Summary information and primary citation
- PDB-id
- 7mwk; SNAP-derived features in text and JSON formats;
DNAproDB
- Class
- DNA binding protein-DNA
- Method
- X-ray (2.453 Å)
- Summary
- Crystal structure of mbd2 with DNA
- Reference
- Liu K, Dong A, Edwards AM, Arrowsmith CH, Min J, Structural Genomics Consortium (SGC): "Crystal structure of MBD2 with DNA."
- Abstract
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- The contacts include paired nucleotides (mostly a G in Watson-Crick G-C pairing), and
amino-acids within a 4.5-A distance cutoff to base atoms of 5mC.
- The structure is oriented in the base reference frame of 5mC, allowing for easy comparison
and direct superimposition between entries.
- The black sphere (•) denotes the 5-methyl carbon atom in 5mC.
No. 1 C.5CM6: stacking-with-A.ARG166 is-WC-paired is-in-duplex [+]:AcG/cGT |
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No. 2 D.5CM6: other-contacts is-WC-paired is-in-duplex [-]:cGT/AcG |
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No. 3 E.5CM6: other-contacts is-WC-paired is-in-duplex [+]:AcG/cGT |
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No. 4 F.5CM6: stacking-with-B.ARG166 is-WC-paired is-in-duplex [-]:cGT/AcG |
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