Summary information and primary citation

PDB-id
5zln; SNAP-derived features in text and JSON formats; DNAproDB
Class
immune system
Method
X-ray (2.3 Å)
Summary
Crystal structure of mouse tlr9 in complex with two dnas (cpg DNA and tcgcca DNA)
Reference
Ishida H, Ohto U, Shibata T, Miyake K, Shimizu T (2018): "Structural basis for species-specific activation of mouse Toll-like receptor 9." FEBS Lett., 592, 2636-2646. doi: 10.1002/1873-3468.13176.
Abstract
Single-stranded DNA containing unmethylated cytosine-phosphate-guanine (CpG) motifs derived from microorganisms are recognized by Toll-like receptor (TLR) 9 and activate an innate immune response. TLR9 has two DNA-binding sites for CpG DNA and DNA containing cytosine at the second position from the 5'-end; both are required for efficient TLR9 activation in most vertebrate species. However, mouse TLR9 can be dimerized by CpG DNA only, although the underlying mechanism remains elusive. Here, we report the crystal structure of mouse TLR9 complexed with both DNAs. Although most TLR9-CpG DNA interactions are conserved among species, some are unique to mice and involved in species-specificity. These findings provide the structural basis for how mouse TLR9 dimerizes efficiently in response to CpG DNA to activate innate immunity.

Cartoon-block schematics in six views (download the tarball)

PyMOL session file Download PDB file View in 3Dmol.js