Summary information and primary citation

PDB-id
3bam; SNAP-derived features in text and JSON formats; DNAproDB
Class
hydrolase-DNA
Method
X-ray (1.8 Å)
Summary
Restriction endonuclease bamhi complex with DNA and manganese ions (post-reactive complex)
Reference
Viadiu H, Aggarwal AK (1998): "The role of metals in catalysis by the restriction endonuclease BamHI." Nat.Struct.Biol., 5, 910-916. doi: 10.1038/2352.
Abstract
Type II restriction enzymes are characterized by their remarkable specificity and simplicity. They require only divalent metals (such as Mg2+ or Mn2+) as cofactors to catalyze the hydrolysis of DNA. However, most of the structural work on endonucleases has been performed in the absence of metals, leaving unanswered questions about their mechanisms of DNA cleavage. Here we report structures of the endonuclease BamHI-DNA complex, determined in the presence of Mn2+ and Ca2+, that describe the enzyme at different stages of catalysis. Overall, the results support a two-metal mechanism of DNA cleavage for BamHI which is distinct from that of EcoRV.

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