Summary information and primary citation

PDB-id
7w7l; SNAP-derived features in text and JSON formats; DNAproDB
Class
DNA binding protein-DNA-DNA
Method
X-ray (3.0 Å)
Summary
Structure of nf-kb p52 homodimer bound to 13-mer a-t-centric p-selectin kb DNA fragment
Reference
Pan W, Meshcheryakov VA, Li T, Wang Y, Ghosh G, Wang VY (2023): "Structures of NF-kappa B p52 homodimer-DNA complexes rationalize binding mechanisms and transcription activation." Elife, 12. doi: 10.7554/eLife.86258.
Abstract
The mammalian NF-κB p52:p52 homodimer together with its cofactor Bcl3 activates transcription of κB sites with a central G/C base pair (bp), while it is inactive toward κB sites with a central A/T bp. To understand the molecular basis for this unique property of p52, we have determined the crystal structures of recombinant human p52 protein in complex with a P-selectin(PSel)-κB DNA (5'-GGGGT

Cartoon-block schematics in six views (download the tarball)

PyMOL session file Download PDB file View in 3Dmol.js