SNAP output for PDB entry 4zyd [SNAP web server]

PDB-id

4zyd; SNAP-derived features in text and JSON formats; DNAproDB

Class

transferase

Method

X-ray (2.682 Å)

Summary

Crystal structure of sulfolobus solfataricus o6-methylguanine methyltransferase in complex with modified DNA

Reference

Perugino G, Miggiano R, Serpe M, Vettone A, Valenti A, Lahiri S, Rossi F, Rossi M, Rizzi M, Ciaramella M (2015): "Structure-function relationships governing activity and stability of a DNA alkylation damage repair thermostable protein." Nucleic Acids Res., 43, 8801-8816. doi: 10.1093/nar/gkv774.

Abstract

Alkylated DNA-protein alkyltransferases repair alkylated DNA bases, which are among the most common DNA lesions, and are evolutionary conserved, from prokaryotes to higher eukaryotes. The human ortholog, hAGT, is involved in resistance to alkylating chemotherapy drugs. We report here on the alkylated DNA-protein alkyltransferase, SsOGT, from an archaeal species living at high temperature, a condition that enhances the harmful effect of DNA alkylation. The exceptionally high stability of SsOGT gave us the unique opportunity to perform structural and biochemical analysis of a protein of this class in its post-reaction form. This analysis, along with those performed on SsOGT in its ligand-free and DNA-bound forms, provides insights in the structure-function relationships of the protein before, during and after DNA repair, suggesting a molecular basis for DNA recognition, catalytic activity and protein post-reaction fate, and giving hints on the mechanism of alkylation-induced inactivation of this class of proteins.