Summary information and primary citation

PDB-id
4kud; SNAP-derived features in text and JSON formats; DNAproDB
Class
structural protein-transcription-DNA
Method
X-ray (3.203 Å)
Summary
Crystal structure of n-terminal acetylated sir3 bah domain d205n mutant in complex with yeast nucleosome core particle
Reference
Yang D, Fang Q, Wang M, Ren R, Wang H, He M, Sun Y, Yang N, Xu RM (2013): "N alpha-acetylated Sir3 stabilizes the conformation of a nucleosome-binding loop in the BAH domain." Nat.Struct.Mol.Biol., 20, 1116-1118. doi: 10.1038/nsmb.2637.
Abstract
In Saccharomyces cerevisiae, acetylation of the Sir3 N terminus is important for transcriptional silencing. This covalent modification promotes the binding of the Sir3 BAH domain to the nucleosome, but a mechanistic understanding of this phenomenon is lacking. By X-ray crystallography, we show here that the acetylated N terminus of Sir3 does not interact with the nucleosome directly. Instead, it stabilizes a nucleosome-binding loop in the BAH domain.

Cartoon-block schematics in six views (download the tarball)

PyMOL session file Download PDB file View in 3Dmol.js