SNAP output for PDB entry 6wmr [SNAP web server]

PDB-id

6wmr; SNAP-derived features in text and JSON formats; DNAproDB

Class

transcription

Method

cryo-EM (3.46 Å)

Summary

F. tularensis rnaps70-(mgla-sspa)-igla DNA complex

Reference

Travis BA, Ramsey KM, Prezioso SM, Tallo T, Wandzilak JM, Hsu A, Borgnia M, Bartesaghi A, Dove SL, Brennan RG, Schumacher MA (2021): "Structural Basis for Virulence Activation of Francisella tularensis." Mol.Cell, 81, 139. doi: 10.1016/j.molcel.2020.10.035.

Abstract

The bacterium Francisella tularensis (Ft) is one of the most infectious agents known. Ft virulence is controlled by a unique combination of transcription regulators: the MglA-SspA heterodimer, PigR, and the stress signal, ppGpp. MglA-SspA assembles with the σ₇₀-associated RNAP holoenzyme (RNAPσ₇₀), forming a virulence-specialized polymerase. These factors activate Francisella pathogenicity island (FPI) gene expression, which is required for virulence, but the mechanism is unknown. Here we report FtRNAPσ₇₀-promoter-DNA, FtRNAPσ₇₀-(MglA-SspA)-promoter DNA, and FtRNAPσ₇₀-(MglA-SspA)-ppGpp-PigR-promoter DNA cryo-EM structures. Structural and genetic analyses show MglA-SspA facilitates σ₇₀ binding to DNA to regulate virulence and virulence-enhancing genes. Our Escherichia coli RNAPσ_70-homodimeric EcSspA structure suggests this is a general SspA-transcription regulation mechanism. Strikingly, our FtRNAPσ₇₀-(MglA-SspA)-ppGpp-PigR-DNA structure reveals ppGpp binding to MglA-SspA tethers PigR to promoters. PigR in turn recruits FtRNAP αCTDs to DNA UP elements. Thus, these studies unveil a unique mechanism for Ft pathogenesis involving a virulence-specialized RNAP that employs two (MglA-SspA)-based strategies to activate virulence genes.