SNAP output for PDB entry 6scf [SNAP web server]

PDB-id

6scf; SNAP-derived features in text and JSON formats; DNAproDB

Class

DNA

Method

X-ray (1.55 Å)

Summary

A viral anti-crispr subverts type iii crispr immunity by rapid degradation of cyclic oligoadenylate

Reference

Athukoralage JS, McMahon SA, Zhang C, Gruschow S, Graham S, Krupovic M, Whitaker RJ, Gloster TM, White MF (2020): "An anti-CRISPR viral ring nuclease subverts type III CRISPR immunity." Nature, 577, 572-575. doi: 10.1038/s41586-019-1909-5.

Abstract

The CRISPR system in bacteria and archaea provides adaptive immunity against mobile genetic elements. Type III CRISPR systems detect viral RNA, resulting in the activation of two regions of the Cas10 protein: an HD nuclease domain (which degrades viral DNA)_1,2 and a cyclase domain (which synthesizes cyclic oligoadenylates from ATP)_3-5. Cyclic oligoadenylates in turn activate defence enzymes with a CRISPR-associated Rossmann fold domain₆, sculpting a powerful antiviral response_7-10 that can drive viruses to extinction_7,8. Cyclic nucleotides are increasingly implicated in host-pathogen interactions_11-13. Here we identify a new family of viral anti-CRISPR (Acr) enzymes that rapidly degrade cyclic tetra-adenylate (cA₄). The viral ring nuclease AcrIII-1 is widely distributed in archaeal and bacterial viruses and in proviruses. The enzyme uses a previously unknown fold to bind cA₄ specifically, and a conserved active site to rapidly cleave this signalling molecule, allowing viruses to neutralize the type III CRISPR defence system. The AcrIII-1 family has a broad host range, as it targets cA₄ signalling molecules rather than specific CRISPR effector proteins. Our findings highlight the crucial role of cyclic nucleotide signalling in the conflict between viruses and their hosts.