Summary information and primary citation

PDB-id
3fof; SNAP-derived features in text and JSON formats; DNAproDB
Class
isomerase-DNA
Method
X-ray (4.0 Å)
Summary
Structural insight into the quinolone-DNA cleavage complex of type iia topoisomerases
Reference
Laponogov I, Sohi MK, Veselkov DA, Pan X-S, Sawhney R, Thompson AW, McAuley KE, Fisher LM, Sanderson MR (2009): "Structural insight into the quinolone-DNA cleavage complex of type IIA topoisomerases." Nat.Struct.Mol.Biol., 16, 667-669. doi: 10.1038/nsmb.1604.
Abstract
Type II topoisomerases alter DNA topology by forming a covalent DNA-cleavage complex that allows DNA transport through a double-stranded DNA break. We present the structures of cleavage complexes formed by the Streptococcus pneumoniae ParC breakage-reunion and ParE TOPRIM domains of topoisomerase IV stabilized by moxifloxacin and clinafloxacin, two antipneumococcal fluoroquinolones. These structures reveal two drug molecules intercalated at the highly bent DNA gate and help explain antibacterial quinolone action and resistance.

Cartoon-block schematics in six views (download the tarball)

PyMOL session file Download PDB file View in 3Dmol.js