)." J.Biol.Chem., 289, 31503-31512. doi: 10.1074/jbc.M114.575472. Crystal structure of the pentatricopeptide repeat protein ppr10 (c256s-c430s-c449s) in complex with an 18-nt psaj RNA element. SNAP output
4ohy RNA binding protein-RNA X-ray (2.0 Å) Dikfidan A, Loll B, Zeymer C, Magler I, Clausen T, Meinhart A (2014) "RNA specificity and regulation of catalysis in the eukaryotic polynucleotide kinase clp1." Mol.Cell, 54, 975-986. doi: 10.1016/j.molcel.2014.04.005. C. elegans clp1 bound to ssrna dinucleotide gc, amp-pnp, and mg2+(inhibited substrate bound state). SNAP output
4ohz RNA binding protein-RNA X-ray (2.4 Å) Dikfidan A, Loll B, Zeymer C, Magler I, Clausen T, Meinhart A (2014) "RNA specificity and regulation of catalysis in the eukaryotic polynucleotide kinase clp1." Mol.Cell, 54, 975-986. doi: 10.1016/j.molcel.2014.04.005. Bound to ssrna tetranucleotide gaaa, adp, and mg2+. SNAP output
4oi0 RNA binding protein-RNA X-ray (2.2 Å) Dikfidan A, Loll B, Zeymer C, Magler I, Clausen T, Meinhart A (2014) "RNA specificity and regulation of catalysis in the eukaryotic polynucleotide kinase clp1." Mol.Cell, 54, 975-986. doi: 10.1016/j.molcel.2014.04.005. Bound to ssrna dinucleotide gc, adp, alf4-, and mg2+(transition state, data set i). SNAP output
4oi1 RNA binding protein-RNA X-ray (2.3 Å) Dikfidan A, Loll B, Zeymer C, Magler I, Clausen T, Meinhart A (2014) "RNA specificity and regulation of catalysis in the eukaryotic polynucleotide kinase clp1." Mol.Cell, 54, 975-986. doi: 10.1016/j.molcel.2014.04.005. Clp1 bound to ssrna dinucleotide gc, adp, alf4-, and mg2+(transition state, data set ii). SNAP output
4ola hydrolase-RNA X-ray (2.3 Å) Schirle NT, MacRae IJ (2012) "The crystal structure of human Argonaute2." Science, 336, 1037-1040. doi: 10.1126/science.1221551. Crystal structure of human argonaute2. SNAP output
4olb hydrolase-RNA X-ray (2.899 Å) Schirle NT, MacRae IJ (2012) "The crystal structure of human Argonaute2." Science, 336, 1037-1040. doi: 10.1126/science.1221551. Crystal structure of human argonaute2 bound to tryptophan. SNAP output
4oo1 hydrolase-RNA X-ray (3.3 Å) Wasmuth EV, Januszyk K, Lima CD (2014) "Structure of an Rrp6-RNA exosome complex bound to poly(A) RNA." Nature, 511, 435-439. doi: 10.1038/nature13406. Structure of an rrp6-RNA exosome complex bound to poly(a) RNA. SNAP output
4oog hydrolase-RNA X-ray (2.5 Å) Liang YH, Lavoie M, Comeau MA, Abou Elela S, Ji X (2014) "Structure of a Eukaryotic RNase III Postcleavage Complex Reveals a Double-Ruler Mechanism for Substrate Selection." Mol.Cell, 54, 431-444. doi: 10.1016/j.molcel.2014.03.006. Crystal structure of yeast rnase iii (rnt1p) complexed with the product of dsrna processing. SNAP output
4oq8 virus-RNA X-ray (1.45 Å) Larson SB, Day JS, McPherson A (2014) "Satellite tobacco mosaic virus refined to 1.4 angstrom resolution." Acta Crystallogr.,Sect.D, 70, 2316-2330. doi: 10.1107/S1399004714013789. Satellite tobacco mosaic virus refined to 1.4 Å resolution using icosahedral constraints. SNAP output
4oq9 virus-RNA X-ray (1.45 Å) Larson SB, Day JS, McPherson A (2014) "Satellite tobacco mosaic virus refined to 1.4 angstrom resolution." Acta Crystallogr.,Sect.D, 70, 2316-2330. doi: 10.1107/S1399004714013789. Satellite tobacco mosaic virus refined to 1.4 Å resolution using non-crystallographic symmetry restraints. SNAP output
4ox9 ribosome-antibiotic X-ray (3.8 Å) Dunkle JA, Vinal K, Desai PM, Zelinskaya N, Savic M, West DM, Conn GL, Dunham CM (2014) "Molecular recognition and modification of the 30S ribosome by the aminoglycoside-resistance methyltransferase NpmA." Proc.Natl.Acad.Sci.USA, 111, 6275-6280. doi: 10.1073/pnas.1402789111. Crystal structure of the aminoglycoside resistance methyltransferase npma bound to the 30s ribosomal subunit. SNAP output
4p3e RNA binding protein-RNA X-ray (3.5 Å) Grotwinkel JT, Wild K, Segnitz B, Sinning I (2014) "SRP RNA remodeling by SRP68 explains its role in protein translocation." Science, 344, 101-104. doi: 10.1126/science.1249094. Structure of the human srp s domain. SNAP output
4pdb ribosomal protein-RNA X-ray (2.6 Å) Davlieva M, Donarski J, Wang J, Shamoo Y, Nikonowicz EP (2014) "Structure analysis of free and bound states of an RNA aptamer against ribosomal protein S8 from Bacillus anthracis." Nucleic Acids Res., 42, 10795-10808. doi: 10.1093/nar/gku743. Crystal structure of bacillus anthracis ribosomal protein s8 in complex with an RNA aptamer. SNAP output
4peh hydrolase-RNA X-ray (2.1 Å) Montemayor EJ, Katolik A, Clark NE, Taylor AB, Schuermann JP, Combs DJ, Johnsson R, Holloway SP, Stevens SW, Damha MJ, Hart PJ (2014) "Structural basis of lariat RNA recognition by the intron debranching enzyme Dbr1." Nucleic Acids Res., 42, 10845-10855. doi: 10.1093/nar/gku725. Dbr1 in complex with synthetic linear RNA. SNAP output
4pjo splicing X-ray (3.3 Å) Kondo Y, Oubridge C, van Roon AM, Nagai K (2015) "Crystal structure of human U1 snRNP, a small nuclear ribonucleoprotein particle, reveals the mechanism of 5' splice site recognition." Elife, 4. doi: 10.7554/eLife.04986. Minimal u1 snrnp. SNAP output
4pkd gene regulation X-ray (2.5 Å) Kondo Y, Oubridge C, van Roon AM, Nagai K (2015) "Crystal structure of human U1 snRNP, a small nuclear ribonucleoprotein particle, reveals the mechanism of 5' splice site recognition." Elife, 4. doi: 10.7554/eLife.04986. U1-70k in complex with u1 snrna stem-loops 1 and u1-a rrm in complex with stem-loop 2. SNAP output
4pmi RNA binding protein-RNA X-ray (3.2 Å) Jayaraman B, Crosby DC, Homer C, Ribeiro I, Mavor D, Frankel AD (2014) "RNA-directed remodeling of the HIV-1 protein Rev orchestrates assembly of the Rev-Rev response element complex." Elife, 4, e04120. doi: 10.7554/eLife.04120. Crystal structure of rev and rev-response-element RNA complex. SNAP output
4pmw hydrolase-RNA X-ray (2.95 Å) Faehnle CR, Walleshauser J, Joshua-Tor L (2014) "Mechanism of Dis3l2 substrate recognition in the Lin28-let-7 pathway." Nature, 514, 252-256. doi: 10.1038/nature13553. Structure of mouse dis3l2 in complex with oligou RNA substrate. SNAP output
4pr6 RNA binding protein-RNA X-ray (2.3 Å) Kapral GJ, Jain S, Noeske J, Doudna JA, Richardson DC, Richardson JS (2014) "New tools provide a second look at HDV ribozyme structure, dynamics and cleavage." Nucleic Acids Res., 42, 12833-12846. doi: 10.1093/nar/gku992. A second look at the hdv ribozyme structure and dynamics.. SNAP output
4prf RNA binding protein-RNA X-ray (2.395 Å) Kapral GJ, Jain S, Noeske J, Doudna JA, Richardson DC, Richardson JS (2014) "New tools provide a second look at HDV ribozyme structure, dynamics and cleavage." Nucleic Acids Res., 42, 12833-12846. doi: 10.1093/nar/gku992. A second look at the hdv ribozyme structure and dynamics.. SNAP output
4q9q RNA X-ray (2.45 Å) Huang H, Suslov NB, Li NS, Shelke SA, Evans ME, Koldobskaya Y, Rice PA, Piccirilli JA (2014) "A G-quadruplex-containing RNA activates fluorescence in a GFP-like fluorophore." Nat.Chem.Biol., 10, 686-691. doi: 10.1038/nchembio.1561. Crystal structure of an RNA aptamer bound to bromo-ligand analog in complex with fab. SNAP output
4q9r RNA-immune system X-ray (3.12 Å) Huang H, Suslov NB, Li NS, Shelke SA, Evans ME, Koldobskaya Y, Rice PA, Piccirilli JA (2014) "A G-quadruplex-containing RNA activates fluorescence in a GFP-like fluorophore." Nat.Chem.Biol., 10, 686-691. doi: 10.1038/nchembio.1561. Crystal structure of an RNA aptamer bound to trifluoroethyl-ligand analog in complex with fab. SNAP output
4qei ligase-RNA X-ray (2.875 Å) Deng X, Qin X, Chen L, Jia Q, Zhang Y, Zhang Z, Lei D, Ren G, Zhou Z, Wang Z, Li Q, Xie W (2016) "Large Conformational Changes of Insertion 3 in Human Glycyl-tRNA Synthetase (hGlyRS) during Catalysis." J.Biol.Chem., 291, 5740-5752. doi: 10.1074/jbc.M115.679126. Two distinct conformational states of glyrs captured in crystal lattice. SNAP output
4qg3 ribosomal protein-RNA X-ray (2.0 Å) Tishchenko S, Kostareva O, Gabdulkhakov A, Mikhaylina A, Nikonova E, Nevskaya N, Sarskikh A, Piendl W, Garber M, Nikonov S (2015) "Protein-RNA affinity of ribosomal protein L1 mutants does not correlate with the number of intermolecular interactions." Acta Crystallogr.,Sect.D, 71, 376-386. doi: 10.1107/S1399004714026248. Crystal structure of mutant ribosomal protein g219v tthl1 in complex with 80nt 23s RNA from thermus thermophilus. SNAP output
4qi2 RNA binding protein-RNA X-ray (3.0 Å) Schlundt A, Heinz GA, Janowski R, Geerlof A, Stehle R, Heissmeyer V, Niessing D, Sattler M (2014) "Structural basis for RNA recognition in roquin-mediated post-transcriptional gene regulation." Nat.Struct.Mol.Biol., 21, 671-678. doi: 10.1038/nsmb.2855. X-ray structure of the roq domain from murine roquin-1 in complex with a 23-mer tnf-cde RNA. SNAP output
4qik RNA binding protein-RNA X-ray (1.9 Å) Tan D, Zhou M, Kiledjian M, Tong L (2014) "The ROQ domain of Roquin recognizes mRNA constitutive-decay element and double-stranded RNA." Nat.Struct.Mol.Biol., 21, 679-685. doi: 10.1038/nsmb.2857. Crystal structure of the roq domain of human roquin in complex with the tnf23 RNA duplex. SNAP output
4qil RNA binding protein-RNA X-ray (2.9 Å) Tan D, Zhou M, Kiledjian M, Tong L (2014) "The ROQ domain of Roquin recognizes mRNA constitutive-decay element and double-stranded RNA." Nat.Struct.Mol.Biol., 21, 679-685. doi: 10.1038/nsmb.2857. Crystal structure of the roq domain of human roquin in complex with the hmg19 stem-loop RNA. SNAP output
4qm6 transferase-RNA X-ray (1.5 Å) Das U, Wang LK, Smith P, Munir A, Shuman S (2014) "Structures of bacterial polynucleotide kinase in a michaelis complex with nucleoside triphosphate (NTP)-Mg2+ and 5'-OH RNA and a mixed substrate-product complex with NTP-Mg2+ and a 5'-phosphorylated oligonucleotide." J.Bacteriol., 196, 4285-4292. doi: 10.1128/JB.02197-14. Structure of bacterial polynucleotide kinase bound to gtp and RNA. SNAP output
4qoz RNA-hydrolase-RNA binding protein X-ray (2.304 Å) Zhang J, Tan D, DeRose EF, Perera L, Dominski Z, Marzluff WF, Tong L, Hall TM (2014) "Molecular mechanisms for the regulation of histone mRNA stem-loop-binding protein by phosphorylation." Proc.Natl.Acad.Sci.USA, 111, E2937-E2946. doi: 10.1073/pnas.1406381111. Crystal structure of the histone mrna stem-loop, stem-loop binding protein (phosphorylated), and 3'hexo ternary complex. SNAP output
4qpx hydrolase-RNA X-ray (1.86 Å) Zamyatkin D, Rao C, Hoffarth E, Jurca G, Rho H, Parra F, Grochulski P, Ng KK (2014) "Structure of a backtracked state reveals conformational changes similar to the state following nucleotide incorporation in human norovirus polymerase." Acta Crystallogr.,Sect.D, 70, 3099-3109. doi: 10.1107/S1399004714021518. Nv polymerase post-incorporation-like complex. SNAP output
4qqb tranlation-RNA X-ray (2.8 Å) Hennig J, Militti C, Popowicz GM, Wang I, Sonntag M, Geerlof A, Gabel F, Gebauer F, Sattler M (2014) "Structural basis for the assembly of the Sxl-Unr translation regulatory complex." Nature, 515, 287-290. doi: 10.1038/nature13693. Structural basis for the assembly of the sxl-unr translation regulatory complex. SNAP output
4qu6 RNA binding protein-RNA X-ray (1.75 Å) Joint Center for Structural Genomics (JCSG), Partnership for T-Cell Biology (TCELL) "Crystal structure of a G-rich RNA sequence binding factor 1 (GRSF1) from Homo sapiens at 1.75 A resolution." Crystal structure of a g-rich RNA sequence binding factor 1 (grsf1) from homo sapiens at 1.75 Å resolution. SNAP output
4qu7 RNA binding protein-RNA X-ray (2.5 Å) Joint Center for Structural Genomics (JCSG), Partnership for T-Cell Biology (TCELL) "Crystal structure of a G-rich RNA sequence binding factor 1 (GRSF1) from Homo sapiens at 2.50 A resolution." Crystal structure of a g-rich RNA sequence binding factor 1 (grsf1) from homo sapiens at 2.50 Å resolution. SNAP output
4qvc RNA binding protein-RNA X-ray (1.99 Å) Wang LJ, Wang WW, Li FD, Zhang J, Wu JH, Gong QG, Shi YY (2015) "Structural insights into the recognition of the internal A-rich linker from OxyS sRNA by Escherichia coli Hfq." Nucleic Acids Res., 43, 2400-2411. doi: 10.1093/nar/gkv072. E.coli hfq in complex with RNA aus. SNAP output
4qvd RNA binding protein-RNA X-ray (1.972 Å) Wang LJ, Wang WW, Li FD, Zhang J, Wu JH, Gong QG, Shi YY (2015) "Structural insights into the recognition of the internal A-rich linker from OxyS sRNA by Escherichia coli Hfq." Nucleic Acids Res., 43, 2400-2411. doi: 10.1093/nar/gkv072. E.coli hfq in complex with RNA ads. SNAP output
4qvi ribosomal protein-RNA X-ray (1.9 Å) Tishchenko S, Kostareva O, Gabdulkhakov A, Mikhaylina A, Nikonova E, Nevskaya N, Sarskikh A, Piendl W, Garber M, Nikonov S (2015) "Protein-RNA affinity of ribosomal protein L1 mutants does not correlate with the number of intermolecular interactions." Acta Crystallogr.,Sect.D, 71, 376-386. doi: 10.1107/S1399004714026248. Crystal structure of mutant ribosomal protein m218l tthl1 in complex with 80nt 23s RNA from thermus thermophilus. SNAP output
4r3i RNA binding protein-RNA X-ray (1.8 Å) Xu C, Wang X, Liu K, Roundtree IA, Tempel W, Li Y, Lu Z, He C, Min J (2014) "Structural basis for selective binding of m(6)A RNA by the YTHDC1 YTH domain." Nat.Chem.Biol., 10, 927-929. doi: 10.1038/nchembio.1654. The crystal structure of an RNA complex. SNAP output
4r8i cytokine-RNA X-ray (2.05 Å) Oberthur D, Achenbach J, Gabdulkhakov A, Buchner K, Maasch C, Falke S, Rehders D, Klussmann S, Betzel C (2015) "Crystal structure of a mirror-image L-RNA aptamer (Spiegelmer) in complex with the natural L-protein target CCL2." Nat Commun, 6, 6923. doi: 10.1038/ncomms7923. High resolution structure of a mirror-image RNA oligonucleotide aptamer in complex with the chemokine ccl2. SNAP output
4rcj RNA binding protein-RNA X-ray (1.6 Å) Xu C, Liu K, Ahmed H, Loppnau P, Schapira M, Min J (2015) "Structural Basis for the Discriminative Recognition of N6-Methyladenosine RNA by the Human YT521-B Homology Domain Family of Proteins." J.Biol.Chem., 290, 24902-24913. doi: 10.1074/jbc.M115.680389. Crystal structure of ythdf1 yth domain in complex with 5mer m6a RNA. SNAP output
4rcm RNA binding protein-RNA X-ray (1.8 Å) Xu C, Liu K, Ahmed H, Loppnau P, Schapira M, Min J (2015) "Structural Basis for the Discriminative Recognition of N6-Methyladenosine RNA by the Human YT521-B Homology Domain Family of Proteins." J.Biol.Chem., 290, 24902-24913. doi: 10.1074/jbc.M115.680389. Crystal structure of the pho92 yth domain in complex with m6a. SNAP output
4rdx ligase-RNA X-ray (2.55 Å) Tian Q, Wang C, Liu Y, Xie W (2015) "Structural basis for recognition of G-1-containing tRNA by histidyl-tRNA synthetase." Nucleic Acids Res., 43, 2980-2990. doi: 10.1093/nar/gkv129. Structure of histidinyl-trna synthetase in complex with trna(his). SNAP output
4rmo toxin-RNA X-ray (2.2 Å) Rao F, Short FL, Voss JE, Blower TR, Orme AL, Whittaker TE, Luisi BF, Salmond GP (2015) "Co-evolution of quaternary organization and novel RNA tertiary interactions revealed in the crystal structure of a bacterial protein-RNA toxin-antitoxin system." Nucleic Acids Res., 43, 9529-9540. doi: 10.1093/nar/gkv868. Crystal structure of the cptin type iii toxin-antitoxin system from eubacterium rectale. SNAP output
4rqe ligase-RNA X-ray (4.0 Å) Wang C, Guo Y, Tian Q, Jia Q, Gao Y, Zhang Q, Zhou C, Xie W (2015) "SerRS-tRNA Sec complex structures reveal mechanism of the first step in selenocysteine biosynthesis." Nucleic Acids Res. doi: 10.1093/nar/gkv996. Human seryl-trna synthetase dimer complexed with two molecules of trnasec. SNAP output
4rqf ligase-RNA X-ray (3.503 Å) Wang C, Guo Y, Tian Q, Jia Q, Gao Y, Zhang Q, Zhou C, Xie W (2015) "SerRS-tRNA Sec complex structures reveal mechanism of the first step in selenocysteine biosynthesis." Nucleic Acids Res. doi: 10.1093/nar/gkv996. Human seryl-trna synthetase dimer complexed with one molecule of trnasec. SNAP output
4rwn transferase-RNA X-ray (2.0 Å) Lohofener J, Steinke N, Kay-Fedorov P, Baruch P, Nikulin A, Tishchenko S, Manstein DJ, Fedorov R (2015) "The Activation Mechanism of 2'-5'-Oligoadenylate Synthetase Gives New Insights Into OAS/cGAS Triggers of Innate Immunity." Structure, 23, 851-862. doi: 10.1016/j.str.2015.03.012. Crystal structure of the pre-reactive state of porcine oas1. SNAP output
4rwo transferase-RNA X-ray (2.2 Å) Lohofener J, Steinke N, Kay-Fedorov P, Baruch P, Nikulin A, Tishchenko S, Manstein DJ, Fedorov R (2015) "The Activation Mechanism of 2'-5'-Oligoadenylate Synthetase Gives New Insights Into OAS/cGAS Triggers of Innate Immunity." Structure, 23, 851-862. doi: 10.1016/j.str.2015.03.012. Crystal structure of the porcine oas1 l149r mutant in complex with dsrna and apcpp in the amp donor position. SNAP output
4rwp transferase-RNA X-ray (2.25 Å) Lohofener J, Steinke N, Kay-Fedorov P, Baruch P, Nikulin A, Tishchenko S, Manstein DJ, Fedorov R (2015) "The Activation Mechanism of 2'-5'-Oligoadenylate Synthetase Gives New Insights Into OAS/cGAS Triggers of Innate Immunity." Structure, 23, 851-862. doi: 10.1016/j.str.2015.03.012. Crystal structure of porcine oas1 in complex with dsrna. SNAP output
4s2x hydrolase-RNA X-ray (1.5 Å) Vasilyev N, Serganov A (2015) "Structures of RNA Complexes with the Escherichia coli RNA Pyrophosphohydrolase RppH Unveil the Basis for Specific 5'-End-dependent mRNA Decay." J.Biol.Chem., 290, 9487-9499. doi: 10.1074/jbc.M114.634824. Structure of e. coli rpph bound to RNA and two magnesium ions. SNAP output
4s2y hydrolase-RNA X-ray (1.6 Å) Vasilyev N, Serganov A (2015) "Structures of RNA Complexes with the Escherichia coli RNA Pyrophosphohydrolase RppH Unveil the Basis for Specific 5'-End-dependent mRNA Decay." J.Biol.Chem., 290, 9487-9499. doi: 10.1074/jbc.M114.634824. Structure of e. coli rpph bound to RNA and three magnesium ions. SNAP output
4s3n transferase-RNA X-ray (2.0 Å) Donovan J, Whitney G, Rath S, Korennykh A (2015) "Structural mechanism of sensing long dsRNA via a noncatalytic domain in human oligoadenylate synthetase 3." Proc.Natl.Acad.Sci.USA, 112, 3949-3954. doi: 10.1073/pnas.1419409112. Crystal structure of human oas3 domain i in complex with dsrna. SNAP output
4tu0 viral protein X-ray (2.3 Å) Morin B, Ferron FP, Malet H, Coutard B, Canard B "CRYSTAL STRUCTURE OF CHIKUNGUNYA VIRUS NSP3 MACRO DOMAIN IN COMPLEX WITH A 2'-5' OLIGOADENYLATE TRIMER." Crystal structure of chikungunya virus nsp3 macro domain in complex with a 2'-5' oligoadenylate trimer. SNAP output
4tuw RNA binding protein-RNA X-ray (2.902 Å) Zhang J, Tan D, DeRose EF, Perera L, Dominski Z, Marzluff WF, Tong L, Hall TM (2014) "Molecular mechanisms for the regulation of histone mRNA stem-loop-binding protein by phosphorylation." Proc.Natl.Acad.Sci.USA, 111, E2937-E2946. doi: 10.1073/pnas.1406381111. Drosophila stem-loop binding protein complexed with histone mrna stem-loop, phospho mimic of tpnk and c-terminal region. SNAP output
4tux RNA binding protein-RNA X-ray (3.08 Å) Zhang J, Tan D, DeRose EF, Perera L, Dominski Z, Marzluff WF, Tong L, Hall TM (2014) "Molecular mechanisms for the regulation of histone mRNA stem-loop-binding protein by phosphorylation." Proc.Natl.Acad.Sci.USA, 111, E2937-E2946. doi: 10.1073/pnas.1406381111. Drosophila stem-loop binding protein complexed with histone mrna stem-loop. SNAP output
4tv0 RNA binding protein-RNA X-ray (2.601 Å) Zhang J, Tan D, DeRose EF, Perera L, Dominski Z, Marzluff WF, Tong L, Hall TM (2014) "Molecular mechanisms for the regulation of histone mRNA stem-loop-binding protein by phosphorylation." Proc.Natl.Acad.Sci.USA, 111, E2937-E2946. doi: 10.1073/pnas.1406381111. Drosophila stem-loop binding protein complexed with histone mrna stem-loop, selenomethionine derivative. SNAP output
4tyw RNA binding protein-RNA X-ray (2.197 Å) Mallam AL, Sidote DJ, Lambowitz AM (2014) "Molecular insights into RNA and DNA helicase evolution from the determinants of specificity for a DEAD-box RNA helicase." Elife, 3, e04630. doi: 10.7554/eLife.04630. Dead-box helicase mss116 bound to ssrna and adp-bef. SNAP output
4tyy RNA binding protein-RNA X-ray (2.74 Å) Mallam AL, Sidote DJ, Lambowitz AM (2014) "Molecular insights into RNA and DNA helicase evolution from the determinants of specificity for a DEAD-box RNA helicase." Elife, 3, e04630. doi: 10.7554/eLife.04630. Dead-box helicase mss116 bound to ssrna and cdp-bef. SNAP output
4tz0 RNA binding protein-RNA X-ray (2.35 Å) Mallam AL, Sidote DJ, Lambowitz AM (2014) "Molecular insights into RNA and DNA helicase evolution from the determinants of specificity for a DEAD-box RNA helicase." Elife, 3, e04630. doi: 10.7554/eLife.04630. Dead-box helicase mss116 bound to ssrna and gdp-bef. SNAP output
4tz6 RNA binding protein-RNA X-ray (3.209 Å) Mallam AL, Sidote DJ, Lambowitz AM (2014) "Molecular insights into RNA and DNA helicase evolution from the determinants of specificity for a DEAD-box RNA helicase." Elife, 3, e04630. doi: 10.7554/eLife.04630. Dead-box helicase mss116 bound to ssrna and udp-bef. SNAP output
4tzp ribosomal protein-RNA X-ray (8.503 Å) Zhang J, Ferre-D'Amare AR (2014) "Dramatic Improvement of Crystals of Large RNAs by Cation Replacement and Dehydration." Structure, 22, 1363-1371. doi: 10.1016/j.str.2014.07.011. As grown, untreated co-crystals of the ternary complex containing a t-box stem i RNA, its cognate trnagly, and b. subtilis ybxf protein. SNAP output
4tzv ribosomal protein-RNA X-ray (5.03 Å) Zhang J, Ferre-D'Amare AR (2014) "Dramatic Improvement of Crystals of Large RNAs by Cation Replacement and Dehydration." Structure, 22, 1363-1371. doi: 10.1016/j.str.2014.07.011. Co-crystals of the ternary complex containing a t-box stem i RNA, its cognate trnagly, and b. subtilis ybxf protein, treated by removing lithium sulfate post crystallization. SNAP output
4tzw ribosomal protein-RNA X-ray (4.671 Å) Zhang J, Ferre-D'Amare AR (2014) "Dramatic Improvement of Crystals of Large RNAs by Cation Replacement and Dehydration." Structure, 22, 1363-1371. doi: 10.1016/j.str.2014.07.011. Co-crystals of the ternary complex containing a t-box stem i RNA, its cognate trnagly, and b. subtilis ybxf protein, treated by removing lithium sulfate and replacing mg2+ with sr2+ post crystallization. SNAP output
4tzz ribosomal protein-RNA X-ray (3.64 Å) Zhang J, Ferre-D'Amare AR (2014) "Dramatic Improvement of Crystals of Large RNAs by Cation Replacement and Dehydration." Structure, 22, 1363-1371. doi: 10.1016/j.str.2014.07.011. Co-crystals of the ternary complex containing a t-box stem i RNA, its cognate trnagly, and b. subtilis ybxf protein, treated by removing lithium sulfate and increasing peg3350 concentration from 20% to 45% post crystallization. SNAP output
4u67 ribosome X-ray (3.65 Å) Wekselman I, Zimmerman E, Davidovich C, Belousoff M, Matzov D, Krupkin M, Rozenberg H, Bashan A, Friedlander G, Kjeldgaard J, Ingmer H, Lindahl L, Zengel JM, Yonath A (2017) "The Ribosomal Protein uL22 Modulates the Shape of the Protein Exit Tunnel." Structure, 25, 1233-1241.e3. doi: 10.1016/j.str.2017.06.004. Crystal structure of the large ribosomal subunit (50s) of deinococcus radiodurans containing a three residue insertion in l22. SNAP output
4u7u RNA binding protein-RNA X-ray (3.003 Å) Zhao H, Sheng G, Wang J, Wang M, Bunkoczi G, Gong W, Wei Z, Wang Y (2014) "Crystal structure of the RNA-guided immune surveillance Cascade complex in Escherichia coli." Nature, 515, 147-150. doi: 10.1038/nature13733. Crystal structure of RNA-guided immune cascade complex from e.coli. SNAP output
4u8t RNA binding protein-RNA X-ray (2.7 Å) Luo S, Tong L (2014) "Molecular basis for the recognition of methylated adenines in RNA by the eukaryotic YTH domain." Proc.Natl.Acad.Sci.USA, 111, 13834-13839. doi: 10.1073/pnas.1412742111. Crystal structure of yth domain of zygosaccharomyces rouxii mrb1 protein in complex with n6-methyladenosine RNA. SNAP output
4udv viral protein cryo-EM (3.35 Å) Fromm SA, Bharat TAM, Jakobi AJ, Hagen WJH, Sachse C (2015) "Seeing Tobacco Mosaic Virus Through Direct Electron Detectors." J.Struct.Biol., 189, 87. doi: 10.1016/J.JSB.2014.12.002. cryo-EM structure of tmv at 3.35 Å resolution. SNAP output
4ue4 translation cryo-EM (7.0 Å) Beckert B, Kedrov A, Sohmen D, Kempf G, Wild K, Sinning I, Stahlberg H, Wilson DN, Beckmann R (2015) "Translational Arrest by a Prokaryotic Signal Recognition Particle is Mediated by RNA Interactions." Nat.Struct.Mol.Biol., 22, 767. doi: 10.1038/NSMB.3086. Structural basis for targeting and elongation arrest of bacillus signal recognition particle. SNAP output
4ue5 translation cryo-EM (9.0 Å) Beckert B, Kedrov A, Sohmen D, Kempf G, Wild K, Sinning I, Stahlberg H, Wilson DN, Beckmann R (2015) "Translational Arrest by a Prokaryotic Signal Recognition Particle is Mediated by RNA Interactions." Nat.Struct.Mol.Biol., 22, 767. doi: 10.1038/NSMB.3086. Structural basis for targeting and elongation arrest of bacillus signal recognition particle. SNAP output
4uer translation cryo-EM (6.47 Å) Aylett CHS, Boehringer D, Erzberger JP, Schaefer T, Ban N (2015) "Structure of a Yeast 40S-Eif1-Eif1A-Eif3-Eif3J Initiation Complex." Nat.Struct.Mol.Biol., 22, 269. doi: 10.1038/NSMB.2963. 40s-eif1-eif1a-eif3-eif3j translation initiation complex from lachancea kluyveri. SNAP output
4uft RNA binding protein cryo-EM (4.3 Å) Gutsche I, Desfosses A, Effantin G, Ling WL, Haupt M, Ruigrok RWH, Sachse C, Schoehn G (2015) "Near-Atomic Cryo-Em Structure of the Helical Measles Virus Nucleocapsid." Science, 348, 704. doi: 10.1126/SCIENCE.AAA5137. Structure of the helical measles virus nucleocapsid. SNAP output
4uy8 ribosome cryo-EM (3.8 Å) Bischoff L, Berninghausen O, Beckmann R (2014) "Molecular Basis for the Ribosome Functioning as an L-Tryptophan Sensor." Cell Rep., 9, 469. doi: 10.1016/J.CELREP.2014.09.011. Molecular basis for the ribosome functioning as a l-tryptophan sensor - cryo-EM structure of a tnac stalled e.coli ribosome. SNAP output
4uyj signaling protein X-ray (3.35 Å) Bousset L, Mary C, Brooks MA, Scherrer A, Strub K, Cusack S (2014) "Crystal Structure of a Signal Recognition Particle Alu Domain in the Elongation Arrest Conformation." RNA, 20, 1955. doi: 10.1261/RNA.047209.114. Crystal structure of a signal recognition particle alu domain in the elongation arrest conformation. SNAP output
4uyk signaling protein X-ray (3.22 Å) Bousset L, Mary C, Brooks MA, Scherrer A, Strub K, Cusack S (2014) "Crystal Structure of a Signal Recognition Particle Alu Domain in the Elongation Arrest Conformation." RNA, 20, 1955. doi: 10.1261/RNA.047209.114. Crystal structure of a signal recognition particle alu domain in the elongation arrest conformation. SNAP output
4v19 ribosome cryo-EM (3.4 Å) Greber BJ, Boehringer D, Leibundgut M, Bieri P, Leitner A, Schmitz N, Aebersold R, Ban N (2014) "The Complete Structure of the Large Subunit of the Mammalian Mitochondrial Ribosome." Nature, 515, 283. doi: 10.1038/NATURE13895. Structure of the large subunit of the mammalian mitoribosome, part 1 of 2. SNAP output
4v2s RNA binding protein-RNA X-ray (3.48 Å) Dimastrogiovanni D, Frohlich KS, Bandyra KJ, Bruce HA, Hohensee S, Vogel J, Luisi BF (2014) "Recognition of the small regulatory RNA RydC by the bacterial Hfq protein." Elife, 3. doi: 10.7554/eLife.05375. Crystal structure of hfq in complex with the srna rydc. SNAP output
4w5n hydrolase-RNA X-ray (2.9 Å) Schirle NT, Sheu-Gruttadauria J, MacRae IJ (2014) "Gene regulation. Structural basis for microRNA targeting." Science, 346, 608-613. doi: 10.1126/science.1258040. The crystal structure of human argonaute2 bound to a defined guide RNA. SNAP output
4w5o hydrolase-RNA X-ray (1.802 Å) Schirle NT, Sheu-Gruttadauria J, MacRae IJ (2014) "Gene regulation. Structural basis for microRNA targeting." Science, 346, 608-613. doi: 10.1126/science.1258040. The crystal structure of human argonaute2 bound to a guide and target RNA containing seed pairing from 2-9. SNAP output
4w5q hydrolase-RNA X-ray (3.101 Å) Schirle NT, Sheu-Gruttadauria J, MacRae IJ (2014) "Gene regulation. Structural basis for microRNA targeting." Science, 346, 608-613. doi: 10.1126/science.1258040. The crystal structure of human argonaute2 bound to a guide and target RNA containing seed pairing from 2-8. SNAP output
4w5r hydrolase-RNA X-ray (2.5 Å) Schirle NT, Sheu-Gruttadauria J, MacRae IJ (2014) "Gene regulation. Structural basis for microRNA targeting." Science, 346, 608-613. doi: 10.1126/science.1258040. The crystal structure of human argonaute2 bound to a guide and target RNA containing seed pairing from 2-8 (long target). SNAP output
4w5t hydrolase-RNA X-ray (2.5 Å) Schirle NT, Sheu-Gruttadauria J, MacRae IJ (2014) "Gene regulation. Structural basis for microRNA targeting." Science, 346, 608-613. doi: 10.1126/science.1258040. The crystal structure of human argonaute2 bound to a guide and target RNA containing seed pairing from 2-7. SNAP output
4w90 RNA binding protein-RNA X-ray (3.118 Å) Jones CP, Ferre-D'Amare AR (2014) "Crystal structure of a c-di-AMP riboswitch reveals an internally pseudo-dimeric RNA." Embo J., 33, 2692-2703. doi: 10.15252/embj.201489209. Crystal structure of bacillus subtilis cyclic-di-amp riboswitch ydao. SNAP output
4w92 RNA binding protein-RNA X-ray (3.209 Å) Jones CP, Ferre-D'Amare AR (2014) "Crystal structure of a c-di-AMP riboswitch reveals an internally pseudo-dimeric RNA." Embo J., 33, 2692-2703. doi: 10.15252/embj.201489209. Crystal structure of bacillus subtilis cyclic-di-amp riboswitch ydao. SNAP output
4wal protein binding-RNA X-ray (2.2 Å) Jacewicz A, Chico L, Smith P, Schwer B, Shuman S (2015) "Structural basis for recognition of intron branchpoint RNA by yeast Msl5 and selective effects of interfacial mutations on splicing of yeast pre-mRNAs." Rna, 21, 401-414. doi: 10.1261/rna.048942.114. Crystal structure of selenomethionine msl5 protein in complex with RNA at 2.2 a. SNAP output
4wan protein binding-RNA X-ray (1.8 Å) Jacewicz A, Chico L, Smith P, Schwer B, Shuman S (2015) "Structural basis for recognition of intron branchpoint RNA by yeast Msl5 and selective effects of interfacial mutations on splicing of yeast pre-mRNAs." Rna, 21, 401-414. doi: 10.1261/rna.048942.114. Crystal structure of msl5 protein in complex with RNA at 1.8 a. SNAP output
4wc2 transferase-RNA X-ray (2.8 Å) Yamashita S, Martinez A, Tomita K (2015) "Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme." Structure, 23, 830-842. doi: 10.1016/j.str.2015.03.013. Crystal structure of trna nucleotidyltransferase complexed with a primer trna and an incoming atp analog. SNAP output
4wc3 transferase-RNA X-ray (3.1 Å) Yamashita S, Martinez A, Tomita K (2015) "Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme." Structure, 23, 830-842. doi: 10.1016/j.str.2015.03.013. Structure of trna-processing enzyme complex 1. SNAP output
4wc4 transferase-RNA X-ray (3.501 Å) Yamashita S, Martinez A, Tomita K (2015) "Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme." Structure, 23, 830-842. doi: 10.1016/j.str.2015.03.013. Trna-processing enzyme complex 2. SNAP output
4wc5 transferase-RNA X-ray (3.41 Å) Yamashita S, Martinez A, Tomita K (2015) "Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme." Structure, 23, 830-842. doi: 10.1016/j.str.2015.03.013. Structure of trna-processing enzyme complex 3. SNAP output
4wc6 transferase-RNA X-ray (3.41 Å) Yamashita S, Martinez A, Tomita K (2015) "Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme." Structure, 23, 830-842. doi: 10.1016/j.str.2015.03.013. Structure of trna-processing enzyme complex 4. SNAP output
4wc7 transferase-RNA X-ray (3.102 Å) Yamashita S, Martinez A, Tomita K (2015) "Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme." Structure, 23, 830-842. doi: 10.1016/j.str.2015.03.013. Structure of trna-processing enzyme complex 5. SNAP output
4wce ribosome X-ray (3.526 Å) Eyal Z, Matzov D, Krupkin M, Wekselman I, Paukner S, Zimmerman E, Rozenberg H, Bashan A, Yonath A (2015) "Structural insights into species-specific features of the ribosome from the pathogen Staphylococcus aureus." Proc.Natl.Acad.Sci.USA, 112, E5805-E5814. doi: 10.1073/pnas.1517952112. The crystal structure of the large ribosomal subunit of staphylococcus aureus. SNAP output
4wf9 ribosome X-ray (3.427 Å) Eyal Z, Matzov D, Krupkin M, Wekselman I, Paukner S, Zimmerman E, Rozenberg H, Bashan A, Yonath A (2015) "Structural insights into species-specific features of the ribosome from the pathogen Staphylococcus aureus." Proc.Natl.Acad.Sci.USA, 112, E5805-E5814. doi: 10.1073/pnas.1517952112. The crystal structure of the large ribosomal subunit of staphylococcus aureus in complex with telithromycin. SNAP output
4wfn ribosome X-ray (3.54 Å) Wekselman I, Zimmerman E, Davidovich C, Belousoff M, Matzov D, Krupkin M, Rozenberg H, Bashan A, Friedlander G, Kjeldgaard J, Ingmer H, Lindahl L, Zengel JM, Yonath A (2017) "The Ribosomal Protein uL22 Modulates the Shape of the Protein Exit Tunnel." Structure, 25, 1233-1241.e3. doi: 10.1016/j.str.2017.06.004. Crystal structure of the large ribosomal subunit (50s) of deinococcus radiodurans containing a three residue insertion in l22 in complex with erythromycin. SNAP output
4wj3 ligase-RNA X-ray (3.705 Å) Suzuki T, Nakamura A, Kato K, Soll D, Tanaka I, Sheppard K, Yao M (2015) "Structure of the Pseudomonas aeruginosa transamidosome reveals unique aspects of bacterial tRNA-dependent asparagine biosynthesis." Proc.Natl.Acad.Sci.USA, 112, 382-387. doi: 10.1073/pnas.1423314112. Crystal structure of the asparagine transamidosome from pseudomonas aeruginosa. SNAP output
4wj4 ligase-RNA X-ray (3.294 Å) Suzuki T, Nakamura A, Kato K, Soll D, Tanaka I, Sheppard K, Yao M (2015) "Structure of the Pseudomonas aeruginosa transamidosome reveals unique aspects of bacterial tRNA-dependent asparagine biosynthesis." Proc.Natl.Acad.Sci.USA, 112, 382-387. doi: 10.1073/pnas.1423314112. Crystal structure of non-discriminating aspartyl-trna synthetase from pseudomonas aeruginosa complexed with trna(asn) and aspartic acid. SNAP output
4wkr RNA binding protein X-ray (3.2 Å) Uchikawa E, Natchiar KS, Han X, Proux F, Roblin P, Zhang E, Durand A, Klaholz BP, Dock-Bregeon AC (2015) "Structural insight into the mechanism of stabilization of the 7SK small nuclear RNA by LARP7." Nucleic Acids Res., 43, 3373-3388. doi: 10.1093/nar/gkv173. Larp7 wrapping up the 3' hairpin of 7sk non-coding RNA (302-332). SNAP output
4wrt transferase-RNA X-ray (2.7 Å) Reich S, Guilligay D, Pflug A, Malet H, Berger I, Crepin T, Hart D, Lunardi T, Nanao M, Ruigrok RW, Cusack S (2014) "Structural insight into cap-snatching and RNA synthesis by influenza polymerase." Nature, 516, 361-366. doi: 10.1038/nature14009. Crystal structure of influenza b polymerase with bound vrna promoter (form flub2). SNAP output
4wsa transferase-RNA X-ray (3.4 Å) Reich S, Guilligay D, Pflug A, Malet H, Berger I, Crepin T, Hart D, Lunardi T, Nanao M, Ruigrok RW, Cusack S (2014) "Structural insight into cap-snatching and RNA synthesis by influenza polymerase." Nature, 516, 361-366. doi: 10.1038/nature14009. Crystal structure of influenza b polymerase bound to the vrna promoter (flub1 form). SNAP output
4wsb transferase-RNA X-ray (2.65 Å) Reich S, Guilligay D, Pflug A, Malet H, Berger I, Crepin T, Hart D, Lunardi T, Nanao M, Ruigrok RW, Cusack S (2014) "Structural insight into cap-snatching and RNA synthesis by influenza polymerase." Nature, 516, 361-366. doi: 10.1038/nature14009. Bat influenza a polymerase with bound vrna promoter. SNAP output
4wta transferase-RNA X-ray (2.8 Å) Appleby TC, Perry JK, Murakami E, Barauskas O, Feng J, Cho A, Fox D, Wetmore DR, McGrath ME, Ray AS, Sofia MJ, Swaminathan S, Edwards TE (2015) "Structural basis for RNA replication by the hepatitis C virus polymerase." Science, 347, 771-775. doi: 10.1126/science.1259210. Crystal structure of hcv ns5b genotype 2a jfh-1 isolate with s15g e86q e87q c223h v321i mutations and delta8 beta hairpin loop deletion in complex with udp, mn2+ and symmetrical primer template 5'-caaaauuu. SNAP output
4wtc transferase-RNA X-ray (2.75 Å) Appleby TC, Perry JK, Murakami E, Barauskas O, Feng J, Cho A, Fox D, Wetmore DR, McGrath ME, Ray AS, Sofia MJ, Swaminathan S, Edwards TE (2015) "Structural basis for RNA replication by the hepatitis C virus polymerase." Science, 347, 771-775. doi: 10.1126/science.1259210. Crystal structure of hcv ns5b genotype 2a jfh-1 isolate with s15g e86q e87q c223h v321i mutations and delta8 beta hairpin loop deletion in complex with cdp, mn2+ and symmetrical primer template 5'-agaaauuu. SNAP output
4wtd transferase-RNA X-ray (2.7 Å) Appleby TC, Perry JK, Murakami E, Barauskas O, Feng J, Cho A, Fox D, Wetmore DR, McGrath ME, Ray AS, Sofia MJ, Swaminathan S, Edwards TE (2015) "Structural basis for RNA replication by the hepatitis C virus polymerase." Science, 347, 771-775. doi: 10.1126/science.1259210. Crystal structure of hcv ns5b genotype 2a jfh-1 isolate with s15g e86q e87q c223h v321i mutations and delta8 beta hairpin loop deletion in complex with adp, mn2+ and symmetrical primer template 5'-auaaauuu. SNAP output
4wte transferase-RNA X-ray (2.9 Å) Appleby TC, Perry JK, Murakami E, Barauskas O, Feng J, Cho A, Fox D, Wetmore DR, McGrath ME, Ray AS, Sofia MJ, Swaminathan S, Edwards TE (2015) "Structural basis for RNA replication by the hepatitis C virus polymerase." Science, 347, 771-775. doi: 10.1126/science.1259210. Crystal structure of hcv ns5b genotype 2a jfh-1 isolate with s15g e86q e87q c223h v321i mutations and delta8 beta hairpin loop deletion in complex with gdp, mn2+ and symmetrical primer template 5'-acaaauuu. SNAP output
4wtf transferase-RNA X-ray (2.65 Å) Appleby TC, Perry JK, Murakami E, Barauskas O, Feng J, Cho A, Fox D, Wetmore DR, McGrath ME, Ray AS, Sofia MJ, Swaminathan S, Edwards TE (2015) "Structural basis for RNA replication by the hepatitis C virus polymerase." Science, 347, 771-775. doi: 10.1126/science.1259210. Crystal structure of hcv ns5b genotype 2a jfh-1 isolate with s15g e86q e87q c223h v321i mutations and delta8 beta hairpin loop deletion in complex with gs-639475, mn2+ and symmetrical primer template 5'-caaaauuu. SNAP output
4wtg transferase-RNA X-ray (2.9 Å) Appleby TC, Perry JK, Murakami E, Barauskas O, Feng J, Cho A, Fox D, Wetmore DR, McGrath ME, Ray AS, Sofia MJ, Swaminathan S, Edwards TE (2015) "Structural basis for RNA replication by the hepatitis C virus polymerase." Science, 347, 771-775. doi: 10.1126/science.1259210. Crystal structure of hcv ns5b genotype 2a jfh-1 isolate with s15g e86q e87q c223h v321i mutations and delta8 beta hairpin loop deletion in complex with sofosbuvir diphosphate gs-607596, mn2+ and symmetrical primer template 5'-caaaauuu. SNAP output
4wti transferase-RNA X-ray (2.8 Å) Appleby TC, Perry JK, Murakami E, Barauskas O, Feng J, Cho A, Fox D, Wetmore DR, McGrath ME, Ray AS, Sofia MJ, Swaminathan S, Edwards TE (2015) "Structural basis for RNA replication by the hepatitis C virus polymerase." Science, 347, 771-775. doi: 10.1126/science.1259210. Crystal structure of hcv ns5b genotype 2a jfh-1 isolate with s15g e86q e87q c223h v321i mutations in complex with RNA template 5'-acgg, RNA primer 5'-pcc, mn2+, and gdp. SNAP output
4wtj transferase-RNA X-ray (2.2 Å) Appleby TC, Perry JK, Murakami E, Barauskas O, Feng J, Cho A, Fox D, Wetmore DR, McGrath ME, Ray AS, Sofia MJ, Swaminathan S, Edwards TE (2015) "Structural basis for RNA replication by the hepatitis C virus polymerase." Science, 347, 771-775. doi: 10.1126/science.1259210. Crystal structure of hcv ns5b genotype 2a jfh-1 isolate with s15g e86q e87q c223h v321i mutations in complex with RNA template 5'-aucc, RNA primer 5'-pgg, mn2+, and adp. SNAP output
4wtk transferase-RNA X-ray (2.5 Å) Appleby TC, Perry JK, Murakami E, Barauskas O, Feng J, Cho A, Fox D, Wetmore DR, McGrath ME, Ray AS, Sofia MJ, Swaminathan S, Edwards TE (2015) "Structural basis for RNA replication by the hepatitis C virus polymerase." Science, 347, 771-775. doi: 10.1126/science.1259210. Crystal structure of hcv ns5b genotype 2a jfh-1 isolate with s15g e86q e87q c223h v321i mutations in complex with RNA template 5'-agcc, RNA primer 5'-pgg, mn2+, and cdp. SNAP output
4wtl transferase-RNA X-ray (2.0 Å) Appleby TC, Perry JK, Murakami E, Barauskas O, Feng J, Cho A, Fox D, Wetmore DR, McGrath ME, Ray AS, Sofia MJ, Swaminathan S, Edwards TE (2015) "Structural basis for RNA replication by the hepatitis C virus polymerase." Science, 347, 771-775. doi: 10.1126/science.1259210. Crystal structure of hcv ns5b genotype 2a jfh-1 isolate with s15g e86q e87q c223h v321i mutations in complex with RNA template 5'-uacc, RNA primer 5'-pgg, mn2+, and udp. SNAP output
4wtm transferase-RNA X-ray (2.15 Å) Appleby TC, Perry JK, Murakami E, Barauskas O, Feng J, Cho A, Fox D, Wetmore DR, McGrath ME, Ray AS, Sofia MJ, Swaminathan S, Edwards TE (2015) "Structural basis for RNA replication by the hepatitis C virus polymerase." Science, 347, 771-775. doi: 10.1126/science.1259210. Crystal structure of hcv ns5b genotype 2a jfh-1 isolate with s15g e86q e87q c223h v321i mutations in complex with RNA template 5'-uagg, RNA primer 5'-pcc, mn2+, and udp. SNAP output
4wzm transferase X-ray (2.52 Å) Ferrer-Orta C, de la Higuera I, Caridi F, Sanchez-Aparicio MT, Moreno E, Perales C, Singh K, Sarafianos SG, Sobrino F, Domingo E, Verdaguer N (2015) "Multifunctionality of a picornavirus polymerase domain: nuclear localization signal and nucleotide recognition." J.Virol., 89, 6848-6859. doi: 10.1128/JVI.03283-14. Mutant k18e of RNA dependent RNA polymerase from foot-and-mouth disease virus complexed with RNA. SNAP output
4wzq transferase X-ray (2.8 Å) Ferrer-Orta C, de la Higuera I, Caridi F, Sanchez-Aparicio MT, Moreno E, Perales C, Singh K, Sarafianos SG, Sobrino F, Domingo E, Verdaguer N (2015) "Multifunctionality of a picornavirus polymerase domain: nuclear localization signal and nucleotide recognition." J.Virol., 89, 6848-6859. doi: 10.1128/JVI.03283-14. Mutant k20e of RNA dependent RNA polymerase 3d from foot-and-mouth disease virus complexed with RNA. SNAP output
4x0a transferase-RNA X-ray (3.505 Å) Yamashita S, Martinez A, Tomita K (2015) "Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme." Structure, 23, 830-842. doi: 10.1016/j.str.2015.03.013. Structure of trna-processing enzyme complex 6. SNAP output
4x0b transferase-RNA X-ray (3.2 Å) Yamashita S, Martinez A, Tomita K (2015) "Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme." Structure, 23, 830-842. doi: 10.1016/j.str.2015.03.013. Structure of trna-processing enzyme complex 7. SNAP output
4x2b transferase X-ray (2.94 Å) Ferrer-Orta C, de la Higuera I, Caridi F, Sanchez-Aparicio MT, Moreno E, Perales C, Singh K, Sarafianos SG, Sobrino F, Domingo E, Verdaguer N (2015) "Multifunctionality of a picornavirus polymerase domain: nuclear localization signal and nucleotide recognition." J.Virol., 89, 6848-6859. doi: 10.1128/JVI.03283-14. K20a RNA dependent RNA polymerase mutant from foot-and-mouth disease virus complexed with an RNA. SNAP output
4x4n transferase-RNA X-ray (2.953 Å) Kuhn CD, Wilusz JE, Zheng Y, Beal PA, Joshua-Tor L (2015) "On-Enzyme Refolding Permits Small RNA and tRNA Surveillance by the CCA-Adding Enzyme." Cell, 160, 644-658. doi: 10.1016/j.cell.2015.01.005. Crystal structure of the a.fulgidus cca-adding enzyme in complex with a g70a arginyl-trna minihelix. SNAP output
4x4o RNA binding protein X-ray (3.201 Å) Kuhn CD, Wilusz JE, Zheng Y, Beal PA, Joshua-Tor L (2015) "On-Enzyme Refolding Permits Small RNA and tRNA Surveillance by the CCA-Adding Enzyme." Cell, 160, 644-658. doi: 10.1016/j.cell.2015.01.005. Crystal structure of the a.fulgidus cca-adding enzyme in complex with a g70a arginyl-trna minihelix and ctp. SNAP output
4x4p RNA binding protein X-ray (3.0 Å) Kuhn CD, Wilusz JE, Zheng Y, Beal PA, Joshua-Tor L (2015) "On-Enzyme Refolding Permits Small RNA and tRNA Surveillance by the CCA-Adding Enzyme." Cell, 160, 644-658. doi: 10.1016/j.cell.2015.01.005. Crystal structure of the a.fulgidus cca-adding enzyme in complex with a g70a arginyl-trna minihelix ending in ccac. SNAP output
4x4q RNA binding protein X-ray (3.15 Å) Kuhn CD, Wilusz JE, Zheng Y, Beal PA, Joshua-Tor L (2015) "On-Enzyme Refolding Permits Small RNA and tRNA Surveillance by the CCA-Adding Enzyme." Cell, 160, 644-658. doi: 10.1016/j.cell.2015.01.005. Crystal structure of the a.fulgidus cca-adding enzyme in complex with a g70a arginyl-trna minihelix ending in ccac and ctp. SNAP output
4x4r RNA binding protein X-ray (3.202 Å) Kuhn CD, Wilusz JE, Zheng Y, Beal PA, Joshua-Tor L (2015) "On-Enzyme Refolding Permits Small RNA and tRNA Surveillance by the CCA-Adding Enzyme." Cell, 160, 644-658. doi: 10.1016/j.cell.2015.01.005. Crystal structure of the a.fulgidus cca-adding enzyme in complex with a g70a arginyl-trna minihelix ending in ccacc and ampcpp. SNAP output
4x4s RNA binding protein X-ray (3.25 Å) Kuhn CD, Wilusz JE, Zheng Y, Beal PA, Joshua-Tor L (2015) "On-enzyme refolding permits small RNA and tRNA surveillance by the CCA-adding enzyme." Cell, 160, 644-658. doi: 10.1016/j.cell.2015.01.005. Crystal structure of the a.fulgidus cca-adding enzyme in complex with a g70a arginyl-trna minihelix ending in ccacc and ctp. SNAP output
4x4t transferase-RNA X-ray (2.5 Å) Kuhn CD, Wilusz JE, Zheng Y, Beal PA, Joshua-Tor L (2015) "On-Enzyme Refolding Permits Small RNA and tRNA Surveillance by the CCA-Adding Enzyme." Cell, 160, 644-658. doi: 10.1016/j.cell.2015.01.005. Crystal structure of the a.fulgidus cca-adding enzyme in complex with a g70a arginyl-trna minihelix ending in ccacca. SNAP output
4x4u RNA binding protein X-ray (2.7 Å) Kuhn CD, Wilusz JE, Zheng Y, Beal PA, Joshua-Tor L (2015) "On-Enzyme Refolding Permits Small RNA and tRNA Surveillance by the CCA-Adding Enzyme." Cell, 160, 644-658. doi: 10.1016/j.cell.2015.01.005. Crystal structure of the a.fulgidus cca-adding enzyme in complex with a human menbeta minihelix ending in ccacc. SNAP output
4x4v RNA binding protein X-ray (2.6 Å) Kuhn CD, Wilusz JE, Zheng Y, Beal PA, Joshua-Tor L (2015) "On-Enzyme Refolding Permits Small RNA and tRNA Surveillance by the CCA-Adding Enzyme." Cell, 160, 644-658. doi: 10.1016/j.cell.2015.01.005. Crystal structure of the a.fulgidus cca-adding enzyme in complex with a human menbeta minihelix ending in ccacc and ampcpp. SNAP output
4x62 ribosome-antibiotic X-ray (3.45 Å) Choi J, Ieong KW, Demirci H, Chen J, Petrov A, Prabhakar A, O'Leary SE, Dominissini D, Rechavi G, Soltis SM, Ehrenberg M, Puglisi JD (2016) "N(6)-methyladenosine in mRNA disrupts tRNA selection and translation-elongation dynamics." Nat.Struct.Mol.Biol., 23, 110-115. doi: 10.1038/nsmb.3148. Crystal structure of 30s ribosomal subunit from thermus thermophilus. SNAP output
4x64 ribosome-antibiotic X-ray (3.35 Å) Choi J, Ieong KW, Demirci H, Chen J, Petrov A, Prabhakar A, O'Leary SE, Dominissini D, Rechavi G, Soltis SM, Ehrenberg M, Puglisi JD (2016) "N(6)-methyladenosine in mRNA disrupts tRNA selection and translation-elongation dynamics." Nat.Struct.Mol.Biol., 23, 110-115. doi: 10.1038/nsmb.3148. Crystal structure of 30s ribosomal subunit from thermus thermophilus. SNAP output
4x65 ribosome-antibiotic X-ray (3.345 Å) Choi J, Ieong KW, Demirci H, Chen J, Petrov A, Prabhakar A, O'Leary SE, Dominissini D, Rechavi G, Soltis SM, Ehrenberg M, Puglisi JD (2016) "N(6)-methyladenosine in mRNA disrupts tRNA selection and translation-elongation dynamics." Nat.Struct.Mol.Biol., 23, 110-115. doi: 10.1038/nsmb.3148. Crystal structure of 30s ribosomal subunit from thermus thermophilus. SNAP output
4x66 ribosome-antibiotic X-ray (3.446 Å) Choi J, Ieong KW, Demirci H, Chen J, Petrov A, Prabhakar A, O'Leary SE, Dominissini D, Rechavi G, Soltis SM, Ehrenberg M, Puglisi JD (2016) "N(6)-methyladenosine in mRNA disrupts tRNA selection and translation-elongation dynamics." Nat.Struct.Mol.Biol., 23, 110-115. doi: 10.1038/nsmb.3148. Crystal structure of 30s ribosomal subunit from thermus thermophilus. SNAP output
4xbf oxidoreductase-transcription-RNA X-ray (2.803 Å) Hirschi A, Martin WJ, Luka Z, Loukachevitch LV, Reiter NJ (2016) "G-quadruplex RNA binding and recognition by the lysine-specific histone demethylase-1 enzyme." RNA, 22, 1250-1260. doi: 10.1261/rna.057265.116. Structure of lsd1:corest in complex with ssrna. SNAP output
4xco RNA binding protein X-ray (2.9 Å) Hainzl T, Sauer-Eriksson AE (2015) "Signal-sequence induced conformational changes in the signal recognition particle." Nat Commun, 6, 7163. doi: 10.1038/ncomms8163. Signal-sequence induced conformational changes in the signal recognition particle. SNAP output
4xjn viral protein-RNA X-ray (3.11 Å) Alayyoubi M, Leser GP, Kors CA, Lamb RA (2015) "Structure of the paramyxovirus parainfluenza virus 5 nucleoprotein-RNA complex." Proc.Natl.Acad.Sci.USA, 112, E1792-E1799. doi: 10.1073/pnas.1503941112. Structure of the parainfluenza virus 5 nucleocapsid-RNA complex: an insight into paramyxovirus polymerase activity. SNAP output
4xww RNA binding protein-RNA X-ray (1.7 Å) Zhao Y, Lu M, Zhang H, Hu J, Zhou C, Xu Q, Shah AMUH, Xu H, Wang L, Hua Y (2015) "Structural insights into catalysis and dimerization enhanced exonuclease activity of RNase J." Nucleic Acids Res., 43, 5550-5559. doi: 10.1093/nar/gkv444. Crystal structure of rnase j complexed with RNA. SNAP output
4y91 RNA binding protein-RNA X-ray (2.656 Å) Patterson J, Randolph PS, Mura C "Crystal Structure of a Thermotoga maritima Hfq homolog." Crystal structure of a thermotoga maritima hfq homolog. SNAP output
4yb1 RNA-RNA binding protein X-ray (2.081 Å) Ren A, Wang XC, Kellenberger CA, Rajashankar KR, Jones RA, Hammond MC, Patel DJ (2015) "Structural Basis for Molecular Discrimination by a 3',3'-cGAMP Sensing Riboswitch." Cell Rep, 11, 1-12. doi: 10.1016/j.celrep.2015.03.004. 20a mutant c-di-gmp vc2 riboswitch bound with 3',3'-cgamp. SNAP output
4yco oxidoreductase X-ray (2.1 Å) Byrne RT, Jenkins HT, Peters DT, Whelan F, Stowell J, Aziz N, Kasatsky P, Rodnina MV, Koonin EV, Konevega AL, Antson AA (2015) "Major reorientation of tRNA substrates defines specificity of dihydrouridine synthases." Proc.Natl.Acad.Sci.USA, 112, 6033-6037. doi: 10.1073/pnas.1500161112. E. coli dihydrouridine synthase c (dusc) in complex with trnaphe. SNAP output
4ycp oxidoreductase-RNA X-ray (2.55 Å) Byrne RT, Jenkins HT, Peters DT, Whelan F, Stowell J, Aziz N, Kasatsky P, Rodnina MV, Koonin EV, Konevega AL, Antson AA (2015) "Major reorientation of tRNA substrates defines specificity of dihydrouridine synthases." Proc.Natl.Acad.Sci.USA, 112, 6033-6037. doi: 10.1073/pnas.1500161112. E. coli dihydrouridine synthase c (dusc) in complex with trnatrp. SNAP output
4yhh ribosome X-ray (3.417 Å) Schedlbauer A, Kaminishi T, Ochoa-Lizarralde B, Dhimole N, Zhou S, Lopez-Alonso JP, Connell SR, Fucini P (2015) "Structural characterization of an alternative mode of tigecycline binding to the bacterial ribosome." Antimicrob.Agents Chemother., 59, 2849-2854. doi: 10.1128/AAC.04895-14. Crystal structure of the 30s ribosomal subunit from thermus thermophilus in complex with tigecycline. SNAP output
4yhw splicing X-ray (3.25 Å) Liu S, Mozaffari-Jovin S, Wollenhaupt J, Santos KF, Theuser M, Dunin-Horkawicz S, Fabrizio P, Bujnicki JM, Luhrmann R, Wahl MC (2015) "A composite double-/single-stranded RNA-binding region in protein Prp3 supports tri-snRNP stability and splicing." Elife, 4, e07320. doi: 10.7554/eLife.07320. Yeast prp3 (296-469) in complex with fragment of u4-u6 di-snrna. SNAP output
4yoe RNA binding protein-RNA X-ray (1.92 Å) Morgan CE, Meagher JL, Levengood JD, Delproposto J, Rollins C, Stuckey JA, Tolbert BS (2015) "The First Crystal Structure of the UP1 Domain of hnRNP A1 Bound to RNA Reveals a New Look for an Old RNA Binding Protein." J.Mol.Biol., 427, 3241-3257. doi: 10.1016/j.jmb.2015.05.009. Structure of up1 bound to RNA 5'-agu-3'. SNAP output
4yvi transferase-RNA X-ray (3.01 Å) Ito T, Masuda I, Yoshida K, Goto-Ito S, Sekine S, Suh SW, Hou YM, Yokoyama S (2015) "Structural basis for methyl-donor-dependent and sequence-specific binding to tRNA substrates by knotted methyltransferase TrmD." Proc.Natl.Acad.Sci.USA, 112, E4197-E4205. doi: 10.1073/pnas.1422981112. Crystal structure of h. influenzae trmd in complex with sinefungin and trna. SNAP output
4yvj transferase-RNA X-ray (2.9 Å) Ito T, Masuda I, Yoshida K, Goto-Ito S, Sekine S, Suh SW, Hou YM, Yokoyama S (2015) "Structural basis for methyl-donor-dependent and sequence-specific binding to tRNA substrates by knotted methyltransferase TrmD." Proc.Natl.Acad.Sci.USA, 112, E4197-E4205. doi: 10.1073/pnas.1422981112. Crystal structure of h. influenzae trmd in complex with sinefungin and trna variant (g36u). SNAP output
4yvk transferase-RNA X-ray (3.002 Å) Ito T, Masuda I, Yoshida K, Goto-Ito S, Sekine S, Suh SW, Hou YM, Yokoyama S (2015) "Structural basis for methyl-donor-dependent and sequence-specific binding to tRNA substrates by knotted methyltransferase TrmD." Proc.Natl.Acad.Sci.USA, 112, E4197-E4205. doi: 10.1073/pnas.1422981112. Crystal structure of h. influenzae trmd in complex with sinefungin and trna variant (g36c). SNAP output
4yy3 ribosome X-ray (3.6 Å) Schureck MA, Maehigashi T, Miles SJ, Marquez J, Dunham CM (2016) "mRNA bound to the 30S subunit is a HigB toxin substrate." Rna, 22, 1261-1270. doi: 10.1261/rna.056218.116. 30s ribosomal subunit- higb complex. SNAP output
4yye ligase-RNA X-ray (2.301 Å) Holman KM, Wu J, Ling J, Simonovic M (2016) "The crystal structure of yeast mitochondrial ThrRS in complex with the canonical threonine tRNA." Nucleic Acids Res., 44, 1428-1439. doi: 10.1093/nar/gkv1501. Crystal structure of the yeast mitochondrial threonyl-trna synthetase (mst1) in complex with the canonical trnathr and threonyl sulfamoyl adenylate. SNAP output
4z0c immune system X-ray (2.3 Å) Song W, Wang J, Han Z, Zhang Y, Zhang H, Wang W, Chang J, Xia B, Fan S, Zhang D, Wang J, Wang HW, Chai J (2015) "Structural basis for specific recognition of single-stranded RNA by Toll-like receptor 13." Nat.Struct.Mol.Biol., 22, 782-787. doi: 10.1038/nsmb.3080. Crystal structure of tlr13-ssrna13 complex. SNAP output
4z31 RNA binding protein-RNA X-ray (2.5 Å) Zhang Q, Fan L, Hou F, Dong A, Wang YX, Tong Y (2015) "New Insights into the RNA-Binding and E3 Ubiquitin Ligase Activities of Roquins." Sci Rep, 5, 15660. doi: 10.1038/srep15660. Crystal structure of the rc3h2 roq domain in complex with stem-loop and double-stranded forms of RNA. SNAP output
4z4c hydrolase-RNA X-ray (2.303 Å) Schirle NT, Sheu-Gruttadauria J, Chandradoss SD, Joo C, MacRae IJ (2015) "Water-mediated recognition of t1-adenosine anchors Argonaute2 to microRNA targets." Elife, 4. doi: 10.7554/eLife.07646. Human argonaute2 bound to t1-c target RNA. SNAP output
4z4d gene regulation-RNA X-ray (1.6 Å) Schirle NT, Sheu-Gruttadauria J, Chandradoss SD, Joo C, MacRae IJ (2015) "Water-mediated recognition of t1-adenosine anchors Argonaute2 to microRNA targets." Elife, 4. doi: 10.7554/eLife.07646. Human argonaute2 bound to t1-g target RNA. SNAP output
4z4e gene regulation-RNA X-ray (1.8 Å) Schirle NT, Sheu-Gruttadauria J, Chandradoss SD, Joo C, MacRae IJ (2015) "Water-mediated recognition of t1-adenosine anchors Argonaute2 to microRNA targets." Elife, 4. doi: 10.7554/eLife.07646. Human argonaute2 bound to t1-u target RNA. SNAP output
4z4f gene regulation-RNA X-ray (2.8 Å) Schirle NT, Sheu-Gruttadauria J, Chandradoss SD, Joo C, MacRae IJ (2015) "Water-mediated recognition of t1-adenosine anchors Argonaute2 to microRNA targets." Elife, 4. doi: 10.7554/eLife.07646. Human argonaute2 bound to t1-dap target RNA. SNAP output
4z4g gene regulation-RNA X-ray (2.7 Å) Schirle NT, Sheu-Gruttadauria J, Chandradoss SD, Joo C, MacRae IJ (2015) "Water-mediated recognition of t1-adenosine anchors Argonaute2 to microRNA targets." Elife, 4. doi: 10.7554/eLife.07646. Human argonaute2 bound to t1-inosine target RNA. SNAP output
4z4h gene regulation-RNA X-ray (2.504 Å) Schirle NT, Sheu-Gruttadauria J, Chandradoss SD, Joo C, MacRae IJ (2015) "Water-mediated recognition of t1-adenosine anchors Argonaute2 to microRNA targets." Elife, 4. doi: 10.7554/eLife.07646. Human argonaute2 a481t mutant bound to t1-a target RNA. SNAP output
4z4i gene regulation-RNA X-ray (2.801 Å) Schirle NT, Sheu-Gruttadauria J, Chandradoss SD, Joo C, MacRae IJ (2015) "Water-mediated recognition of t1-adenosine anchors Argonaute2 to microRNA targets." Elife, 4. doi: 10.7554/eLife.07646. Human argonaute2 a481t mutant bound to t1-g target RNA. SNAP output
4z7k hydrolase-RNA-DNA X-ray (3.0 Å) Shao Y, Richter H, Sun S, Sharma K, Urlaub H, Randau L, Li H (2016) "A Non-Stem-Loop CRISPR RNA Is Processed by Dual Binding Cas6." Structure, 24, 547-554. doi: 10.1016/j.str.2016.02.009. Crystal structure of crispr RNA processing endoribonuclease cas6b. SNAP output
4z7l hydrolase-RNA X-ray (3.503 Å) Shao Y, Richter H, Sun S, Sharma K, Urlaub H, Randau L, Li H (2016) "A Non-Stem-Loop CRISPR RNA Is Processed by Dual Binding Cas6." Structure, 24, 547-554. doi: 10.1016/j.str.2016.02.009. Crystal structure of cas6b. SNAP output
4z92 virus X-ray (3.1 Å) Kalynych S, Palkova L, Plevka P (2015) "The Structure of Human Parechovirus 1 Reveals an Association of the RNA Genome with the Capsid." J.Virol., 90, 1377-1386. doi: 10.1128/JVI.02346-15. Crystal structure of parechovirus-1 virion. SNAP output
4zdo transferase-RNA X-ray (2.65 Å) Puppala AK, French RL, Matthies D, Baxa U, Subramaniam S, Simonovic M (2016) "Structural basis for early-onset neurological disorders caused by mutations in human selenocysteine synthase." Sci Rep, 6, 32563. doi: 10.1038/srep32563. The crystal structure of t325s mutant of human sepsecs in complex with selenocysteine trna (trnasec). SNAP output
4zdp transferase-RNA X-ray (2.703 Å) Puppala AK, French RL, Matthies D, Baxa U, Subramaniam S, Simonovic M (2016) "Structural basis for early-onset neurological disorders caused by mutations in human selenocysteine synthase." Sci Rep, 6, 32563. doi: 10.1038/srep32563. The crystal structure of y334c mutant of human sepsecs in complex with selenocysteine trna (trnasec). SNAP output
4zld RNA binding protein-RNA X-ray (1.6 Å) Sakurai S, Ohto U, Shimizu T (2015) "Structure of human Roquin-2 and its complex with constitutive-decay element RNA." Acta Crystallogr.,Sect.F, 71, 1048-1054. doi: 10.1107/S2053230X15011887. Crystal structure of human roquin-2 roq domain in complex with roquin cde RNA. SNAP output
4zlr translation X-ray (2.3 Å) Loedige I, Jakob L, Treiber T, Ray D, Stotz M, Treiber N, Hennig J, Cook KB, Morris Q, Hughes TR, Engelmann JC, Krahn MP, Meister G (2015) "The Crystal Structure of the NHL Domain in Complex with RNA Reveals the Molecular Basis of Drosophila Brain-Tumor-Mediated Gene Regulation." Cell Rep, 13, 1206-1220. doi: 10.1016/j.celrep.2015.09.068. Structure of the brat-nhl domain bound to consensus RNA motif. SNAP output
4zt0 hydrolase-RNA X-ray (2.9 Å) Jiang F, Zhou K, Ma L, Gressel S, Doudna JA (2015) "A Cas9-guide RNA complex preorganized for target DNA recognition." Science, 348, 1477-1481. doi: 10.1126/science.aab1452. Crystal structure of catalytically-active streptococcus pyogenes cas9 in complex with single-guide RNA at 2.9 angstrom resolution. SNAP output
4zt9 hydrolase-RNA X-ray (3.1 Å) Jiang F, Zhou K, Ma L, Gressel S, Doudna JA (2015) "A Cas9-guide RNA complex preorganized for target DNA recognition." Science, 348, 1477-1481. doi: 10.1126/science.aab1452. Nuclease-inactive streptococcus pyogenes cas9 (d10a-h840a, dcas9) in complex with single-guide RNA at 3.1 angstrom resolution. SNAP output
5a0t hydrolase-RNA X-ray (2.283 Å) Pei XY, Bralley P, Jones GH, Luisi BF (2015) "Linkage of Catalysis and 5' End Recognition in Ribonuclease Rnase J." Nucleic Acids Res., 43, 8066. doi: 10.1093/NAR/GKV732. Catalysis and 5' end sensing by ribonuclease rnase j of the metallo- beta-lactamase family. SNAP output
5a0v hydrolase-RNA X-ray (2.8 Å) Pei XY, Bralley P, Jones GH, Luisi BF (2015) "Linkage of Catalysis and 5' End Recognition in Ribonuclease Rnase J." Nucleic Acids Res., 43, 8066. doi: 10.1093/NAR/GKV732. Catalysis and 5' end sensing by ribonuclease rnase j of the metallo- beta-lactamase family. SNAP output
5a2q ribosome cryo-EM (3.9 Å) Quade N, Boehringer D, Leibundgut M, Van Den Heuvel J, Ban N (2015) "Cryo-Em Structure of Hepatitis C Virus Ires Bound to the Human Ribosome at 3.9 Angstrom Resolution." Nat.Commun., 6, 7646. doi: 10.1038/NCOMMS8646. Structure of the hcv ires bound to the human ribosome. SNAP output
5a2t viral protein cryo-EM (5.6 Å) Dimaio F, Chen C, Yu X, Frenz B, Hsu Y, Lin N, Egelman EH (2015) "The Molecular Basis for Flexibility in the Flexible Filamentous Plant Viruses." Nat.Struct.Mol.Biol., 22, 642. doi: 10.1038/NSMB.3054. The molecular basis for flexibility in the flexible filamentous plant viruses. SNAP output
5a79 virus cryo-EM (4.1 Å) Clare DK, Pechnikova EV, Skurat EV, Makarov VV, Sokolova OS, Solovyev AG, Orlova EV (2015) "Novel Inter-Subunit Contacts in Barley Stripe Mosaic Virus Revealed by Cryo-Electron Microscopy." Structure, 23, 1815. doi: 10.1016/J.STR.2015.06.028. Novel inter-subunit contacts in barley stripe mosaic virus revealed by cryo-EM. SNAP output
5a7a virus cryo-EM (4.1 Å) Clare DK, Pechnikova EV, Skurat EV, Makarov VV, Sokolova OS, Solovyev AG, Orlova EV (2015) "Novel Inter-Subunit Contacts in Barley Stripe Mosaic Virus Revealed by Cryo-Electron Microscopy." Structure, 23, 1815. doi: 10.1016/J.STR.2015.06.028. Novel inter-subunit contacts in barley stripe mosaic virus revealed by cryo-EM. SNAP output
5a8l translation cryo-EM (3.8 Å) Matheisl S, Berninghausen O, Becker T, Beckmann R (2015) "Structure of a Human Translation Termination Complex." Nucleic Acids Res., 43, 8615. doi: 10.1093/NAR/GKV909. Human erf1 and the hcmv nascent peptide in the translation termination complex. SNAP output
5ady ribosome cryo-EM (4.5 Å) Zhang Y, Mandava CS, Cao W, Li X, Zhang D, Li N, Zhang Y, Zhang X, Qin Y, Mi K, Lei J, Sanyal S, Gao N (2015) "Hflx is a Ribosome Splitting Factor Rescuing Stalled Ribosomes Under Stress Conditions." Nat.Struct.Mol.Biol., 22, 906. doi: 10.1038/NSMB.3103. cryo-EM structures of the 50s ribosome subunit bound with hflx. SNAP output
5ah5 ligase-RNA X-ray (2.1 Å) Chopra S, Palencia A, Virus C, Schulwitz S, Temple BR, Cusack S, Reader J (2016) "Structural Characterization of Antibiotic Self-Immunity tRNA Synthetase in Plant Tumour Biocontrol Agent." Nat.Commun., 7, 12928. doi: 10.1038/NCOMMS12928. Crystal structure of the ternary complex of agrobacterium radiobacter k84 agnb2 leurs-trna-leuams. SNAP output
5aj3 ribosome cryo-EM (3.6 Å) Greber BJ, Bieri P, Leibundgut M, Leitner A, Aebersold R, Boehringer D, Ban N (2015) "Ribosome. The complete structure of the 55S mammalian mitochondrial ribosome." Science, 348, 303-308. doi: 10.1126/science.aaa3872. Structure of the small subunit of the mammalian mitoribosome. SNAP output
5aka ribosome cryo-EM (5.7 Å) von Loeffelholz O, Jiang Q, Ariosa A, Karuppasamy M, Huard K, Berger I, Shan S, Schaffitzel C (2015) "Ribosome-Srp-Ftsy Cotranslational Targeting Complex in the Closed State." Proc.Natl.Acad.Sci.USA, 112, 3943-3948. doi: 10.1073/PNAS.1424453112. Em structure of ribosome-srp-ftsy complex in closed state. SNAP output
5amq hydrolase X-ray (3.0 Å) Gerlach P, Malet H, Cusack S, Reguera J (2015) "Structural Insights Into Bunyavirus Replication and its Regulation by the Vrna Promoter." Cell, 161, 1267-1279. doi: 10.1016/J.CELL.2015.05.006. Structure of the la crosse bunyavirus polymerase in complex with the 3' and 5' viral RNA. SNAP output
5amr hydrolase X-ray (2.57 Å) Gerlach P, Malet H, Cusack S, Reguera J (2015) "Structural Insights Into Bunyavirus Replication and its Regulation by the Vrna Promoter." Cell(Cambridge,Mass.), 161, 1267. doi: 10.1016/J.CELL.2015.05.006. Structure of the la crosse bunyavirus polymerase in complex with the 3' viral RNA. SNAP output
5an9 translation cryo-EM (3.3 Å) Weis F, Giudice E, Churcher M, Jin L, Hilcenko C, Wong CC, Traynor D, Kay RR, Warren AJ (2015) "Mechanism of Eif6 Release from the Nascent 60S Ribosomal Subunit." Nat.Struct.Mol.Biol., 22, 914. doi: 10.1038/NSMB.3112. Mechanism of eif6 release from the nascent 60s ribosomal subunit. SNAP output
5anb translation cryo-EM (4.1 Å) Weis F, Giudice E, Churcher M, Jin L, Hilcenko C, Wong CC, Traynor D, Kay RR, Warren AJ (2015) "Mechanism of Eif6 Release from the Nascent 60S Ribosomal Subunit." Nat.Struct.Mol.Biol., 22, 914. doi: 10.1038/NSMB.3112. Mechanism of eif6 release from the nascent 60s ribosomal subunit. SNAP output
5anc translation cryo-EM (4.2 Å) Weis F, Giudice E, Churcher M, Jin L, Hilcenko C, Wong CC, Traynor D, Kay RR, Warren AJ (2015) "Mechanism of Eif6 Release from the Nascent 60S Ribosomal Subunit." Nat.Struct.Mol.Biol., 22, 914. doi: 10.1038/NSMB.3112. Mechanism of eif6 release from the nascent 60s ribosomal subunit. SNAP output
5aor hydrolase-RNA X-ray (2.08 Å) Prabu JR, Muller M, Thomae AW, Schussler S, Bonneau F, Becker PB, Conti E (2015) "Structure of the RNA Helicase Mle Reveals the Molecular Mechanisms for Uridine Specificity and RNA-ATP Coupling." Mol.Cell, 60, 487. doi: 10.1016/J.MOLCEL.2015.10.011. Structure of mle RNA adp alf4 complex. SNAP output
5aox translation X-ray (2.04 Å) Ahl V, Keller H, Schmidt S, Weichenrieder O (2015) "Retrotransposition and Crystal Structure of an Alu Rnp in the Ribosome-Stalling Conformation." Mol.Cell, 60, 715. doi: 10.1016/J.MOLCEL.2015.10.003. Human alu RNA retrotransposition complex in the ribosome-stalling conformation. SNAP output
5axm transferase-RNA X-ray (2.21 Å) Kimura S, Suzuki T, Chen M, Kato K, Yu J, Nakamura A, Tanaka I, Yao M (2016) "Template-dependent nucleotide addition in the reverse (3'-5') direction by Thg1-like protein." Sci Adv, 2, e1501397. doi: 10.1126/sciadv.1501397. Crystal structure of thg1 like protein (tlp) with trna(phe). SNAP output
5axn transferase-RNA X-ray (2.703 Å) Kimura S, Suzuki T, Chen M, Kato K, Yu J, Nakamura A, Tanaka I, Yao M (2016) "Template-dependent nucleotide addition in the reverse (3'-5') direction by Thg1-like protein." Sci Adv, 2, e1501397. doi: 10.1126/sciadv.1501397. Crystal structure of thg1 like protein (tlp) with trna(phe) and gdpnp. SNAP output
5b63 ligase X-ray (3.0 Å) Zhou M, Ye S, Stephen P, Zhang R, Wang ED, Giege R, Lin SX "Crystal structures of E.coli arginyl-tRNA synthetase (ArgRS) in complex with substrate tRNA(Arg)." Crystal structures of e.coli arginyl-trna synthetase (argrs) in complex with substrate trna(arg). SNAP output
5br8 ribosome X-ray (3.4 Å) Sierra RG, Gati C, Laksmono H, Dao EH, Gul S, Fuller F, Kern J, Chatterjee R, Ibrahim M, Brewster A, Young ID, Michels-Clark T, Aquila A, Mengning L, Hunter MS, Koglin JE, Boutet S, Junco EA, Hayes B, Bogan MJ, Hampton CY, Puglisi EV, Sauter NK, Stan CA, Zouni A, Yano J, Yachandra VK, Soltis SM, Puglisi JD, DeMirci H "Ambient-temperature crystal structure of 30S ribosomal subunit from Thermus thermophilus in complex with paromomycin." Ambient-temperature crystal structure of 30s ribosomal subunit from thermus thermophilus in complex with paromomycin. SNAP output
5bte hydrolase-RNA X-ray (2.4 Å) Wang VY, Jiao X, Kiledjian M, Tong L (2015) "Structural and biochemical studies of the distinct activity profiles of Rai1 enzymes." Nucleic Acids Res., 43, 6596-6606. doi: 10.1093/nar/gkv620. Crystal structure of ashbya gossypii rai1 in complex with pu(s)6-mn2+. SNAP output
5bud hydrolase-RNA X-ray (1.99 Å) Wang VY, Jiao X, Kiledjian M, Tong L (2015) "Structural and biochemical studies of the distinct activity profiles of Rai1 enzymes." Nucleic Acids Res., 43, 6596-6606. doi: 10.1093/nar/gkv620. Crystal structure of candida albicans rai1 in complex with pu5-mn2+. SNAP output
5bym RNA binding protein-RNA X-ray (2.708 Å) Wilinski D, Qiu C, Lapointe CP, Nevil M, Campbell ZT, Tanaka Hall TM, Wickens M (2015) "RNA regulatory networks diversified through curvature of the PUF protein scaffold." Nat Commun, 6, 8213. doi: 10.1038/ncomms9213. Crystal structure of the RNA-binding domain of yeast puf5p bound to smx2 RNA. SNAP output
5bz1 RNA binding protein-RNA X-ray (2.15 Å) Wilinski D, Qiu C, Lapointe CP, Nevil M, Campbell ZT, Tanaka Hall TM, Wickens M (2015) "RNA regulatory networks diversified through curvature of the PUF protein scaffold." Nat Commun, 6, 8213. doi: 10.1038/ncomms9213. Crystal structure of the RNA-binding domain of yeast puf5p bound to mfa2 RNA. SNAP output
5bz5 RNA binding protein-RNA X-ray (2.8 Å) Wilinski D, Qiu C, Lapointe CP, Nevil M, Campbell ZT, Tanaka Hall TM, Wickens M (2015) "RNA regulatory networks diversified through curvature of the PUF protein scaffold." Nat Commun, 6, 8213. doi: 10.1038/ncomms9213. Crystal structure of the RNA-binding domain of yeast puf5p bound to amn1 RNA. SNAP output
5bzu RNA binding protein-RNA X-ray (2.501 Å) Wilinski D, Qiu C, Lapointe CP, Nevil M, Campbell ZT, Tanaka Hall TM, Wickens M (2015) "RNA regulatory networks diversified through curvature of the PUF protein scaffold." Nat Commun, 6, 8213. doi: 10.1038/ncomms9213. Crystal structure of the RNA-binding domain of yeast puf5p bound to aat2 RNA. SNAP output
5bzv RNA binding protein-RNA X-ray (2.354 Å) Wilinski D, Qiu C, Lapointe CP, Nevil M, Campbell ZT, Tanaka Hall TM, Wickens M (2015) "RNA regulatory networks diversified through curvature of the PUF protein scaffold." Nat Commun, 6, 8213. doi: 10.1038/ncomms9213. Crystal structure of the RNA-binding domain of yeast puf5p bound to smx2 RNA. SNAP output
5c0w hydrolase-RNA X-ray (4.6 Å) Makino DL, Schuch B, Stegmann E, Baumgartner M, Basquin C, Conti E (2015) "RNA degradation paths in a 12-subunit nuclear exosome complex." Nature, 524, 54-58. doi: 10.1038/nature14865. Structure of a 12-subunit nuclear exosome complex bound to single-stranded RNA substrates. SNAP output
5c0x hydrolase-RNA X-ray (3.812 Å) Makino DL, Schuch B, Stegmann E, Baumgartner M, Basquin C, Conti E (2015) "RNA degradation paths in a 12-subunit nuclear exosome complex." Nature, 524, 54-58. doi: 10.1038/nature14865. Structure of a 12-subunit nuclear exosome complex bound to structured RNA. SNAP output
5c0y hydrolase X-ray (2.1 Å) Makino DL, Schuch B, Stegmann E, Baumgartner M, Basquin C, Conti E (2015) "RNA degradation paths in a 12-subunit nuclear exosome complex." Nature, 524, 54-58. doi: 10.1038/nature14865. Crystal structure of the rrp6 catalytic domain bound to poly(u) RNA. SNAP output
5c9h RNA binding protein-RNA X-ray (3.0 Å) Jansson LI, Akiyama BM, Ooms A, Lu C, Rubin SM, Stone MD (2015) "Structural basis of template-boundary definition in Tetrahymena telomerase." Nat.Struct.Mol.Biol., 22, 883-888. doi: 10.1038/nsmb.3101. Structural basis of template boundary definition in tetrahymena telomerase. SNAP output
5ccb transferase-RNA X-ray (2.0 Å) Finer-Moore J, Czudnochowski N, O'Connell JD, Wang AL, Stroud RM (2015) "Crystal Structure of the Human tRNA m(1)A58 Methyltransferase-tRNA3(Lys) Complex: Refolding of Substrate tRNA Allows Access to the Methylation Target." J.Mol.Biol., 427, 3862-3876. doi: 10.1016/j.jmb.2015.10.005. Crystal structure of human m1a58 methyltransferase in a complex with trna3lys and sah. SNAP output
5ccx transferase-RNA X-ray (2.1 Å) Finer-Moore J, Czudnochowski N, O'Connell JD, Wang AL, Stroud RM (2015) "Crystal Structure of the Human tRNA m(1)A58 Methyltransferase-tRNA3(Lys) Complex: Refolding of Substrate tRNA Allows Access to the Methylation Target.