5mC-DNA-protein interactions for PDB entry 5t01

PDB-id: 5t01; SNAP-derived features in text and JSON formats; DNAproDB
Class: transcription regulator-DNA
Method: X-ray (1.89 Å)
Summary: Human c-jun DNA binding domain homodimer in complex with methylated DNA
Reference: Hong S, Wang D, Horton JR, Zhang X, Speck SH, Blumenthal RM, Cheng X (2017): "Methyl-dependent and spatial-specific DNA recognition by the orthologous transcription factors human AP-1 and Epstein-Barr virus Zta." Nucleic Acids Res., 45, 2503-2515. doi: 10.1093/nar/gkx057.
Abstract

Cartoon-block schematics in six views (download the tarball)

List of 1 5mC-amino acid contact

The contacts include paired nucleotides (mostly a G in Watson-Crick G-C pairing), and amino-acids within a 4.5-A distance cutoff to base atoms of 5mC.
The structure is oriented in the base reference frame of 5mC, allowing for easy comparison and direct superimposition between entries.
The black sphere (•) denotes the 5-methyl carbon atom in 5mC.

No. 1 D.5CM29: `hydrophobic-with-A.ALA265 is-WC-paired is-in-duplex [-]:CGT/AcG`

5mC-DNA-protein interactions for PDB entry 5t01 [5mC-protein List · SNAP web server]